Definition | Psychromonas ingrahamii 37, complete genome. |
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Accession | NC_008709 |
Length | 4,559,598 |
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The map label for this gene is 119945648
Identifier: 119945648
GI number: 119945648
Start: 2383691
End: 2384998
Strand: Reverse
Name: 119945648
Synonym: Ping_1960
Alternate gene names: NA
Gene position: 2384998-2383691 (Counterclockwise)
Preceding gene: 119945649
Following gene: 119945643
Centisome position: 52.31
GC content: 38.69
Gene sequence:
>1308_bases ATGCTTAAAAAATCTCTTCTTGCTGTTGCACTTGCTTCCATTCTAACCGGTTGTGGAGGTTCATCTGATGGTACAGATTC AGGGTCAACTGACACAGGATCAACCACTTATACCGTTATTGATGGTTATTTAAGTGCTGCTGAAGTTTATGTTCTTTCAC CCGATGGTGGCACTGAAATACTTATTGGTGAGACCGATGCCAATGGCAAAATACAAATAGAAGCTAAATATAAAGGTTAT ACTGTGATAGCGAAGATTATTGCAGGTAAAACGACTGACAGTGATAGCGCAGGATTTGTTGCAAAAAGTTATGAAATGCG CAGTACAGTGGATTCTACCGTGGTGACTCCTTTTACAACCCTTGCTAATATTAGTGTGATGACATTAACAGCGCTTGCCG CTGAGCTGCAACTCGACGAAGCAGACGTAAGCGGTGATTATGTCAAGTCAACGGACGGTAAAGCACATCTAGTGGCACGT GGCCTGGCCAAAAAATTAGATGATGACAATGATGATGATGATGCGCCTGGTTTAAGAGCCTATGCAGGCGAATCGGTTTC TTATATTGATACTAATTTCACTGAGAATGATGATCTGAAAGAAGTTGAACTGAATGATGATAACTCGAGCCATCACGCTC GTATTGCCAACATTGTCGATTTTATCGAAGATGGTAAAACATTCTATGGCACCAGTTTTAGTCAATATTATTCTTCGATA GAAGGTATTATGGAAATATCACTTGTTGACGGTAAAGGAACATCAACATATAACGATACAAATAAAACCGATGATACTTT TAACTACACTATTGACAATAATAAAGTAATGATTGACGGTGTTAGTGATGAGTATATCTATGTTTCTAAAGAATTAGTAC TGTCGGTGACAGCTGACAATGATCTTTTTGTTTACTCTAAGGCAGATTTAAACAGCACAACTGGCTTTACTGCAGATGAG ATACAAGGTAAAACTTGGTACGTCATGAATGATACTAACACTGCAGGGACACAAGCAATTGAGATCTTCACTGCAAGCCT TACTCTCCATGCAACAAATCAGACATTAACAGCTGCTTATGATGAAGAGGTGCAAAATGGTACTTATACATTAATAAACG GTACCCTTGCACTTACAATAGAAAATGATGCAGGGCCATCTGATTACCTGGAGTTTAGAAAAGGTGCTGGTAATGAAGAC ATGATTATTGCTATGGAAGTGAATTCTGCAACGACGCCTATCATATTTTCTACTGAAAAAAATTTCGTATCGACTCTCGC TGGTAAATGGGCAATGTTATCTAAATAA
Upstream 100 bases:
>100_bases AAACATCTTGATTTTTGGTTTGTTTTTATTTACATTTAAAATTAAATTTTTTTTCATTCACATTTGCGTTTTTAATGATT AATGACTATAGGAAATTACC
Downstream 100 bases:
>100_bases TCGTTTAATTAAAATAACATAAGGCCGCCCTATGGAGTATATAACCTAGAGCGGCCTTTTTTATTTTAGTAAATACGCAT CTGCGTATCGGGATCAAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 435; Mature: 435
Protein sequence:
>435_residues MLKKSLLAVALASILTGCGGSSDGTDSGSTDTGSTTYTVIDGYLSAAEVYVLSPDGGTEILIGETDANGKIQIEAKYKGY TVIAKIIAGKTTDSDSAGFVAKSYEMRSTVDSTVVTPFTTLANISVMTLTALAAELQLDEADVSGDYVKSTDGKAHLVAR GLAKKLDDDNDDDDAPGLRAYAGESVSYIDTNFTENDDLKEVELNDDNSSHHARIANIVDFIEDGKTFYGTSFSQYYSSI EGIMEISLVDGKGTSTYNDTNKTDDTFNYTIDNNKVMIDGVSDEYIYVSKELVLSVTADNDLFVYSKADLNSTTGFTADE IQGKTWYVMNDTNTAGTQAIEIFTASLTLHATNQTLTAAYDEEVQNGTYTLINGTLALTIENDAGPSDYLEFRKGAGNED MIIAMEVNSATTPIIFSTEKNFVSTLAGKWAMLSK
Sequences:
>Translated_435_residues MLKKSLLAVALASILTGCGGSSDGTDSGSTDTGSTTYTVIDGYLSAAEVYVLSPDGGTEILIGETDANGKIQIEAKYKGY TVIAKIIAGKTTDSDSAGFVAKSYEMRSTVDSTVVTPFTTLANISVMTLTALAAELQLDEADVSGDYVKSTDGKAHLVAR GLAKKLDDDNDDDDAPGLRAYAGESVSYIDTNFTENDDLKEVELNDDNSSHHARIANIVDFIEDGKTFYGTSFSQYYSSI EGIMEISLVDGKGTSTYNDTNKTDDTFNYTIDNNKVMIDGVSDEYIYVSKELVLSVTADNDLFVYSKADLNSTTGFTADE IQGKTWYVMNDTNTAGTQAIEIFTASLTLHATNQTLTAAYDEEVQNGTYTLINGTLALTIENDAGPSDYLEFRKGAGNED MIIAMEVNSATTPIIFSTEKNFVSTLAGKWAMLSK >Mature_435_residues MLKKSLLAVALASILTGCGGSSDGTDSGSTDTGSTTYTVIDGYLSAAEVYVLSPDGGTEILIGETDANGKIQIEAKYKGY TVIAKIIAGKTTDSDSAGFVAKSYEMRSTVDSTVVTPFTTLANISVMTLTALAAELQLDEADVSGDYVKSTDGKAHLVAR GLAKKLDDDNDDDDAPGLRAYAGESVSYIDTNFTENDDLKEVELNDDNSSHHARIANIVDFIEDGKTFYGTSFSQYYSSI EGIMEISLVDGKGTSTYNDTNKTDDTFNYTIDNNKVMIDGVSDEYIYVSKELVLSVTADNDLFVYSKADLNSTTGFTADE IQGKTWYVMNDTNTAGTQAIEIFTASLTLHATNQTLTAAYDEEVQNGTYTLINGTLALTIENDAGPSDYLEFRKGAGNED MIIAMEVNSATTPIIFSTEKNFVSTLAGKWAMLSK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46659; Mature: 46659
Theoretical pI: Translated: 3.96; Mature: 3.96
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKKSLLAVALASILTGCGGSSDGTDSGSTDTGSTTYTVIDGYLSAAEVYVLSPDGGTEI CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEE LIGETDANGKIQIEAKYKGYTVIAKIIAGKTTDSDSAGFVAKSYEMRSTVDSTVVTPFTT EEEECCCCCEEEEEEEECCEEEEEEEHHCCCCCCCCCCEEEECCHHHHCCCCCEECCHHH LANISVMTLTALAAELQLDEADVSGDYVKSTDGKAHLVARGLAKKLDDDNDDDDAPGLRA HHCCHHHHHHHHHHHEEECCCCCCCCEEECCCCCEEHHHHHHHHHCCCCCCCCCCCCCEE YAGESVSYIDTNFTENDDLKEVELNDDNSSHHARIANIVDFIEDGKTFYGTSFSQYYSSI CCCCCEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHH EGIMEISLVDGKGTSTYNDTNKTDDTFNYTIDNNKVMIDGVSDEYIYVSKELVLSVTADN CCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCEEEEEEEEEEEEECCC DLFVYSKADLNSTTGFTADEIQGKTWYVMNDTNTAGTQAIEIFTASLTLHATNQTLTAAY CEEEEEECCCCCCCCCCHHHCCCCEEEEEECCCCCCCEEEEEEEEEEEEEECCCEEEEEE DEEVQNGTYTLINGTLALTIENDAGPSDYLEFRKGAGNEDMIIAMEVNSATTPIIFSTEK HHHHCCCEEEEEEEEEEEEEECCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCEEEECCH NFVSTLAGKWAMLSK HHHHHHHCCEEECCC >Mature Secondary Structure MLKKSLLAVALASILTGCGGSSDGTDSGSTDTGSTTYTVIDGYLSAAEVYVLSPDGGTEI CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEE LIGETDANGKIQIEAKYKGYTVIAKIIAGKTTDSDSAGFVAKSYEMRSTVDSTVVTPFTT EEEECCCCCEEEEEEEECCEEEEEEEHHCCCCCCCCCCEEEECCHHHHCCCCCEECCHHH LANISVMTLTALAAELQLDEADVSGDYVKSTDGKAHLVARGLAKKLDDDNDDDDAPGLRA HHCCHHHHHHHHHHHEEECCCCCCCCEEECCCCCEEHHHHHHHHHCCCCCCCCCCCCCEE YAGESVSYIDTNFTENDDLKEVELNDDNSSHHARIANIVDFIEDGKTFYGTSFSQYYSSI CCCCCEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHH EGIMEISLVDGKGTSTYNDTNKTDDTFNYTIDNNKVMIDGVSDEYIYVSKELVLSVTADN CCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCEEEEEEEEEEEEECCC DLFVYSKADLNSTTGFTADEIQGKTWYVMNDTNTAGTQAIEIFTASLTLHATNQTLTAAY CEEEEEECCCCCCCCCCHHHCCCCEEEEEECCCCCCCEEEEEEEEEEEEEECCCEEEEEE DEEVQNGTYTLINGTLALTIENDAGPSDYLEFRKGAGNEDMIIAMEVNSATTPIIFSTEK HHHHCCCEEEEEEEEEEEEEECCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCEEEECCH NFVSTLAGKWAMLSK HHHHHHHCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA