Definition | Psychromonas ingrahamii 37, complete genome. |
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Accession | NC_008709 |
Length | 4,559,598 |
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The map label for this gene is 119945628
Identifier: 119945628
GI number: 119945628
Start: 2362732
End: 2363304
Strand: Reverse
Name: 119945628
Synonym: Ping_1939
Alternate gene names: NA
Gene position: 2363304-2362732 (Counterclockwise)
Preceding gene: 119945629
Following gene: 119945627
Centisome position: 51.83
GC content: 38.74
Gene sequence:
>573_bases TTGGGCAATGAAATGAAAATAAACACCTTTATTCTATTCTTATCTCTCGTTCTTACATTAAGTGGTTGCGTACCTAATGC TGTTACATACTACAGGCCCGCAGCTGAGGGAGGCTACGTTCATGCCAAAGGGTTTGTGCCAACAGTATCCTTACTCGACA TCGTTATCGGGAGTCCCCATCAGAGTGTCCATATAAGAGCCTGGGCAAATGATGGAGAACATAAAAATATCGTTTATATC GGTTTTTCAGGATGCGCATGGAATAATATAAATTTTACGTCGACAGATTTTAAAGTGATTGATCTTGATAACAATATCGC GATAAATGTGTTGTCTGTTTTTGCCAATAAACATGACAGCTTTAAAAAGTTAAACACAATTCCCTATGCCGCACCACATA AGACGTTACCAGGAATGACAAGGTTTTCAATCGACATTCAATTACCGAATCCAATGCCTAAGAAGTTTGAGTTATTGAGT CCATTACTTATCATTGATGGTGAAAAAATAACGCTGCCAACAATTAGGTTTGAGCAACAGGTCTGGGTTGGCATAAGCCC ACTTAATTGTTGA
Upstream 100 bases:
>100_bases ATTTATGAAAATTTATACTTTTTTAACTTATTGTTTTAAAAGTAAATTAAATTTTGAGAAAGTGTTTTTTTTCTGAAAAT GGAGAAATTCTACAGCCTCG
Downstream 100 bases:
>100_bases AAAGGCTTAATAAGTTGCTACCCTCACACTTGGTACAGTGGTTGCGGTTTTTGCTAAAAACAAACAGTACCAACTTACCG GCTGGTGGGCAGGCTTTAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 190; Mature: 189
Protein sequence:
>190_residues MGNEMKINTFILFLSLVLTLSGCVPNAVTYYRPAAEGGYVHAKGFVPTVSLLDIVIGSPHQSVHIRAWANDGEHKNIVYI GFSGCAWNNINFTSTDFKVIDLDNNIAINVLSVFANKHDSFKKLNTIPYAAPHKTLPGMTRFSIDIQLPNPMPKKFELLS PLLIIDGEKITLPTIRFEQQVWVGISPLNC
Sequences:
>Translated_190_residues MGNEMKINTFILFLSLVLTLSGCVPNAVTYYRPAAEGGYVHAKGFVPTVSLLDIVIGSPHQSVHIRAWANDGEHKNIVYI GFSGCAWNNINFTSTDFKVIDLDNNIAINVLSVFANKHDSFKKLNTIPYAAPHKTLPGMTRFSIDIQLPNPMPKKFELLS PLLIIDGEKITLPTIRFEQQVWVGISPLNC >Mature_189_residues GNEMKINTFILFLSLVLTLSGCVPNAVTYYRPAAEGGYVHAKGFVPTVSLLDIVIGSPHQSVHIRAWANDGEHKNIVYIG FSGCAWNNINFTSTDFKVIDLDNNIAINVLSVFANKHDSFKKLNTIPYAAPHKTLPGMTRFSIDIQLPNPMPKKFELLSP LLIIDGEKITLPTIRFEQQVWVGISPLNC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21084; Mature: 20953
Theoretical pI: Translated: 8.09; Mature: 8.09
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGNEMKINTFILFLSLVLTLSGCVPNAVTYYRPAAEGGYVHAKGFVPTVSLLDIVIGSPH CCCCEEHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCCCCHHHEEHHHCCCCC QSVHIRAWANDGEHKNIVYIGFSGCAWNNINFTSTDFKVIDLDNNIAINVLSVFANKHDS CEEEEEEECCCCCCCEEEEEEECCEEECCCCCCCCCEEEEECCCCEEEEEEEEECCCCCC FKKLNTIPYAAPHKTLPGMTRFSIDIQLPNPMPKKFELLSPLLIIDGEKITLPTIRFEQQ HHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCEEEECCCEEEECEEEECCE VWVGISPLNC EEEEEECCCC >Mature Secondary Structure GNEMKINTFILFLSLVLTLSGCVPNAVTYYRPAAEGGYVHAKGFVPTVSLLDIVIGSPH CCCEEHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCCCCHHHEEHHHCCCCC QSVHIRAWANDGEHKNIVYIGFSGCAWNNINFTSTDFKVIDLDNNIAINVLSVFANKHDS CEEEEEEECCCCCCCEEEEEEECCEEECCCCCCCCCEEEEECCCCEEEEEEEEECCCCCC FKKLNTIPYAAPHKTLPGMTRFSIDIQLPNPMPKKFELLSPLLIIDGEKITLPTIRFEQQ HHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCEEEECCCEEEECEEEECCE VWVGISPLNC EEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA