Definition | Psychromonas ingrahamii 37, complete genome. |
---|---|
Accession | NC_008709 |
Length | 4,559,598 |
Click here to switch to the map view.
The map label for this gene is 119945629
Identifier: 119945629
GI number: 119945629
Start: 2363460
End: 2364506
Strand: Reverse
Name: 119945629
Synonym: Ping_1940
Alternate gene names: NA
Gene position: 2364506-2363460 (Counterclockwise)
Preceding gene: 119945630
Following gene: 119945628
Centisome position: 51.86
GC content: 41.45
Gene sequence:
>1047_bases ATGCGTAGAGAAAACATTAAAGGTTTATTTGAAACTGATTTTCCACTTATTCAGTCACCAATGGCAGGCGTTCAAGATAG TAGATTAACTATTGCTGTCTGTCAGGCTGGTGGGTTAGGTTCATTGCCCTGTGGAATGCTGAGTATTGATAAAGTTGTTA GCGAAATCAAGCTAATTAAAGCGGCAACGGATAAACCCTATAACCTTAATTTCTTCTGCCATAAGATGCCTGACTATGAT CAAAAAAAGCAATCAAAATGGCAAGCTCAATTAAAGCCGTATTTTACAGAATTGGGTGTTGAGTGTGGAAGCCTGCCTAA TAGTGCAACGCGAATACCTTTTAATCATGATGTAGCAGATGCCATTGAGTCATTTCACCCTGAATTTATTAGTTTTCATT TTGGTCTTCCCGATAAGGAATTGCTTGCTCGTGTAAAAAGCTGGGGAACTAAAGTCGTTTCTTCTGCTACAACGATTGAA GAAGCATTGTGGTTAGAGTCTAAAGGCGTTGATGGAATAATTGCTCAAGGTTTCGAAGCTGGTGGGCATCGGGGAATGTT CTTGTCCGATGATGTTTCTACTCAGGTAGGCATGTCAGCTTTAGTCCTTCAAATTGTCAATAAAGTAAGCGTACCCGTCA TCGCAGCGGGTGGTATAGCCGATAGTAAAGGTGTGCAAGCCGCTTTATTGCTTGGCGCTGGCGCGGTGCAAATCGGTACA ACTTATTTGTTGTGTACAGAAGCAACAACATCTCAATTACACCGTTCAGCACTAAAGCATTCCAAATCTCAGCATACGGC TATTACGAATGTTTTTTCAGGTAAACCAGCTCGCGGTATTGTTAACCGGGCGATCAAAGAATTGGGTTATATAAATGTTT TAGCGCCAGATTTTCCTTACGCTTCCATTGAAATGACACAATTACGAGGTTATTTTGAAAAGCTAGGGGCTGATGATTTT TCACCGCTATGGAGCGGACAAAACACTTCTGGCTGTAAAGAGATTTCTGCAAAGAAGTTAACCTTACGGCTTGCTGCTAG GTGCTAA
Upstream 100 bases:
>100_bases CGTGATGAGGTTAGTTTTGAACGTCAAATTACTGCCTTACAAGCCGTTAAATATCGTCATATGACGGTTGCCGGTAAGCA AACTCTTAAGGGAATGATTG
Downstream 100 bases:
>100_bases CAAACTTAGCCTGTTATTAAGGCGTTGAGGCTGTAGAATAACTCGTTTTTTATAAATTTATGAAAATTTATACTTTTTTA ACTTATTGTTTTAAAAGTAA
Product: 2-nitropropane dioxygenase, NPD
Products: NA
Alternate protein names: Nitroalkane oxidase [H]
Number of amino acids: Translated: 348; Mature: 348
Protein sequence:
>348_residues MRRENIKGLFETDFPLIQSPMAGVQDSRLTIAVCQAGGLGSLPCGMLSIDKVVSEIKLIKAATDKPYNLNFFCHKMPDYD QKKQSKWQAQLKPYFTELGVECGSLPNSATRIPFNHDVADAIESFHPEFISFHFGLPDKELLARVKSWGTKVVSSATTIE EALWLESKGVDGIIAQGFEAGGHRGMFLSDDVSTQVGMSALVLQIVNKVSVPVIAAGGIADSKGVQAALLLGAGAVQIGT TYLLCTEATTSQLHRSALKHSKSQHTAITNVFSGKPARGIVNRAIKELGYINVLAPDFPYASIEMTQLRGYFEKLGADDF SPLWSGQNTSGCKEISAKKLTLRLAARC
Sequences:
