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The map label for this gene is yfjK [C]

Identifier: 119946728

GI number: 119946728

Start: 3829437

End: 3831923

Strand: Reverse

Name: yfjK [C]

Synonym: Ping_3112

Alternate gene names: 119946728

Gene position: 3831923-3829437 (Counterclockwise)

Preceding gene: 119946729

Following gene: 119946727

Centisome position: 84.04

GC content: 32.57

Gene sequence:

>2487_bases
ATGAGTGCTAATATAACTTTAATAGATAAATTAACCACAGACTCAATTAAAAGCGTTCATTTTAATGCTTTATATCAAAC
ACTTTCGATTGCTTACGCAGATAGCAAGCTTAAAATTCCGTCGTTTATAACATCAAAAAAAACTGATGATTTATGTAGAT
ATGCGGATATCTTTAGTCTGTCAGAAGAATCTGAGTATAGAGTATTAGCTTATCGTATTATTGTAAAATTACTTGGAGTC
TCGGAGAAAAAGCCTGCTTTGGGTAGTATGGCTAGGTCTATTTTCACCAAGCTTGGCCTGTTTTTTTCCGAATCAAGATT
TGATAAGGATGAACATCCGTTGCCTTACGAGCGTGAAGTTAGCAACATTCTAAAAAGAGATAGACAGAAGTTGCCTTTCG
GGAATGAAGTGTTTACAGACTCACAGTATGAAGTTTTTACTAGTTTAACTGAGCTTGATAACTTTAGTTTTTCAGGTCCA
ACGTCATTTGGCAAGTCATTTATAATTAGAAGCTATATATTTGACTGTATCAGTAATAAAAAAAATGTAGTTATTTTAGT
ACCTACCAAAGTACTCATTGAAGAATATATAAGGGAAATCAGAAAGACAATAAAAGTTGAAGGCTGGGGTAATGTAAATT
TATCAAAGAATGCACAATCCTATATTGAAGATAAGATAAATATCTTAATTTTAACTCCTGAACGATTCAATAATTTAATT
TATACCGACTTAGAACTATCAATTGATGTATTGGTTGTTGATGAAGCACACAAACTTGGTGATGATGATGAGCGATCAAT
GACATCCTTTAAAGTTATTCAAGAAACTAGAAAAAGATTGCCTACTTGTAAAGTAATCTTTAGTTCTCCTGTTATAAGTA
ATCCTTCAGTATTCTTAGAATCGTTTGGGCTAGATGGTCGAAATTCAATTGAAGCAATAGAAGGTCCAGTAACACAGAAT
TTGTTTTTTATCGATTTATTGAATAATAGTAGTCAGTTTTATAATGAAGTAAGTAAAGAATTTTATACACATACAAAAGA
GTTGAAAATTGAAGATATGTTTAGCTTCATTCGGAGCGTTACTTCTAAATCCTCACTAATCTACTGTACTTCTAAATCAG
GCTCAGTAAGTGATGCTGTATTATTTGCTGAGGACTTACCTTTATTAACGAATCCAAAATTAGTTGCAGCATCTAAAAAT
ATTAAAGAATTGATTCATGAAGAGTATTTCCTTTCTGATTTATTGTTAAAAGGCGTTGCATTTCATAATGCTGACTTACC
AAAAAATGTACGAAGTATTATCGAAAGTCTTTATCAATCTCGTGAAATAGCTTACTTGTTTTGCACATCAACTTTATTAG
AAGGTGTTAATTTACCAACAGGTAATTTGTTTTTAAGATCGTTTAAAACTAGAGGCAAAATTACTAACAAAACAAAGTTA
GATTTTTGGAATCTAGCGGGGCGTGCCGGAAGATATACCAAAGAGTTAGATGGCAACATTTTTTGTATGCGAGACACTTC
AAGTAGTTGGGGAAACATCTCAACTCTTGTTGAGAAAAAGAATGAAGTGAAAGCTGACACATCTGCATTAAAACGCTTAA
TGCGTGGTCGAAAGATTATTAATGTACTAAAGGATGGTCCATTAAATGAGGAGAAACAAGAAAGAATTATGGATCAAATA
TCTAACATGATTCTTTCAGACTATATGGAGAATAAACAAAAAAATCATCCTTCAAGTTTGATGAACTTAGTACCAAAAAA
GTTCCATAGTGGATTATTTAAAGTGTTAGAGGACAAACTTAGAGATAGTGGGATCAATGAAGTACCACGGCAGTTATTTG
CTATTGGGCATAATATATCCATTGAGCGACATATAAACGTTCTTTCCGATATTAAAGAACAGCCAGTAATATTGAGTTCA
TTAAACGGTAGCGATACTTATCCGTTGTTTGAAAGGGTCTGCAAAGTTTATAAGTTAAAGTTCTCAACAGCTCAAATTAA
TAGGCTTTACCGCATTGCTCAACAATGGATTCATGGTTTTTCATTAAAGGATATTATTAATAATTCTTTGGATAATTGTT
CAACTGTGGTTATTTATAGAGGAGGGCCTATCGAAAACTTCGACCGGACAAATAAGGCTCATGTTAACGCTATAATCAAT
GGGGTCATCTCTTCTATAGAGCATGATATTGGTTATGAATTGGAGTTATACATAAACCATTATTATCAACATCTAGTTAA
CTCTTTGGGGAGCGAGGGGGCAGGTATCAATCTTTCAACCTATCTAGAGTTAGGAACAAATGACAAGTTTGAAATATCAC
TACAAAATTATGGATTTAGTAGATCTGTTGCATCAGAGCTGATCAAGTTCTATAAGGAATTTATAAAATTTGATGATGAG
AACGTTGTTGTATCTATCGACACTGTAAATCTTCTCGCAAGATTAGGTAAGAATAGTATTGCTTTTACAGAAGTTGGTAA
TGTTTAG

Upstream 100 bases:

>100_bases
GGGGAAAACATGTTATCTGTACTTGATTCCGATCAATGAGGTCGGAGAGTTAAATAAATTGATGCATGCTAAAATCAATT
CAAATATAAACGGTTGATAT

Downstream 100 bases:

>100_bases
TTAGTATCTATCCAATAGTTAATCTCATTCAGATAGAACTTACTTAGCCACCCATTGGAACTAGCCTTACATACACACCC
ATAATAATTGGCGAATATTT

Product: ATP-dependent RNA helicase, DEAD box family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 828; Mature: 827

Protein sequence:

>828_residues
MSANITLIDKLTTDSIKSVHFNALYQTLSIAYADSKLKIPSFITSKKTDDLCRYADIFSLSEESEYRVLAYRIIVKLLGV
SEKKPALGSMARSIFTKLGLFFSESRFDKDEHPLPYEREVSNILKRDRQKLPFGNEVFTDSQYEVFTSLTELDNFSFSGP
TSFGKSFIIRSYIFDCISNKKNVVILVPTKVLIEEYIREIRKTIKVEGWGNVNLSKNAQSYIEDKINILILTPERFNNLI
YTDLELSIDVLVVDEAHKLGDDDERSMTSFKVIQETRKRLPTCKVIFSSPVISNPSVFLESFGLDGRNSIEAIEGPVTQN
LFFIDLLNNSSQFYNEVSKEFYTHTKELKIEDMFSFIRSVTSKSSLIYCTSKSGSVSDAVLFAEDLPLLTNPKLVAASKN
IKELIHEEYFLSDLLLKGVAFHNADLPKNVRSIIESLYQSREIAYLFCTSTLLEGVNLPTGNLFLRSFKTRGKITNKTKL
DFWNLAGRAGRYTKELDGNIFCMRDTSSSWGNISTLVEKKNEVKADTSALKRLMRGRKIINVLKDGPLNEEKQERIMDQI
SNMILSDYMENKQKNHPSSLMNLVPKKFHSGLFKVLEDKLRDSGINEVPRQLFAIGHNISIERHINVLSDIKEQPVILSS
LNGSDTYPLFERVCKVYKLKFSTAQINRLYRIAQQWIHGFSLKDIINNSLDNCSTVVIYRGGPIENFDRTNKAHVNAIIN
GVISSIEHDIGYELELYINHYYQHLVNSLGSEGAGINLSTYLELGTNDKFEISLQNYGFSRSVASELIKFYKEFIKFDDE
NVVVSIDTVNLLARLGKNSIAFTEVGNV

Sequences:

>Translated_828_residues
MSANITLIDKLTTDSIKSVHFNALYQTLSIAYADSKLKIPSFITSKKTDDLCRYADIFSLSEESEYRVLAYRIIVKLLGV
SEKKPALGSMARSIFTKLGLFFSESRFDKDEHPLPYEREVSNILKRDRQKLPFGNEVFTDSQYEVFTSLTELDNFSFSGP
TSFGKSFIIRSYIFDCISNKKNVVILVPTKVLIEEYIREIRKTIKVEGWGNVNLSKNAQSYIEDKINILILTPERFNNLI
YTDLELSIDVLVVDEAHKLGDDDERSMTSFKVIQETRKRLPTCKVIFSSPVISNPSVFLESFGLDGRNSIEAIEGPVTQN
LFFIDLLNNSSQFYNEVSKEFYTHTKELKIEDMFSFIRSVTSKSSLIYCTSKSGSVSDAVLFAEDLPLLTNPKLVAASKN
IKELIHEEYFLSDLLLKGVAFHNADLPKNVRSIIESLYQSREIAYLFCTSTLLEGVNLPTGNLFLRSFKTRGKITNKTKL
DFWNLAGRAGRYTKELDGNIFCMRDTSSSWGNISTLVEKKNEVKADTSALKRLMRGRKIINVLKDGPLNEEKQERIMDQI
SNMILSDYMENKQKNHPSSLMNLVPKKFHSGLFKVLEDKLRDSGINEVPRQLFAIGHNISIERHINVLSDIKEQPVILSS
LNGSDTYPLFERVCKVYKLKFSTAQINRLYRIAQQWIHGFSLKDIINNSLDNCSTVVIYRGGPIENFDRTNKAHVNAIIN
GVISSIEHDIGYELELYINHYYQHLVNSLGSEGAGINLSTYLELGTNDKFEISLQNYGFSRSVASELIKFYKEFIKFDDE
NVVVSIDTVNLLARLGKNSIAFTEVGNV
>Mature_827_residues
SANITLIDKLTTDSIKSVHFNALYQTLSIAYADSKLKIPSFITSKKTDDLCRYADIFSLSEESEYRVLAYRIIVKLLGVS
EKKPALGSMARSIFTKLGLFFSESRFDKDEHPLPYEREVSNILKRDRQKLPFGNEVFTDSQYEVFTSLTELDNFSFSGPT
SFGKSFIIRSYIFDCISNKKNVVILVPTKVLIEEYIREIRKTIKVEGWGNVNLSKNAQSYIEDKINILILTPERFNNLIY
TDLELSIDVLVVDEAHKLGDDDERSMTSFKVIQETRKRLPTCKVIFSSPVISNPSVFLESFGLDGRNSIEAIEGPVTQNL
FFIDLLNNSSQFYNEVSKEFYTHTKELKIEDMFSFIRSVTSKSSLIYCTSKSGSVSDAVLFAEDLPLLTNPKLVAASKNI
KELIHEEYFLSDLLLKGVAFHNADLPKNVRSIIESLYQSREIAYLFCTSTLLEGVNLPTGNLFLRSFKTRGKITNKTKLD
FWNLAGRAGRYTKELDGNIFCMRDTSSSWGNISTLVEKKNEVKADTSALKRLMRGRKIINVLKDGPLNEEKQERIMDQIS
NMILSDYMENKQKNHPSSLMNLVPKKFHSGLFKVLEDKLRDSGINEVPRQLFAIGHNISIERHINVLSDIKEQPVILSSL
NGSDTYPLFERVCKVYKLKFSTAQINRLYRIAQQWIHGFSLKDIINNSLDNCSTVVIYRGGPIENFDRTNKAHVNAIING
VISSIEHDIGYELELYINHYYQHLVNSLGSEGAGINLSTYLELGTNDKFEISLQNYGFSRSVASELIKFYKEFIKFDDEN
VVVSIDTVNLLARLGKNSIAFTEVGNV

Specific function: Unknown

COG id: COG1204

COG function: function code R; Superfamily II helicase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI9755332, Length=395, Percent_Identity=25.3164556962025, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR010995
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR022965 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: NA

Molecular weight: Translated: 94198; Mature: 94067

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSANITLIDKLTTDSIKSVHFNALYQTLSIAYADSKLKIPSFITSKKTDDLCRYADIFSL
CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHCC
SEESEYRVLAYRIIVKLLGVSEKKPALGSMARSIFTKLGLFFSESRFDKDEHPLPYEREV
CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
SNILKRDRQKLPFGNEVFTDSQYEVFTSLTELDNFSFSGPTSFGKSFIIRSYIFDCISNK
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
KNVVILVPTKVLIEEYIREIRKTIKVEGWGNVNLSKNAQSYIEDKINILILTPERFNNLI
CCEEEEECHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHCCCEEEEECCHHHCCEE
YTDLELSIDVLVVDEAHKLGDDDERSMTSFKVIQETRKRLPTCKVIFSSPVISNPSVFLE
EEEEEEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHH
SFGLDGRNSIEAIEGPVTQNLFFIDLLNNSSQFYNEVSKEFYTHTKELKIEDMFSFIRSV
HCCCCCCCCHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
TSKSSLIYCTSKSGSVSDAVLFAEDLPLLTNPKLVAASKNIKELIHEEYFLSDLLLKGVA
CCCCCEEEEECCCCCCCHHEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH
FHNADLPKNVRSIIESLYQSREIAYLFCTSTLLEGVNLPTGNLFLRSFKTRGKITNKTKL
HCCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCC
DFWNLAGRAGRYTKELDGNIFCMRDTSSSWGNISTLVEKKNEVKADTSALKRLMRGRKII
CHHHCCCCCCCCHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NVLKDGPLNEEKQERIMDQISNMILSDYMENKQKNHPSSLMNLVPKKFHSGLFKVLEDKL
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RDSGINEVPRQLFAIGHNISIERHINVLSDIKEQPVILSSLNGSDTYPLFERVCKVYKLK
HCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH
FSTAQINRLYRIAQQWIHGFSLKDIINNSLDNCSTVVIYRGGPIENFDRTNKAHVNAIIN
CHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHH
GVISSIEHDIGYELELYINHYYQHLVNSLGSEGAGINLSTYLELGTNDKFEISLQNYGFS
HHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEEECCCCH
RSVASELIKFYKEFIKFDDENVVVSIDTVNLLARLGKNSIAFTEVGNV
HHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCC
>Mature Secondary Structure 
SANITLIDKLTTDSIKSVHFNALYQTLSIAYADSKLKIPSFITSKKTDDLCRYADIFSL
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHCC
SEESEYRVLAYRIIVKLLGVSEKKPALGSMARSIFTKLGLFFSESRFDKDEHPLPYEREV
CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
SNILKRDRQKLPFGNEVFTDSQYEVFTSLTELDNFSFSGPTSFGKSFIIRSYIFDCISNK
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
KNVVILVPTKVLIEEYIREIRKTIKVEGWGNVNLSKNAQSYIEDKINILILTPERFNNLI
CCEEEEECHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHCCCEEEEECCHHHCCEE
YTDLELSIDVLVVDEAHKLGDDDERSMTSFKVIQETRKRLPTCKVIFSSPVISNPSVFLE
EEEEEEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHH
SFGLDGRNSIEAIEGPVTQNLFFIDLLNNSSQFYNEVSKEFYTHTKELKIEDMFSFIRSV
HCCCCCCCCHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
TSKSSLIYCTSKSGSVSDAVLFAEDLPLLTNPKLVAASKNIKELIHEEYFLSDLLLKGVA
CCCCCEEEEECCCCCCCHHEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH
FHNADLPKNVRSIIESLYQSREIAYLFCTSTLLEGVNLPTGNLFLRSFKTRGKITNKTKL
HCCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCC
DFWNLAGRAGRYTKELDGNIFCMRDTSSSWGNISTLVEKKNEVKADTSALKRLMRGRKII
CHHHCCCCCCCCHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NVLKDGPLNEEKQERIMDQISNMILSDYMENKQKNHPSSLMNLVPKKFHSGLFKVLEDKL
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RDSGINEVPRQLFAIGHNISIERHINVLSDIKEQPVILSSLNGSDTYPLFERVCKVYKLK
HCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH
FSTAQINRLYRIAQQWIHGFSLKDIINNSLDNCSTVVIYRGGPIENFDRTNKAHVNAIIN
CHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHH
GVISSIEHDIGYELELYINHYYQHLVNSLGSEGAGINLSTYLELGTNDKFEISLQNYGFS
HHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEEECCCCH
RSVASELIKFYKEFIKFDDENVVVSIDTVNLLARLGKNSIAFTEVGNV
HHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11121031 [H]