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The map label for this gene is rraA [C]

Identifier: 119945619

GI number: 119945619

Start: 2354718

End: 2355335

Strand: Reverse

Name: rraA [C]

Synonym: Ping_1928

Alternate gene names: 119945619

Gene position: 2355335-2354718 (Counterclockwise)

Preceding gene: 119945620

Following gene: 119945615

Centisome position: 51.66

GC content: 42.88

Gene sequence:

>618_bases
ATGGAACAGGACTTTTCAACACTAGCAACAACGGACTACGGAAATGTATTAGGTCGGGATCAATTTATTGATATATCGAT
ACATCCTCTTTTTCAGGATATGAAACCGATATCAGGACCGGCTTATACGGTTCAATTGTCCTCTGGCGATCACCTAATGC
TTCACAGTGCAATATATGAAGCGCCTGAAGGCTCAATCGTGGTTGTTGACGGTGTAGACAGTAAAAATGCTGTTGCTGGT
GGTAATGTCTGTGCGATCGCTAAAAAGCGCGGTATTAAAGGCTTTGTTATTGACGGTGTAATTCGTGATTTAGGTGAAAT
AACCGCAATGGGCTTCCCTGTTTATGCGAAAGGTGTATTTCCTGTTCCAGGCAAGAAGCAGCAGTATTTCGAATTAGATA
AACCTATTACTTGTGGCGGGGTAAAAGTTTGCCCCGGAGATATAATAGTGGCAGATATCGAAGGTATCGTTGTTATTCCA
AAATATAAAGCGCTGGCAACATACCAGGCAGCGAAAGCAAAAGTGAAGTTAGAAAGTCGTATGACGCTGGGTGACTGGGA
AGCTAGCCACAGGTTGAAAGTACAACAAGCAATCGAAGCGGCTAAAAAAGCCGAATAA

Upstream 100 bases:

>100_bases
AGTGCGGTCATTTTGAGAGCTTGATTAGAATGTGCTCGCTGTTAATTTCTATCAATCAAAACCGCAAAAATCAGGTAATC
AATCTAATTAAGGGATCAAA

Downstream 100 bases:

>100_bases
ACGTCCTAGAAAAGTTGTAGAATAACCGGTTATTTTTATAAATTTATAAAAATAAAGAAATTCTACAACCTGATTATGCT
TGTGTGCTTTGTGCTTCTAT

Product: dimethylmenaquinone methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MEQDFSTLATTDYGNVLGRDQFIDISIHPLFQDMKPISGPAYTVQLSSGDHLMLHSAIYEAPEGSIVVVDGVDSKNAVAG
GNVCAIAKKRGIKGFVIDGVIRDLGEITAMGFPVYAKGVFPVPGKKQQYFELDKPITCGGVKVCPGDIIVADIEGIVVIP
KYKALATYQAAKAKVKLESRMTLGDWEASHRLKVQQAIEAAKKAE

Sequences:

>Translated_205_residues
MEQDFSTLATTDYGNVLGRDQFIDISIHPLFQDMKPISGPAYTVQLSSGDHLMLHSAIYEAPEGSIVVVDGVDSKNAVAG
GNVCAIAKKRGIKGFVIDGVIRDLGEITAMGFPVYAKGVFPVPGKKQQYFELDKPITCGGVKVCPGDIIVADIEGIVVIP
KYKALATYQAAKAKVKLESRMTLGDWEASHRLKVQQAIEAAKKAE
>Mature_205_residues
MEQDFSTLATTDYGNVLGRDQFIDISIHPLFQDMKPISGPAYTVQLSSGDHLMLHSAIYEAPEGSIVVVDGVDSKNAVAG
GNVCAIAKKRGIKGFVIDGVIRDLGEITAMGFPVYAKGVFPVPGKKQQYFELDKPITCGGVKVCPGDIIVADIEGIVVIP
KYKALATYQAAKAKVKLESRMTLGDWEASHRLKVQQAIEAAKKAE

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 22039; Mature: 22039

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQDFSTLATTDYGNVLGRDQFIDISIHPLFQDMKPISGPAYTVQLSSGDHLMLHSAIYE
CCCCCCCEEECCCCCCCCCCEEEEEEECHHHHCCCCCCCCEEEEEECCCCEEEEEEHHHC
APEGSIVVVDGVDSKNAVAGGNVCAIAKKRGIKGFVIDGVIRDLGEITAMGFPVYAKGVF
CCCCCEEEEECCCCCCCCCCCCEEEEEHHCCCCEEEHHHHHHHHHHHHHCCCCEEECCEE
PVPGKKQQYFELDKPITCGGVKVCPGDIIVADIEGIVVIPKYKALATYQAAKAKVKLESR
CCCCCCCCEEECCCCEECCCEEECCCCEEEEECCCEEEEECCHHHHHHHHHHEEEEEECC
MTLGDWEASHRLKVQQAIEAAKKAE
CEECCCCCCCEEHHHHHHHHHHCCC
>Mature Secondary Structure
MEQDFSTLATTDYGNVLGRDQFIDISIHPLFQDMKPISGPAYTVQLSSGDHLMLHSAIYE
CCCCCCCEEECCCCCCCCCCEEEEEEECHHHHCCCCCCCCEEEEEECCCCEEEEEEHHHC
APEGSIVVVDGVDSKNAVAGGNVCAIAKKRGIKGFVIDGVIRDLGEITAMGFPVYAKGVF
CCCCCEEEEECCCCCCCCCCCCEEEEEHHCCCCEEEHHHHHHHHHHHHHCCCCEEECCEE
PVPGKKQQYFELDKPITCGGVKVCPGDIIVADIEGIVVIPKYKALATYQAAKAKVKLESR
CCCCCCCCEEECCCCEECCCEEECCCCEEEEECCCEEEEECCHHHHHHHHHHEEEEEECC
MTLGDWEASHRLKVQQAIEAAKKAE
CEECCCCCCCEEHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]