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The map label for this gene is pep1B [H]

Identifier: 119945642

GI number: 119945642

Start: 2375936

End: 2377237

Strand: Reverse

Name: pep1B [H]

Synonym: Ping_1954

Alternate gene names: 119945642

Gene position: 2377237-2375936 (Counterclockwise)

Preceding gene: 119945643

Following gene: 119945641

Centisome position: 52.14

GC content: 44.24

Gene sequence:

>1302_bases
ATGACAAAAGGTATACGTGCTTATAACTTATATCCAAAACTTGTTGGATCGATGAATATGTGGATCACACATTTTGATCG
TATCCAAGCCATGAATTTTGACTGGATCTATATTAATCCAATCAATTATCCCGGCTTTTCCGGATCAGATTACTCGATAA
AAAATTATTATCATTATCATCCGCTTTACGTCACAGGAGAGATGGATTTCGAGAACCCAGAAGCGCATGTCGAGAAGGGC
AACAAGCTTCTGAAAAATGTATGCAAAGAAGCCGAGCAACGTGGAATGAAGATCATGATGGATCTGGTGATCAATCATAC
CGCTTTTGATTCGCCTCTTAGCGAAGAACATCCGGACTGGTACGAGCGTGATATTGACGGTCAACTGAAACACCCCGGTG
CGCAGGATGGTGAGAATTGGGTCGAGTGGAAAGATCTGGCCCAGATTAACAACGCCCATTCCAGCGACCGCGATAATCTC
TGGAACTACTGGCTAGAAATGATGCTGTTTTATTTGGATCTGGGGATTCGAGGATTCCGTTGCGACGCGGCCTATCATGT
CCCGAGCGAATTGTGGCACTTCCTCATTCCACGCATTAAAGAAAAATATCCTAACGCAATATTTTTGGCAGAAACCCTGG
GTTGTTCATCACAACAGTCCGTTGATATTGCTGAGGCAGGTTTCGATTTTATTACCAACAGCTTTAAATGGTGGGATTTA
AAAGAGCAGTGGTTTCTGGAGCAGAACTGGGAATACAGTCGTCATGCCTCGTCGGTCTCCTTTCCAGAAAATCATGACAC
GATCCGCAGCGCCGATCAATTCGGCGGCAATCAGTACCAGGCACTTTTGCGCTACGAATTGGGGGCTTACATCTGTTCCA
GTATTTCCACTACTATCGGCTTCGAATATGGATTTCAGCGGCAAATTGATGTTGTCCAAGCCAATCCCTCCTGGTGGGAA
CCTATTTGCTACGATATTTCCGATGACATTGCAAAAATCAACAAAATCAAGGCGAGTTACGATGTTCTTCAGGAAGATAA
TGGAATCGAAATGCTCCAGTTGAACGATCGACACGTCATCGGTTTTACTAAAGAAAGCCGTAACGGGCAGGAAAAAATTA
TGATGCTGGCGAATCCCGATGGTCATAGTAGTTATAGGGTTCGAGAGTCGAATGTCTACGGCATCATGGGATCTGATAAG
GTGAAAGATATTTCCCGCAGCCGCCGAATGAAAGACGTCCCGGCATTTCTGGAATACAACCTTCTCCCAGGAGAAGTAAA
GTTACTATATGTAAAACTATAA

Upstream 100 bases:

>100_bases
CCATATTTAAAAAGTGGTCTATTGTTGTTAATAGTGGTTGGTTAAATAAAATGTAACATTTGGTTTGCACTTTCGCGTAT
TAGCTTACTAAGGAAGCATC

Downstream 100 bases:

>100_bases
ATTGACGTGTTGGCGTATTGTGATTAATTAACAGTAAAAAAATAATTAAGTGAGCACATTGTAAAACAGACTTAAGTCCT
TTGCCTGTTGATTTAAACGA

Product: alpha amylase, catalytic region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 432

Protein sequence:

>433_residues
MTKGIRAYNLYPKLVGSMNMWITHFDRIQAMNFDWIYINPINYPGFSGSDYSIKNYYHYHPLYVTGEMDFENPEAHVEKG
NKLLKNVCKEAEQRGMKIMMDLVINHTAFDSPLSEEHPDWYERDIDGQLKHPGAQDGENWVEWKDLAQINNAHSSDRDNL
WNYWLEMMLFYLDLGIRGFRCDAAYHVPSELWHFLIPRIKEKYPNAIFLAETLGCSSQQSVDIAEAGFDFITNSFKWWDL
KEQWFLEQNWEYSRHASSVSFPENHDTIRSADQFGGNQYQALLRYELGAYICSSISTTIGFEYGFQRQIDVVQANPSWWE
PICYDISDDIAKINKIKASYDVLQEDNGIEMLQLNDRHVIGFTKESRNGQEKIMMLANPDGHSSYRVRESNVYGIMGSDK
VKDISRSRRMKDVPAFLEYNLLPGEVKLLYVKL

Sequences:

>Translated_433_residues
MTKGIRAYNLYPKLVGSMNMWITHFDRIQAMNFDWIYINPINYPGFSGSDYSIKNYYHYHPLYVTGEMDFENPEAHVEKG
NKLLKNVCKEAEQRGMKIMMDLVINHTAFDSPLSEEHPDWYERDIDGQLKHPGAQDGENWVEWKDLAQINNAHSSDRDNL
WNYWLEMMLFYLDLGIRGFRCDAAYHVPSELWHFLIPRIKEKYPNAIFLAETLGCSSQQSVDIAEAGFDFITNSFKWWDL
KEQWFLEQNWEYSRHASSVSFPENHDTIRSADQFGGNQYQALLRYELGAYICSSISTTIGFEYGFQRQIDVVQANPSWWE
PICYDISDDIAKINKIKASYDVLQEDNGIEMLQLNDRHVIGFTKESRNGQEKIMMLANPDGHSSYRVRESNVYGIMGSDK
VKDISRSRRMKDVPAFLEYNLLPGEVKLLYVKL
>Mature_432_residues
TKGIRAYNLYPKLVGSMNMWITHFDRIQAMNFDWIYINPINYPGFSGSDYSIKNYYHYHPLYVTGEMDFENPEAHVEKGN
KLLKNVCKEAEQRGMKIMMDLVINHTAFDSPLSEEHPDWYERDIDGQLKHPGAQDGENWVEWKDLAQINNAHSSDRDNLW
NYWLEMMLFYLDLGIRGFRCDAAYHVPSELWHFLIPRIKEKYPNAIFLAETLGCSSQQSVDIAEAGFDFITNSFKWWDLK
EQWFLEQNWEYSRHASSVSFPENHDTIRSADQFGGNQYQALLRYELGAYICSSISTTIGFEYGFQRQIDVVQANPSWWEP
ICYDISDDIAKINKIKASYDVLQEDNGIEMLQLNDRHVIGFTKESRNGQEKIMMLANPDGHSSYRVRESNVYGIMGSDKV
KDISRSRRMKDVPAFLEYNLLPGEVKLLYVKL

Specific function: Could convert glycogen into units that may be subsequently converted into trehalose [H]

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family. GlgE subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021828
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF11896 DUF3416 [H]

EC number: NA

Molecular weight: Translated: 50609; Mature: 50478

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKGIRAYNLYPKLVGSMNMWITHFDRIQAMNFDWIYINPINYPGFSGSDYSIKNYYHYH
CCCCCEEEECCHHHHCCHHHHHHHHHHHEEECCCEEEEECCCCCCCCCCCCEECCEEEEC
PLYVTGEMDFENPEAHVEKGNKLLKNVCKEAEQRGMKIMMDLVINHTAFDSPLSEEHPDW
CEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHCCCCCCCCCCCCCCH
YERDIDGQLKHPGAQDGENWVEWKDLAQINNAHSSDRDNLWNYWLEMMLFYLDLGIRGFR
HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEE
CDAAYHVPSELWHFLIPRIKEKYPNAIFLAETLGCSSQQSVDIAEAGFDFITNSFKWWDL
ECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHCHHHHHCCEEEECC
KEQWFLEQNWEYSRHASSVSFPENHDTIRSADQFGGNQYQALLRYELGAYICSSISTTIG
HHHHHHCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
FEYGFQRQIDVVQANPSWWEPICYDISDDIAKINKIKASYDVLQEDNGIEMLQLNDRHVI
CCCCCCEEEEEEECCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEE
GFTKESRNGQEKIMMLANPDGHSSYRVRESNVYGIMGSDKVKDISRSRRMKDVPAFLEYN
EEECCCCCCCEEEEEEECCCCCCCEEEEECCEEEECCCCHHHHHHHHHHHHCCCHHHEEC
LLPGEVKLLYVKL
CCCCCEEEEEEEC
>Mature Secondary Structure 
TKGIRAYNLYPKLVGSMNMWITHFDRIQAMNFDWIYINPINYPGFSGSDYSIKNYYHYH
CCCCEEEECCHHHHCCHHHHHHHHHHHEEECCCEEEEECCCCCCCCCCCCEECCEEEEC
PLYVTGEMDFENPEAHVEKGNKLLKNVCKEAEQRGMKIMMDLVINHTAFDSPLSEEHPDW
CEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHCCCCCCCCCCCCCCH
YERDIDGQLKHPGAQDGENWVEWKDLAQINNAHSSDRDNLWNYWLEMMLFYLDLGIRGFR
HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEE
CDAAYHVPSELWHFLIPRIKEKYPNAIFLAETLGCSSQQSVDIAEAGFDFITNSFKWWDL
ECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHCHHHHHCCEEEECC
KEQWFLEQNWEYSRHASSVSFPENHDTIRSADQFGGNQYQALLRYELGAYICSSISTTIG
HHHHHHCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
FEYGFQRQIDVVQANPSWWEPICYDISDDIAKINKIKASYDVLQEDNGIEMLQLNDRHVI
CCCCCCEEEEEEECCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEE
GFTKESRNGQEKIMMLANPDGHSSYRVRESNVYGIMGSDKVKDISRSRRMKDVPAFLEYN
EEECCCCCCCEEEEEEECCCCCCCEEEEECCEEEECCCCHHHHHHHHHHHHCCCHHHEEC
LLPGEVKLLYVKL
CCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10821190; 12000953 [H]