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The map label for this gene is yciR [C]

Identifier: 119946750

GI number: 119946750

Start: 3866752

End: 3868578

Strand: Reverse

Name: yciR [C]

Synonym: Ping_3143

Alternate gene names: 119946750

Gene position: 3868578-3866752 (Counterclockwise)

Preceding gene: 119946752

Following gene: 119946746

Centisome position: 84.84

GC content: 38.26

Gene sequence:

>1827_bases
ATGAGTTTGGATGCCAATAAAAAACTGCTCTTTGAACATCAAAAGGCGGAAAAGCTCGCTGCTGAATTAGTCAGAGCCAA
TAAAAAATTGTTATTTGAGCATGAAGAAAAAGAAAAACTGGCTGCTGAGTTAATCATTGCCCGTGAATTTCGTATTGCTG
CCATCATATTTGAATCTCAAGAAGGTATGCTTGTCACAGATGCTAATAAACATATTCTTCGTGTGAATAAGGCCTTTACT
CGCATTTCAGGCTACAGTGCAGAAGAGGTTATTGGACAAACACCCAAGCTCTTTAGCTCAGGCCGACAAGACAAAGTGTT
CTATAAGGCGATGTGGGACAGTATCAATACCACCAACACATGGGAAGGTGAAATTTGGAATCGCTGCAAAAATGGTGACA
TCTATCTAGGGCATATGACTATTACCGCAGTGAGAGACACGGGCAATATGATCTCTAATTATGTTGCTACGATCACCGAT
ATTACGCTAAACAAAGCCGCCTTAGAAAAAATCAATAACCTCGCCTACTTTGATCAAATCACTCAGTTGCCAAATCGTCT
TTTTTTAGTTGATAAGCTTAATCTCGCCCTAGCTGAAAGTGCCCACAGTAATCATCATGGTGCATTACTATTTATTGATT
TAAACCAGCTTAAAATCATCCACAGCATCCACGGGTACAGTGTGAGAAATTTACTGTTAAAACAAGTATCCACTCGCTTA
ACTAAGATTGTAAGAAAAGCTGATACCATAGCCCGAGTAAGCGGTGATGAGTTCGTAATACTTTTAGAAAACTTGAGTCA
GCAAAACATTGAAGTTACCACCGAAATCCAAAATATTGCTAAAAAAATTATTTTTTCATTAAATCAACCCTACCAGCTCA
ATATGTACAAATATCGCGGTACCGTCAGTATTGGCGCAACAATATTCAATGGGAATGAATTCGCATCGGAAAAACTGTTA
AAGCAAGCTGATATTGCTATGCATCAATCTAAGGTCGCAGGGCGCAATCGCCTTTGTTTCTTTAATCAAACAATGCAAGA
GGCTATTACAGCCCGTGCTGAGATGGAACAGAAACTACGCGAAGCGATTGAACACAATCAATTTCAGCTATATTATCAAA
TACAGGTTAGCAGTTCTGGTCAAGCATTAGGGGCTGAAGCCTTAATCCGTTGGCAGCATCCAGAAGATGGTCAGATTTCC
CCCTTTAACTTTATACCTTTAGCCGAAGAAACCGGACTTATTTTACCAATAGGAGAATGGGTATTAAACACAGCCTGCGC
TCAACTTAAAAAATGGCAACAAAACCCACTAACACAAGACCTTGTACTTGCTGTTAATGTAAGTGCTCTACAAATTCATC
AAGAAGACTTTGTAGAGCAACTAAAAAGCATCCTGCAAAAGCATAAAATCACCCCTGAACGGCTTAAATTAGAACTAACT
GAAAGTATGTTGGTAGAAAATGTCAGCGGCATTATTACTAAAATTAATACACTGAGAAAAATAGGTGTTTTATTTTCATT
AGATGACTTTGGTACTGGTTATTCTTCTTTACAATATCTTAAAAAATTGCCAATCAATCAATTAAAAATAGACCAGTCAT
TTGTGCGAGACCTTATCACGGATACCAATGACAGAGCGATTGTACGCACCATCATTACCATGTCACATAATTTAGGTCTT
AACGTTATTGCCGAGGGTGTAGAGACGGTAGAACAAAAACAATACTTATTGAGTGAAGGCTGTATGAATTATCAAGGCTA
CCTATTTAGTAAGCCCGTACCAATTGATGAGTTTGAAGCGTTGATTTTTCGTTTAAGTGATACCTGA

Upstream 100 bases:

>100_bases
TAATAATAAAATTTTTGAATAGATGATTGCAAGAAAGTTAGGTAACAACAATACATTTAAAAAACGTATACATTACTTAT
AAATATAAAGGGTTAATATT

Downstream 100 bases:

>100_bases
TTTTAAACAGTGAGGGTTACCAATGTTACAGAAAGTCCAAACTCACTATTAAACAGCAATTACTATATAAAAGCGCAAGT
TTACTCAATTGCTTGAGCAT

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 608; Mature: 607

Protein sequence:

>608_residues
MSLDANKKLLFEHQKAEKLAAELVRANKKLLFEHEEKEKLAAELIIAREFRIAAIIFESQEGMLVTDANKHILRVNKAFT
RISGYSAEEVIGQTPKLFSSGRQDKVFYKAMWDSINTTNTWEGEIWNRCKNGDIYLGHMTITAVRDTGNMISNYVATITD
ITLNKAALEKINNLAYFDQITQLPNRLFLVDKLNLALAESAHSNHHGALLFIDLNQLKIIHSIHGYSVRNLLLKQVSTRL
TKIVRKADTIARVSGDEFVILLENLSQQNIEVTTEIQNIAKKIIFSLNQPYQLNMYKYRGTVSIGATIFNGNEFASEKLL
KQADIAMHQSKVAGRNRLCFFNQTMQEAITARAEMEQKLREAIEHNQFQLYYQIQVSSSGQALGAEALIRWQHPEDGQIS
PFNFIPLAEETGLILPIGEWVLNTACAQLKKWQQNPLTQDLVLAVNVSALQIHQEDFVEQLKSILQKHKITPERLKLELT
ESMLVENVSGIITKINTLRKIGVLFSLDDFGTGYSSLQYLKKLPINQLKIDQSFVRDLITDTNDRAIVRTIITMSHNLGL
NVIAEGVETVEQKQYLLSEGCMNYQGYLFSKPVPIDEFEALIFRLSDT

Sequences:

>Translated_608_residues
MSLDANKKLLFEHQKAEKLAAELVRANKKLLFEHEEKEKLAAELIIAREFRIAAIIFESQEGMLVTDANKHILRVNKAFT
RISGYSAEEVIGQTPKLFSSGRQDKVFYKAMWDSINTTNTWEGEIWNRCKNGDIYLGHMTITAVRDTGNMISNYVATITD
ITLNKAALEKINNLAYFDQITQLPNRLFLVDKLNLALAESAHSNHHGALLFIDLNQLKIIHSIHGYSVRNLLLKQVSTRL
TKIVRKADTIARVSGDEFVILLENLSQQNIEVTTEIQNIAKKIIFSLNQPYQLNMYKYRGTVSIGATIFNGNEFASEKLL
KQADIAMHQSKVAGRNRLCFFNQTMQEAITARAEMEQKLREAIEHNQFQLYYQIQVSSSGQALGAEALIRWQHPEDGQIS
PFNFIPLAEETGLILPIGEWVLNTACAQLKKWQQNPLTQDLVLAVNVSALQIHQEDFVEQLKSILQKHKITPERLKLELT
ESMLVENVSGIITKINTLRKIGVLFSLDDFGTGYSSLQYLKKLPINQLKIDQSFVRDLITDTNDRAIVRTIITMSHNLGL
NVIAEGVETVEQKQYLLSEGCMNYQGYLFSKPVPIDEFEALIFRLSDT
>Mature_607_residues
SLDANKKLLFEHQKAEKLAAELVRANKKLLFEHEEKEKLAAELIIAREFRIAAIIFESQEGMLVTDANKHILRVNKAFTR
ISGYSAEEVIGQTPKLFSSGRQDKVFYKAMWDSINTTNTWEGEIWNRCKNGDIYLGHMTITAVRDTGNMISNYVATITDI
TLNKAALEKINNLAYFDQITQLPNRLFLVDKLNLALAESAHSNHHGALLFIDLNQLKIIHSIHGYSVRNLLLKQVSTRLT
KIVRKADTIARVSGDEFVILLENLSQQNIEVTTEIQNIAKKIIFSLNQPYQLNMYKYRGTVSIGATIFNGNEFASEKLLK
QADIAMHQSKVAGRNRLCFFNQTMQEAITARAEMEQKLREAIEHNQFQLYYQIQVSSSGQALGAEALIRWQHPEDGQISP
FNFIPLAEETGLILPIGEWVLNTACAQLKKWQQNPLTQDLVLAVNVSALQIHQEDFVEQLKSILQKHKITPERLKLELTE
SMLVENVSGIITKINTLRKIGVLFSLDDFGTGYSSLQYLKKLPINQLKIDQSFVRDLITDTNDRAIVRTIITMSHNLGLN
VIAEGVETVEQKQYLLSEGCMNYQGYLFSKPVPIDEFEALIFRLSDT

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=554, Percent_Identity=32.3104693140794, Blast_Score=306, Evalue=3e-84,
Organism=Escherichia coli, GI87081921, Length=469, Percent_Identity=33.9019189765458, Blast_Score=243, Evalue=3e-65,
Organism=Escherichia coli, GI226510982, Length=424, Percent_Identity=30.8962264150943, Blast_Score=209, Evalue=5e-55,
Organism=Escherichia coli, GI1787055, Length=408, Percent_Identity=28.1862745098039, Blast_Score=155, Evalue=9e-39,
Organism=Escherichia coli, GI1790496, Length=245, Percent_Identity=36.734693877551, Blast_Score=151, Evalue=2e-37,
Organism=Escherichia coli, GI87081845, Length=242, Percent_Identity=35.9504132231405, Blast_Score=145, Evalue=6e-36,
Organism=Escherichia coli, GI1788849, Length=473, Percent_Identity=27.6955602536998, Blast_Score=145, Evalue=6e-36,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=35.1020408163265, Blast_Score=142, Evalue=8e-35,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=34.0336134453782, Blast_Score=142, Evalue=9e-35,
Organism=Escherichia coli, GI1788502, Length=266, Percent_Identity=30.8270676691729, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI87081980, Length=254, Percent_Identity=31.8897637795276, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI87082096, Length=435, Percent_Identity=24.8275862068966, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1788381, Length=321, Percent_Identity=27.4143302180685, Blast_Score=105, Evalue=8e-24,
Organism=Escherichia coli, GI1789650, Length=431, Percent_Identity=20.8816705336427, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI87081977, Length=158, Percent_Identity=29.746835443038, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1787410, Length=153, Percent_Identity=27.4509803921569, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI145693134, Length=200, Percent_Identity=30.5, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI87081881, Length=192, Percent_Identity=30.2083333333333, Blast_Score=64, Evalue=4e-11,
Organism=Escherichia coli, GI1787262, Length=175, Percent_Identity=25.1428571428571, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 69074; Mature: 68943

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLDANKKLLFEHQKAEKLAAELVRANKKLLFEHEEKEKLAAELIIAREFRIAAIIFESQ
CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHEECCHHHHHHHHHHHHHHCEEEEEEEEECC
EGMLVTDANKHILRVNKAFTRISGYSAEEVIGQTPKLFSSGRQDKVFYKAMWDSINTTNT
CCEEEECCCCCEEEEHHHHHHHCCCCHHHHHCCCCHHHHCCCCCHHHHHHHHCCCCCCCC
WEGEIWNRCKNGDIYLGHMTITAVRDTGNMISNYVATITDITLNKAALEKINNLAYFDQI
CCCHHHHCCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
TQLPNRLFLVDKLNLALAESAHSNHHGALLFIDLNQLKIIHSIHGYSVRNLLLKQVSTRL
HHCCCEEEEEEHHHHHHHHCCCCCCCCEEEEEECCCEEEHHHHCCHHHHHHHHHHHHHHH
TKIVRKADTIARVSGDEFVILLENLSQQNIEVTTEIQNIAKKIIFSLNQPYQLNMYKYRG
HHHHHHHHHHHEECCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCEEEEEEEEEC
TVSIGATIFNGNEFASEKLLKQADIAMHQSKVAGRNRLCFFNQTMQEAITARAEMEQKLR
EEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHH
EAIEHNQFQLYYQIQVSSSGQALGAEALIRWQHPEDGQISPFNFIPLAEETGLILPIGEW
HHHCCCCEEEEEEEEECCCCCCCCCHHEEEECCCCCCCCCCEEEEECCCCCCEEEEHHHH
VLNTACAQLKKWQQNPLTQDLVLAVNVSALQIHQEDFVEQLKSILQKHKITPERLKLELT
HHHHHHHHHHHHHCCCCCCCEEEEEEHHHHEEHHHHHHHHHHHHHHHHCCCHHHHHHHHH
ESMLVENVSGIITKINTLRKIGVLFSLDDFGTGYSSLQYLKKLPINQLKIDQSFVRDLIT
HHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHCCCCCEECCHHHHHHHHC
DTNDRAIVRTIITMSHNLGLNVIAEGVETVEQKQYLLSEGCMNYQGYLFSKPVPIDEFEA
CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHH
LIFRLSDT
HHEEECCC
>Mature Secondary Structure 
SLDANKKLLFEHQKAEKLAAELVRANKKLLFEHEEKEKLAAELIIAREFRIAAIIFESQ
CCCCCCHHHHHHHHHHHHHHHHHHCCHHHEECCHHHHHHHHHHHHHHCEEEEEEEEECC
EGMLVTDANKHILRVNKAFTRISGYSAEEVIGQTPKLFSSGRQDKVFYKAMWDSINTTNT
CCEEEECCCCCEEEEHHHHHHHCCCCHHHHHCCCCHHHHCCCCCHHHHHHHHCCCCCCCC
WEGEIWNRCKNGDIYLGHMTITAVRDTGNMISNYVATITDITLNKAALEKINNLAYFDQI
CCCHHHHCCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
TQLPNRLFLVDKLNLALAESAHSNHHGALLFIDLNQLKIIHSIHGYSVRNLLLKQVSTRL
HHCCCEEEEEEHHHHHHHHCCCCCCCCEEEEEECCCEEEHHHHCCHHHHHHHHHHHHHHH
TKIVRKADTIARVSGDEFVILLENLSQQNIEVTTEIQNIAKKIIFSLNQPYQLNMYKYRG
HHHHHHHHHHHEECCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCEEEEEEEEEC
TVSIGATIFNGNEFASEKLLKQADIAMHQSKVAGRNRLCFFNQTMQEAITARAEMEQKLR
EEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHH
EAIEHNQFQLYYQIQVSSSGQALGAEALIRWQHPEDGQISPFNFIPLAEETGLILPIGEW
HHHCCCCEEEEEEEEECCCCCCCCCHHEEEECCCCCCCCCCEEEEECCCCCCEEEEHHHH
VLNTACAQLKKWQQNPLTQDLVLAVNVSALQIHQEDFVEQLKSILQKHKITPERLKLELT
HHHHHHHHHHHHHCCCCCCCEEEEEEHHHHEEHHHHHHHHHHHHHHHHCCCHHHHHHHHH
ESMLVENVSGIITKINTLRKIGVLFSLDDFGTGYSSLQYLKKLPINQLKIDQSFVRDLIT
HHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHCCCCCEECCHHHHHHHHC
DTNDRAIVRTIITMSHNLGLNVIAEGVETVEQKQYLLSEGCMNYQGYLFSKPVPIDEFEA
CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHH
LIFRLSDT
HHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]