Definition | Psychromonas ingrahamii 37, complete genome. |
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Accession | NC_008709 |
Length | 4,559,598 |
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The map label for this gene is 119946730
Identifier: 119946730
GI number: 119946730
Start: 3833416
End: 3834453
Strand: Reverse
Name: 119946730
Synonym: Ping_3114
Alternate gene names: NA
Gene position: 3834453-3833416 (Counterclockwise)
Preceding gene: 119946731
Following gene: 119946729
Centisome position: 84.1
GC content: 35.45
Gene sequence:
>1038_bases ATGTCTCAACTTAAAATTCAATTCATAAATGCAGGCGTAGGTGATTGTACTCTCATCACTGATCTAGTCTCCAATAAGAA AATATTAATAGACTCAGGTCCGAGTAAGGGCGTTGGCAGATTGACGGTTACGAGTGTACTAACGCGTATCTTAGGTGGTA ATAAAGATATTGATTTAGCTATACTTACTCACAACGATGACGATCACATTGGTGGGTTTACAGGTTTGATCACCAATAAT ATTGTTAAAATTAACAAGATTATTTTTAACACGGTAGCTGAACTAGAAGACGATCAATTTGTAGATTCTGGAAAAGCATC ATATCGACAAGACTTGAACTTATATAAAACCGTCAAGGATACAAATATTGATATAGAGAGCCTTGTAGTTCATGAGGGTA GTTTAAACACTATAGAACTTGGGGATATTACTCTTCGGTTTATTTCACCAAATATATCTAAAATGAGTAAGCTAAAAAGC TGGGCTATTAGAGAAGAGAAGGTGGCAGTAAAAAAAGAAGAAGAACGTTTGGCTAAAAGTAAAAAGGCATCTAAAAATGT CAATTATACTTGTCTTGACGACGCTTTAGACGCTATCAATTTAGAAGATACATTCGAGCCAGATACTAGAGAGCCTAACG GTTCCTCTTTTGCTTTCATATTAGAATATGGCGATAATCGTTTATTATTTCTTGGTGATTGCCATATGGATATTGTGGAA GCCTATCTAGCGGATCAGGATAAACCACAAATTTTTGACCTTGTTAAACTGTCACATCACTCTAGCGAACATAATAATAG TCAGGAATTTTTTAACCAAATTGATTGTGAGAATTTTGTTGTTTGCAGCGATGGCTATAATACTCATGGTCACCCTTCAA TGAAAACTATCGCCAGACTTACCAAAAGATTTCCTGAGTCATTTATACACTTTACCTCGGAGAGCGACAGGATCAAAACT TTTACACAATCATTTGAAGACAGATGCCATTTCCCATTGGATAATGCCTTAGAGTTCACATATGACCTATCAAAATAA
Upstream 100 bases:
>100_bases GTAACTCTTTGACTTAATAGTCCTTTAATCTATGTCACATTAAAATCATGTTTGATTGTGTTAGAGTACACTATCCAAGT GCATAATTGTTGTTTACGTA
Downstream 100 bases:
>100_bases TATTGTATCTATAAAAGTTGGAGCACCTGAGAGCACTGGGTTTGCTTTCAAAAGTGCTTGTGGAAAAAGCAAGTATGTTA TTACTTCAAAGCATAGTATT
Product: beta-lactamase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 345; Mature: 344
Protein sequence:
>345_residues MSQLKIQFINAGVGDCTLITDLVSNKKILIDSGPSKGVGRLTVTSVLTRILGGNKDIDLAILTHNDDDHIGGFTGLITNN IVKINKIIFNTVAELEDDQFVDSGKASYRQDLNLYKTVKDTNIDIESLVVHEGSLNTIELGDITLRFISPNISKMSKLKS WAIREEKVAVKKEEERLAKSKKASKNVNYTCLDDALDAINLEDTFEPDTREPNGSSFAFILEYGDNRLLFLGDCHMDIVE AYLADQDKPQIFDLVKLSHHSSEHNNSQEFFNQIDCENFVVCSDGYNTHGHPSMKTIARLTKRFPESFIHFTSESDRIKT FTQSFEDRCHFPLDNALEFTYDLSK
Sequences:
>Translated_345_residues MSQLKIQFINAGVGDCTLITDLVSNKKILIDSGPSKGVGRLTVTSVLTRILGGNKDIDLAILTHNDDDHIGGFTGLITNN IVKINKIIFNTVAELEDDQFVDSGKASYRQDLNLYKTVKDTNIDIESLVVHEGSLNTIELGDITLRFISPNISKMSKLKS WAIREEKVAVKKEEERLAKSKKASKNVNYTCLDDALDAINLEDTFEPDTREPNGSSFAFILEYGDNRLLFLGDCHMDIVE AYLADQDKPQIFDLVKLSHHSSEHNNSQEFFNQIDCENFVVCSDGYNTHGHPSMKTIARLTKRFPESFIHFTSESDRIKT FTQSFEDRCHFPLDNALEFTYDLSK >Mature_344_residues SQLKIQFINAGVGDCTLITDLVSNKKILIDSGPSKGVGRLTVTSVLTRILGGNKDIDLAILTHNDDDHIGGFTGLITNNI VKINKIIFNTVAELEDDQFVDSGKASYRQDLNLYKTVKDTNIDIESLVVHEGSLNTIELGDITLRFISPNISKMSKLKSW AIREEKVAVKKEEERLAKSKKASKNVNYTCLDDALDAINLEDTFEPDTREPNGSSFAFILEYGDNRLLFLGDCHMDIVEA YLADQDKPQIFDLVKLSHHSSEHNNSQEFFNQIDCENFVVCSDGYNTHGHPSMKTIARLTKRFPESFIHFTSESDRIKTF TQSFEDRCHFPLDNALEFTYDLSK
Specific function: Unknown
COG id: COG2333
COG function: function code R; Predicted hydrolase (metallo-beta-lactamase superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38884; Mature: 38753
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQLKIQFINAGVGDCTLITDLVSNKKILIDSGPSKGVGRLTVTSVLTRILGGNKDIDLA CCCEEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEE ILTHNDDDHIGGFTGLITNNIVKINKIIFNTVAELEDDQFVDSGKASYRQDLNLYKTVKD EEEECCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHCCHHHEECCC TNIDIESLVVHEGSLNTIELGDITLRFISPNISKMSKLKSWAIREEKVAVKKEEERLAKS CCCCHHHEEEECCCCCEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KKASKNVNYTCLDDALDAINLEDTFEPDTREPNGSSFAFILEYGDNRLLFLGDCHMDIVE HHHCCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCHHHHH AYLADQDKPQIFDLVKLSHHSSEHNNSQEFFNQIDCENFVVCSDGYNTHGHPSMKTIARL HHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHH TKRFPESFIHFTSESDRIKTFTQSFEDRCHFPLDNALEFTYDLSK HHHCCHHHHEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCC >Mature Secondary Structure SQLKIQFINAGVGDCTLITDLVSNKKILIDSGPSKGVGRLTVTSVLTRILGGNKDIDLA CCEEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEE ILTHNDDDHIGGFTGLITNNIVKINKIIFNTVAELEDDQFVDSGKASYRQDLNLYKTVKD EEEECCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHCCHHHEECCC TNIDIESLVVHEGSLNTIELGDITLRFISPNISKMSKLKSWAIREEKVAVKKEEERLAKS CCCCHHHEEEECCCCCEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KKASKNVNYTCLDDALDAINLEDTFEPDTREPNGSSFAFILEYGDNRLLFLGDCHMDIVE HHHCCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCHHHHH AYLADQDKPQIFDLVKLSHHSSEHNNSQEFFNQIDCENFVVCSDGYNTHGHPSMKTIARL HHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHH TKRFPESFIHFTSESDRIKTFTQSFEDRCHFPLDNALEFTYDLSK HHHCCHHHHEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA