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The map label for this gene is ycaD [C]

Identifier: 119946713

GI number: 119946713

Start: 3803388

End: 3804653

Strand: Reverse

Name: ycaD [C]

Synonym: Ping_3097

Alternate gene names: 119946713

Gene position: 3804653-3803388 (Counterclockwise)

Preceding gene: 119946714

Following gene: 119946712

Centisome position: 83.44

GC content: 53.48

Gene sequence:

>1266_bases
ATGATACGAATACTTGCTCAGATCTGGCCCCTTCTACTCGGCATCGTCTTTATCATGCTGGGCAACGGTATGCATTTTAC
ACTTATCGGCCTGCGCGGAGGGATAGAAGGTTTTTCGTCGGCAGAACTGGCGATTGTGACCTCGGGATATTTCCTTGGTT
TTCTCTCTGGGGCACGTATCAGTCCGTTGATGATACGGCGTGTTGGCCATGTGCGAGTCTTCGCGGCACTTGGTAGTTTT
ATGTCGGCAGGTTTAATCGCTTTCCCACTAGTTACCGAACCCTGGGTTTGGACGGTGCTGCGGGTGATTGTCGGCTTTTG
TATGTCAGGCATTTATGTCACTGCCGAGAGTTGGCTTAACAACTCTGCGACGAATGAGACACGTGGCTCAGTACTGTCAG
CCTACATGCTCGCTCAGACTTTGGGTATCATTGGCGCTCAGGGGTTATTGACGTTGGGCGATGCAGGCACCGCTGTGCTA
TTTATTGGTGCATCGATGTTGGTGTCAATTTCTTTTGGGCCAATCCTGCTATCTGCAACCTCGGTTCCAAAGGCTGAGAT
TACTCGCCCGATGCCCTTGCGTCAGCTCTTTACGAACTCTCCACTAGGTACCGTGGGCATCTTCTTGCTGGGCAGTGTTT
ATGCAACTCAATCAGGTATGGGTGCGGTTTTTGGTACCAAAATCGGTCTCTCGGCGGAGCAGATTTCGCTGTTCATTGCG
ATGCTCTTTGCTGGAGCACTATTGCTGCAATATCCTATTGGATGGCTTTCGGACCGGATGGACAGGCGCAAGCTAATTTT
TGGGGCGGCCTCTCTCGGAGCGATATCCTGTGCATTCGCATGGTTTACTAGTGCTGGCCTCTGGCCTTTAATGGCGGCTG
CCTTCTTTGCCGGTGGGGTTACAACACCGCTTTACGCACTGTTTCTGGCATACACTAATGATTATCTTTCGGCCGAGGAT
ATGCCAGCCGCGTCTGGCGGTCTTGTTTTCACCTTTGGACTGGGCGCTATCGCGGGCCCCCTAATCACCGGTTGGGCGAT
GCATGGATTAGGCCCGTTCGCGTTCTGGCTAGTGCTTGGTGTGACCTTCGGTGTTATCGCGCTCTATGCGCTTTACCGAA
TGACACAGCGCGCGGCTGTGCCTCAGACTGAAACTGAGAGTTATCTGGGTGTGCTTCCGACTGCGTCTCCGGTAACGGTG
GAGGTCGCTGGTGCGTGGGCCGCTGACCGTGCGCAGGCTGAACGAGATTCCGAAGAGCAGTCCTGA

Upstream 100 bases:

>100_bases
AGCGATATTCAGTCTGTGGAATTATTTTCAAAAGCAATAAGGCCTAAAAAATGATTTATAGAAAGGTAATGCGAGACCAA
AGCCATCGGAAAGGAATTTC

Downstream 100 bases:

>100_bases
CGCAATGTCTTAAAACATCATTAGCCGGCAACAAAGATCGACCTTAGCGACAAAATATGATCTGTCATAATAACTGGACA
TTGCGAGGCCGATACCGGGA

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MIRILAQIWPLLLGIVFIMLGNGMHFTLIGLRGGIEGFSSAELAIVTSGYFLGFLSGARISPLMIRRVGHVRVFAALGSF
MSAGLIAFPLVTEPWVWTVLRVIVGFCMSGIYVTAESWLNNSATNETRGSVLSAYMLAQTLGIIGAQGLLTLGDAGTAVL
FIGASMLVSISFGPILLSATSVPKAEITRPMPLRQLFTNSPLGTVGIFLLGSVYATQSGMGAVFGTKIGLSAEQISLFIA
MLFAGALLLQYPIGWLSDRMDRRKLIFGAASLGAISCAFAWFTSAGLWPLMAAAFFAGGVTTPLYALFLAYTNDYLSAED
MPAASGGLVFTFGLGAIAGPLITGWAMHGLGPFAFWLVLGVTFGVIALYALYRMTQRAAVPQTETESYLGVLPTASPVTV
EVAGAWAADRAQAERDSEEQS

Sequences:

>Translated_421_residues
MIRILAQIWPLLLGIVFIMLGNGMHFTLIGLRGGIEGFSSAELAIVTSGYFLGFLSGARISPLMIRRVGHVRVFAALGSF
MSAGLIAFPLVTEPWVWTVLRVIVGFCMSGIYVTAESWLNNSATNETRGSVLSAYMLAQTLGIIGAQGLLTLGDAGTAVL
FIGASMLVSISFGPILLSATSVPKAEITRPMPLRQLFTNSPLGTVGIFLLGSVYATQSGMGAVFGTKIGLSAEQISLFIA
MLFAGALLLQYPIGWLSDRMDRRKLIFGAASLGAISCAFAWFTSAGLWPLMAAAFFAGGVTTPLYALFLAYTNDYLSAED
MPAASGGLVFTFGLGAIAGPLITGWAMHGLGPFAFWLVLGVTFGVIALYALYRMTQRAAVPQTETESYLGVLPTASPVTV
EVAGAWAADRAQAERDSEEQS
>Mature_421_residues
MIRILAQIWPLLLGIVFIMLGNGMHFTLIGLRGGIEGFSSAELAIVTSGYFLGFLSGARISPLMIRRVGHVRVFAALGSF
MSAGLIAFPLVTEPWVWTVLRVIVGFCMSGIYVTAESWLNNSATNETRGSVLSAYMLAQTLGIIGAQGLLTLGDAGTAVL
FIGASMLVSISFGPILLSATSVPKAEITRPMPLRQLFTNSPLGTVGIFLLGSVYATQSGMGAVFGTKIGLSAEQISLFIA
MLFAGALLLQYPIGWLSDRMDRRKLIFGAASLGAISCAFAWFTSAGLWPLMAAAFFAGGVTTPLYALFLAYTNDYLSAED
MPAASGGLVFTFGLGAIAGPLITGWAMHGLGPFAFWLVLGVTFGVIALYALYRMTQRAAVPQTETESYLGVLPTASPVTV
EVAGAWAADRAQAERDSEEQS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=329, Percent_Identity=26.1398176291793, Blast_Score=91, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 44507; Mature: 44507

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRILAQIWPLLLGIVFIMLGNGMHFTLIGLRGGIEGFSSAELAIVTSGYFLGFLSGARI
CHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEECCHHHHHHCCCCC
SPLMIRRVGHVRVFAALGSFMSAGLIAFPLVTEPWVWTVLRVIVGFCMSGIYVTAESWLN
CHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHCC
NSATNETRGSVLSAYMLAQTLGIIGAQGLLTLGDAGTAVLFIGASMLVSISFGPILLSAT
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHEECCCCEEEEEC
SVPKAEITRPMPLRQLFTNSPLGTVGIFLLGSVYATQSGMGAVFGTKIGLSAEQISLFIA
CCCHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHH
MLFAGALLLQYPIGWLSDRMDRRKLIFGAASLGAISCAFAWFTSAGLWPLMAAAFFAGGV
HHHHHHHHHHCCHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
TTPLYALFLAYTNDYLSAEDMPAASGGLVFTFGLGAIAGPLITGWAMHGLGPFAFWLVLG
HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCHHHHHHHHHH
VTFGVIALYALYRMTQRAAVPQTETESYLGVLPTASPVTVEVAGAWAADRAQAERDSEEQ
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEECCCHHHHHHHHCCCCCC
S
C
>Mature Secondary Structure
MIRILAQIWPLLLGIVFIMLGNGMHFTLIGLRGGIEGFSSAELAIVTSGYFLGFLSGARI
CHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEECCHHHHHHCCCCC
SPLMIRRVGHVRVFAALGSFMSAGLIAFPLVTEPWVWTVLRVIVGFCMSGIYVTAESWLN
CHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHCC
NSATNETRGSVLSAYMLAQTLGIIGAQGLLTLGDAGTAVLFIGASMLVSISFGPILLSAT
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHEECCCCEEEEEC
SVPKAEITRPMPLRQLFTNSPLGTVGIFLLGSVYATQSGMGAVFGTKIGLSAEQISLFIA
CCCHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHH
MLFAGALLLQYPIGWLSDRMDRRKLIFGAASLGAISCAFAWFTSAGLWPLMAAAFFAGGV
HHHHHHHHHHCCHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
TTPLYALFLAYTNDYLSAEDMPAASGGLVFTFGLGAIAGPLITGWAMHGLGPFAFWLVLG
HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCHHHHHHHHHH
VTFGVIALYALYRMTQRAAVPQTETESYLGVLPTASPVTVEVAGAWAADRAQAERDSEEQ
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEECCCHHHHHHHHCCCCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA