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The map label for this gene is cspV [H]

Identifier: 119946712

GI number: 119946712

Start: 3802324

End: 3802533

Strand: Reverse

Name: cspV [H]

Synonym: Ping_3095

Alternate gene names: 119946712

Gene position: 3802533-3802324 (Counterclockwise)

Preceding gene: 119946713

Following gene: 119946711

Centisome position: 83.4

GC content: 41.43

Gene sequence:

>210_bases
ATGTCTAATAAAGAACAAGGAACCGTTAAATGGTTCAACGAAGCGAAAGGTTTTGGTTTTATCGAACAAGCATCTGGTCC
AGATGTATTCGTTCACTTTAGTGCTATTGCAAGCGAAGGTTTCAAAACGTTAGCTGAAGGCCAAAAAGTAGAATTCTCTG
TAAGCCAAGGTCAAAAAGGCCCGCAAGCAGACAGTATCGTCGGGCTTTAA

Upstream 100 bases:

>100_bases
ATTGATAATACCTCGCTCTGTAGTTTTTAAGTTCCAGTCTATTTTTACGCTATTCAAGCCTTTTGAAGGTAACCTCACAT
TAAAATTACAGGATATTATT

Downstream 100 bases:

>100_bases
TTTCTATGATATTTTAGCTCCCATACAGAGCTAATTTAATAGTTAGAAAATGGTAAACCTTTGCGGGTTTGCCATTTTTT
TTGTCAATTGAAAAATAAGA

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSNKEQGTVKWFNEAKGFGFIEQASGPDVFVHFSAIASEGFKTLAEGQKVEFSVSQGQKGPQADSIVGL

Sequences:

>Translated_69_residues
MSNKEQGTVKWFNEAKGFGFIEQASGPDVFVHFSAIASEGFKTLAEGQKVEFSVSQGQKGPQADSIVGL
>Mature_68_residues
SNKEQGTVKWFNEAKGFGFIEQASGPDVFVHFSAIASEGFKTLAEGQKVEFSVSQGQKGPQADSIVGL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=62.8571428571429, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI1786841, Length=67, Percent_Identity=62.6865671641791, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=64.1791044776119, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=58.8235294117647, Blast_Score=82, Evalue=7e-18,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=61.4285714285714, Blast_Score=82, Evalue=8e-18,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=57.1428571428571, Blast_Score=80, Evalue=3e-17,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=56.25, Blast_Score=74, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7380; Mature: 7249

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKEQGTVKWFNEAKGFGFIEQASGPDVFVHFSAIASEGFKTLAEGQKVEFSVSQGQKG
CCCCCCCCEEEECCCCCCCEEECCCCCEEEEEHHHHHHHHHHHHHCCCEEEEECCCCCCC
PQADSIVGL
CCCCCCCCC
>Mature Secondary Structure 
SNKEQGTVKWFNEAKGFGFIEQASGPDVFVHFSAIASEGFKTLAEGQKVEFSVSQGQKG
CCCCCCCEEEECCCCCCCEEECCCCCEEEEEHHHHHHHHHHHHHCCCEEEEECCCCCCC
PQADSIVGL
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]