>Translated_348_residues MRRENIKGLFETDFPLIQSPMAGVQDSRLTIAVCQAGGLGSLPCGMLSIDKVVSEIKLIKAATDKPYNLNFFCHKMPDYD QKKQSKWQAQLKPYFTELGVECGSLPNSATRIPFNHDVADAIESFHPEFISFHFGLPDKELLARVKSWGTKVVSSATTIE EALWLESKGVDGIIAQGFEAGGHRGMFLSDDVSTQVGMSALVLQIVNKVSVPVIAAGGIADSKGVQAALLLGAGAVQIGT TYLLCTEATTSQLHRSALKHSKSQHTAITNVFSGKPARGIVNRAIKELGYINVLAPDFPYASIEMTQLRGYFEKLGADDF SPLWSGQNTSGCKEISAKKLTLRLAARC >Mature_348_residues MRRENIKGLFETDFPLIQSPMAGVQDSRLTIAVCQAGGLGSLPCGMLSIDKVVSEIKLIKAATDKPYNLNFFCHKMPDYD QKKQSKWQAQLKPYFTELGVECGSLPNSATRIPFNHDVADAIESFHPEFISFHFGLPDKELLARVKSWGTKVVSSATTIE EALWLESKGVDGIIAQGFEAGGHRGMFLSDDVSTQVGMSALVLQIVNKVSVPVIAAGGIADSKGVQAALLLGAGAVQIGT TYLLCTEATTSQLHRSALKHSKSQHTAITNVFSGKPARGIVNRAIKELGYINVLAPDFPYASIEMTQLRGYFEKLGADDF SPLWSGQNTSGCKEISAKKLTLRLAARC
Specific function: Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites [H]
COG id: COG2070
COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitronate monooxygenase family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6322609, Length=354, Percent_Identity=30.225988700565, Blast_Score=149, Evalue=8e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004136 - InterPro: IPR013785 [H]
Pfam domain/function: PF03060 NPD [H]
EC number: =1.13.12.16 [H]
Molecular weight: Translated: 37654; Mature: 37654
Theoretical pI: Translated: 8.28; Mature: 8.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRENIKGLFETDFPLIQSPMAGVQDSRLTIAVCQAGGLGSLPCGMLSIDKVVSEIKLIK CCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH AATDKPYNLNFFCHKMPDYDQKKQSKWQAQLKPYFTELGVECGSLPNSATRIPFNHDVAD HCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCHHH AIESFHPEFISFHFGLPDKELLARVKSWGTKVVSSATTIEEALWLESKGVDGIIAQGFEA HHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCC GGHRGMFLSDDVSTQVGMSALVLQIVNKVSVPVIAAGGIADSKGVQAALLLGAGAVQIGT CCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCCHHHHCC TYLLCTEATTSQLHRSALKHSKSQHTAITNVFSGKPARGIVNRAIKELGYINVLAPDFPY EEEEEECHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCC ASIEMTQLRGYFEKLGADDFSPLWSGQNTSGCKEISAKKLTLRLAARC CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHEEEEECCC >Mature Secondary Structure MRRENIKGLFETDFPLIQSPMAGVQDSRLTIAVCQAGGLGSLPCGMLSIDKVVSEIKLIK CCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH AATDKPYNLNFFCHKMPDYDQKKQSKWQAQLKPYFTELGVECGSLPNSATRIPFNHDVAD HCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCHHH AIESFHPEFISFHFGLPDKELLARVKSWGTKVVSSATTIEEALWLESKGVDGIIAQGFEA HHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCC GGHRGMFLSDDVSTQVGMSALVLQIVNKVSVPVIAAGGIADSKGVQAALLLGAGAVQIGT CCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCCHHHHCC TYLLCTEATTSQLHRSALKHSKSQHTAITNVFSGKPARGIVNRAIKELGYINVLAPDFPY EEEEEECHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCC ASIEMTQLRGYFEKLGADDFSPLWSGQNTSGCKEISAKKLTLRLAARC CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA