Definition | Psychromonas ingrahamii 37, complete genome. |
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Accession | NC_008709 |
Length | 4,559,598 |
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The map label for this gene is 119945650
Identifier: 119945650
GI number: 119945650
Start: 2386997
End: 2388367
Strand: Reverse
Name: 119945650
Synonym: Ping_1963
Alternate gene names: NA
Gene position: 2388367-2386997 (Counterclockwise)
Preceding gene: 119945651
Following gene: 119945649
Centisome position: 52.38
GC content: 40.19
Gene sequence:
>1371_bases ATGCTTAAAAAATCACTTCTTGCCGTTGCACTTGCTTCGATTCTAACCGGTTGTGGTACTGATACAGGAACAACTGGTAT AGGAACATCCGATGGTACAAATGGAACAGCAACTACTTATACCGTTATTGATGGTTATTTAAGCTATGCTGAAGTTTCTA TTCTTTTATCCGATGGCATCACAGAAAAGTTTATTGGTGATACGGGTGTCAATGGTAAAATATCGATCCCGGCTCAAGAT CAAGATTATACGGTGATAGCGAAGATCATTGCAGGCAAAACGATTGACGCTGATAACCCTGGAATACCTGTTGCAAAAAG TTATGAAATGCGCGGCACAGTAGATTCTAACGTTGTGACTCCTTTTACAACCCTTGCTAATACTAATGTGATGACATTAA CAGCGCTTGCCGCTGAGCTGCAACTCGACGAAGCGGACGTAAGCGGTGATTATATGAACACACCGGACGGTAGAGCACGT TTTGTGGCGCGCGGCCTGGCCAAAAAATTCGATGATGATAGCAGCAATGATCATGATGATGCTGATGGCTTAAAAACCTA TGCAAACGATTCAGTTTCTTATATTGACACTAATTTTACTGATAATGATGATCTTGACGAAGTTGAACTGGATGATAATA GCAATGATGGTAACTGGAGCCATCACGATCGTATTGCCGGCGTTGTCGATTTTATTCAAACTCCCAGCTATCTTGCTAGC TTTAATCAAGCACAGTTTAACGACGAAGGTATTTTAAGGGCATCATTTTCCCTTACTGATAACACAGTGACATTAGATCA ATACGTTTCTGGGTTAGTGCCACAGAATTCACGAACGGCTGATTATAGAATAGACGAAAATAAAATTATCATTAACCAAG GCCAAGGTAGTGATGAGGATGAATTTATCTATATGGCTAATAAGTTCGCGTTAGCTGTGACCTCTGAGTATGATCTTTTG GTTTGGTCTAAGTCAGATCCAAAAGTTCAGCAAACAACAGCGTTTACTGCAACTGAATTAGACGGTCAAACCTGGCATTA TGTTGCCGATGACTCTACCTCAAAAAAACCGAAAATTATGAATGCAGCGTTGACCTTCTCTGCTATTACAGGAAAAGTCA CTATCAACACGCATAAAAATACTGATCCAGTGGTAGATGCACCATACTCTGTGGACTCGAATGGTAAATATTCTATTGAT CTACCAGCTTCAATTACCGATGGGAACGGAATGACGCTTACGTTTAGCAAAATGGTAGGTAACGAGGACATGATTATTAT TATGGATAATTTGGGTAAACCCGCCTTACTGACTGCCGATAAAAAATTCGCTGATAGTATTGTTCATAAATGGACTGATG TTGCTGAATAA
Upstream 100 bases:
>100_bases CGCGTAAAGTTTTGATTTTTGGTTGATTTATTGATTTAATTGTTGAGCTTTTTTTTATTTATAGTCGCATTTTCAATCAT TAATCTTAAAGGGAATTACC
Downstream 100 bases:
>100_bases TACACTTTGTTGTAACTAACATAAGGCCGCCCTATGGAGTATATAACCTAGGGTGGCTTTTTTTATTTTAGTAAATATGC TGCTGAATATATTGCCCGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 456; Mature: 456
Protein sequence:
>456_residues MLKKSLLAVALASILTGCGTDTGTTGIGTSDGTNGTATTYTVIDGYLSYAEVSILLSDGITEKFIGDTGVNGKISIPAQD QDYTVIAKIIAGKTIDADNPGIPVAKSYEMRGTVDSNVVTPFTTLANTNVMTLTALAAELQLDEADVSGDYMNTPDGRAR FVARGLAKKFDDDSSNDHDDADGLKTYANDSVSYIDTNFTDNDDLDEVELDDNSNDGNWSHHDRIAGVVDFIQTPSYLAS FNQAQFNDEGILRASFSLTDNTVTLDQYVSGLVPQNSRTADYRIDENKIIINQGQGSDEDEFIYMANKFALAVTSEYDLL VWSKSDPKVQQTTAFTATELDGQTWHYVADDSTSKKPKIMNAALTFSAITGKVTINTHKNTDPVVDAPYSVDSNGKYSID LPASITDGNGMTLTFSKMVGNEDMIIIMDNLGKPALLTADKKFADSIVHKWTDVAE
Sequences:
>Translated_456_residues MLKKSLLAVALASILTGCGTDTGTTGIGTSDGTNGTATTYTVIDGYLSYAEVSILLSDGITEKFIGDTGVNGKISIPAQD QDYTVIAKIIAGKTIDADNPGIPVAKSYEMRGTVDSNVVTPFTTLANTNVMTLTALAAELQLDEADVSGDYMNTPDGRAR FVARGLAKKFDDDSSNDHDDADGLKTYANDSVSYIDTNFTDNDDLDEVELDDNSNDGNWSHHDRIAGVVDFIQTPSYLAS FNQAQFNDEGILRASFSLTDNTVTLDQYVSGLVPQNSRTADYRIDENKIIINQGQGSDEDEFIYMANKFALAVTSEYDLL VWSKSDPKVQQTTAFTATELDGQTWHYVADDSTSKKPKIMNAALTFSAITGKVTINTHKNTDPVVDAPYSVDSNGKYSID LPASITDGNGMTLTFSKMVGNEDMIIIMDNLGKPALLTADKKFADSIVHKWTDVAE >Mature_456_residues MLKKSLLAVALASILTGCGTDTGTTGIGTSDGTNGTATTYTVIDGYLSYAEVSILLSDGITEKFIGDTGVNGKISIPAQD QDYTVIAKIIAGKTIDADNPGIPVAKSYEMRGTVDSNVVTPFTTLANTNVMTLTALAAELQLDEADVSGDYMNTPDGRAR FVARGLAKKFDDDSSNDHDDADGLKTYANDSVSYIDTNFTDNDDLDEVELDDNSNDGNWSHHDRIAGVVDFIQTPSYLAS FNQAQFNDEGILRASFSLTDNTVTLDQYVSGLVPQNSRTADYRIDENKIIINQGQGSDEDEFIYMANKFALAVTSEYDLL VWSKSDPKVQQTTAFTATELDGQTWHYVADDSTSKKPKIMNAALTFSAITGKVTINTHKNTDPVVDAPYSVDSNGKYSID LPASITDGNGMTLTFSKMVGNEDMIIIMDNLGKPALLTADKKFADSIVHKWTDVAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49221; Mature: 49221
Theoretical pI: Translated: 4.06; Mature: 4.06
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKKSLLAVALASILTGCGTDTGTTGIGTSDGTNGTATTYTVIDGYLSYAEVSILLSDGI CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCEEEEEEEEECCC TEKFIGDTGVNGKISIPAQDQDYTVIAKIIAGKTIDADNPGIPVAKSYEMRGTVDSNVVT CHHHCCCCCCCCEEECCCCCCCCEEEEEECCCCEECCCCCCCCCEECEEECCCCCCCCCC PFTTLANTNVMTLTALAAELQLDEADVSGDYMNTPDGRARFVARGLAKKFDDDSSNDHDD CCHHHCCCCEEEEEEEHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC ADGLKTYANDSVSYIDTNFTDNDDLDEVELDDNSNDGNWSHHDRIAGVVDFIQTPSYLAS CCHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHH FNQAQFNDEGILRASFSLTDNTVTLDQYVSGLVPQNSRTADYRIDENKIIINQGQGSDED CCCCCCCCCCEEEEEEEECCCEEEHHHHHHCCCCCCCCCCCEEECCCEEEEECCCCCCCC EFIYMANKFALAVTSEYDLLVWSKSDPKVQQTTAFTATELDGQTWHYVADDSTSKKPKIM CEEEEEEEEEEEEECCCEEEEECCCCCCEEHEEEEEEEECCCCEEEEEECCCCCCCCEEE NAALTFSAITGKVTINTHKNTDPVVDAPYSVDSNGKYSIDLPASITDGNGMTLTFSKMVG EEEEEEEEEEEEEEEECCCCCCCCEECCCCCCCCCEEEEECCCEEECCCCEEEEEEHHCC NEDMIIIMDNLGKPALLTADKKFADSIVHKWTDVAE CCCEEEEECCCCCCEEEECCHHHHHHHHHHHHHCCC >Mature Secondary Structure MLKKSLLAVALASILTGCGTDTGTTGIGTSDGTNGTATTYTVIDGYLSYAEVSILLSDGI CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCEEEEEEEEECCC TEKFIGDTGVNGKISIPAQDQDYTVIAKIIAGKTIDADNPGIPVAKSYEMRGTVDSNVVT CHHHCCCCCCCCEEECCCCCCCCEEEEEECCCCEECCCCCCCCCEECEEECCCCCCCCCC PFTTLANTNVMTLTALAAELQLDEADVSGDYMNTPDGRARFVARGLAKKFDDDSSNDHDD CCHHHCCCCEEEEEEEHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC ADGLKTYANDSVSYIDTNFTDNDDLDEVELDDNSNDGNWSHHDRIAGVVDFIQTPSYLAS CCHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHH FNQAQFNDEGILRASFSLTDNTVTLDQYVSGLVPQNSRTADYRIDENKIIINQGQGSDED CCCCCCCCCCEEEEEEEECCCEEEHHHHHHCCCCCCCCCCCEEECCCEEEEECCCCCCCC EFIYMANKFALAVTSEYDLLVWSKSDPKVQQTTAFTATELDGQTWHYVADDSTSKKPKIM CEEEEEEEEEEEEECCCEEEEECCCCCCEEHEEEEEEEECCCCEEEEEECCCCCCCCEEE NAALTFSAITGKVTINTHKNTDPVVDAPYSVDSNGKYSIDLPASITDGNGMTLTFSKMVG EEEEEEEEEEEEEEEECCCCCCCCEECCCCCCCCCEEEEECCCEEECCCCEEEEEEHHCC NEDMIIIMDNLGKPALLTADKKFADSIVHKWTDVAE CCCEEEEECCCCCCEEEECCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA