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The map label for this gene is ytfM [H]

Identifier: 119945606

GI number: 119945606

Start: 2340718

End: 2342445

Strand: Reverse

Name: ytfM [H]

Synonym: Ping_1915

Alternate gene names: 119945606

Gene position: 2342445-2340718 (Counterclockwise)

Preceding gene: 119945607

Following gene: 119945605

Centisome position: 51.37

GC content: 39.41

Gene sequence:

>1728_bases
ATGAAAATTTCTAAAACTTTATTTTTCCTGTTAGCGCTGCTTGTGCATAGTAGTCTCTATGCAGATGTTATATTTTCAAT
AAAAGGAATCGATAATAAGGATGTAAAAGAAAACATCGTTGTTTTTTTGAAAGGATTGTCACAACCTCAGAATGCTAATA
GCCAAAGTTATTTACAACAAGTACAAAGTTCAACCCGGCAAGCAGTGACTGCTTTAGGCTATTATCAAATGAAGCTGGAC
ATTAATGTTACAGGCGAAGCAGGAAAACAGACCGTCACACTGCTCGTTAACCTTGGAATGGCCACCCGTATTACTGCGTT
AAATTTAAAACTGCTCGGTGAGGGAAGCTCAGATCCCGACTTCTTAAAAATAGTTAAAAATTTTCCGCTTAAAAAAAATG
ATATTCTCCACCATGGCAAATATGAGCAAGGGAAAAACCAACTTAAAAATATGGCTCAACAACATGGTTATTTTGATGCG
AAATTTTCCCAGGCATCCGTTGATGTTATTTCCAAAAATAACAGTGCCACTGTTAACATTCGGTTTGATACCGGTATTCG
CTACCAGTTTGGTGAATTGTTTTTTTCTCCAGAAGATTTACCCGCCAAAAAACTTATCTCTTCATTACAAAACTTTAAAG
CTGGCGATCCCTACGATTCTCAAACCTTAATGAAATTTAATACGGAAACAAATAGAACGGGTTATTTTAAAAACATCTCC
ATTGTACCCGAAATTAAAAAAAAGCAGGGACGCGAGATTCCACTTTTAGTGCTTGCCAAAATGCGCCCTAAAGACTCCTT
TAATGCAGGTATTGGGGTTAGTACAGATGAAGGTATTCGGGGTAAGTTCCGCTGGACAAGACCCTGGGTAAATCAATATG
GCCATAGCATAGTGGGTAATGTTGTCGCCTCCGTACCTCGGCAAGAAGCCTCCTTAGCCTATAACATTCCTATTAGTGAT
CCTCTTTACCATTATTACTCGATTAAAACAGGCTATAAATTTGTTGATGACAATGATACCAATACCCAACAATATTTATT
TAGTGTCGGTCGCTATAAACGTTTAGAAAATAATTGGTTACGCAATGTATTTGTTAAATATCATAATGAGACCGGAGAGC
AGGGGCAGGACGATTTTTCTGCTGAATTAATTATGCCGGGAGTCAGTTTTAGCCGCATCAGATTACGTGGTGGTCTTCAT
CCAACTTGGGGAGATACCCAGCAATACGAAATCGCTGTGGCCCATAAAAGTTTATTTTCAAGTTCTAATTTATTTAAAAT
TTATGGAAAAGCAAAATTTTTGCGTAGCTATAATAAGCAGCAATTTTTCAGCACCACGGAAGTGGGCGCGCTTTATACTG
ATTCTATCTATAACGTGCCAGCTTCCATGCGGTTTTTTGCCGGGGGTGATCAAAGTATTCGCGGTTACAGTTACGAGAGT
ATCTCCCCAGAAGATAATGATGGATATTTAATCGGAGGAAAATATCTCGCCGTGCAAAGTTTAGAATATCGTTTCCCAGT
GGCCAATAATTGGAAGGTGGCGACCTTTATTGATGCCGGAACTGCTACCTCTACCTTCAGTGAGCCGATTTCCGTTGGTG
CTGGTCTTGGTATTATTTGGTCATCTCCGATCGGCCCAGTTAGATTTTATGCGGCAGCGCCCGTGAACAATGCCGATACA
ACGCTTAATAAATGGATGCTGCACTTTATGATTGGACCTGAATTATGA

Upstream 100 bases:

>100_bases
AATATTGCAAACCTATTAAGACTGTAGAGTATGCACTTTTTTCTGTCTTTTTTATCAAAAATACCCTTCGGTATGCATTG
GAAGAAATATTATTAATTGT

Downstream 100 bases:

>100_bases
GTATGAAGTTAAAAATAGAGCTGATATGTAGAAAAACTTTTTTAACTTTATTGTTATTAATTATATTTACTGTCGCCAGT
GTAACGTCAATTTTATTGAC

Product: surface antigen (D15)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 575; Mature: 575

Protein sequence:

>575_residues
MKISKTLFFLLALLVHSSLYADVIFSIKGIDNKDVKENIVVFLKGLSQPQNANSQSYLQQVQSSTRQAVTALGYYQMKLD
INVTGEAGKQTVTLLVNLGMATRITALNLKLLGEGSSDPDFLKIVKNFPLKKNDILHHGKYEQGKNQLKNMAQQHGYFDA
KFSQASVDVISKNNSATVNIRFDTGIRYQFGELFFSPEDLPAKKLISSLQNFKAGDPYDSQTLMKFNTETNRTGYFKNIS
IVPEIKKKQGREIPLLVLAKMRPKDSFNAGIGVSTDEGIRGKFRWTRPWVNQYGHSIVGNVVASVPRQEASLAYNIPISD
PLYHYYSIKTGYKFVDDNDTNTQQYLFSVGRYKRLENNWLRNVFVKYHNETGEQGQDDFSAELIMPGVSFSRIRLRGGLH
PTWGDTQQYEIAVAHKSLFSSSNLFKIYGKAKFLRSYNKQQFFSTTEVGALYTDSIYNVPASMRFFAGGDQSIRGYSYES
ISPEDNDGYLIGGKYLAVQSLEYRFPVANNWKVATFIDAGTATSTFSEPISVGAGLGIIWSSPIGPVRFYAAAPVNNADT
TLNKWMLHFMIGPEL

Sequences:

>Translated_575_residues
MKISKTLFFLLALLVHSSLYADVIFSIKGIDNKDVKENIVVFLKGLSQPQNANSQSYLQQVQSSTRQAVTALGYYQMKLD
INVTGEAGKQTVTLLVNLGMATRITALNLKLLGEGSSDPDFLKIVKNFPLKKNDILHHGKYEQGKNQLKNMAQQHGYFDA
KFSQASVDVISKNNSATVNIRFDTGIRYQFGELFFSPEDLPAKKLISSLQNFKAGDPYDSQTLMKFNTETNRTGYFKNIS
IVPEIKKKQGREIPLLVLAKMRPKDSFNAGIGVSTDEGIRGKFRWTRPWVNQYGHSIVGNVVASVPRQEASLAYNIPISD
PLYHYYSIKTGYKFVDDNDTNTQQYLFSVGRYKRLENNWLRNVFVKYHNETGEQGQDDFSAELIMPGVSFSRIRLRGGLH
PTWGDTQQYEIAVAHKSLFSSSNLFKIYGKAKFLRSYNKQQFFSTTEVGALYTDSIYNVPASMRFFAGGDQSIRGYSYES
ISPEDNDGYLIGGKYLAVQSLEYRFPVANNWKVATFIDAGTATSTFSEPISVGAGLGIIWSSPIGPVRFYAAAPVNNADT
TLNKWMLHFMIGPEL
>Mature_575_residues
MKISKTLFFLLALLVHSSLYADVIFSIKGIDNKDVKENIVVFLKGLSQPQNANSQSYLQQVQSSTRQAVTALGYYQMKLD
INVTGEAGKQTVTLLVNLGMATRITALNLKLLGEGSSDPDFLKIVKNFPLKKNDILHHGKYEQGKNQLKNMAQQHGYFDA
KFSQASVDVISKNNSATVNIRFDTGIRYQFGELFFSPEDLPAKKLISSLQNFKAGDPYDSQTLMKFNTETNRTGYFKNIS
IVPEIKKKQGREIPLLVLAKMRPKDSFNAGIGVSTDEGIRGKFRWTRPWVNQYGHSIVGNVVASVPRQEASLAYNIPISD
PLYHYYSIKTGYKFVDDNDTNTQQYLFSVGRYKRLENNWLRNVFVKYHNETGEQGQDDFSAELIMPGVSFSRIRLRGGLH
PTWGDTQQYEIAVAHKSLFSSSNLFKIYGKAKFLRSYNKQQFFSTTEVGALYTDSIYNVPASMRFFAGGDQSIRGYSYES
ISPEDNDGYLIGGKYLAVQSLEYRFPVANNWKVATFIDAGTATSTFSEPISVGAGLGIIWSSPIGPVRFYAAAPVNNADT
TLNKWMLHFMIGPEL

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=579, Percent_Identity=31.433506044905, Blast_Score=320, Evalue=1e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 64566; Mature: 64566

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISKTLFFLLALLVHSSLYADVIFSIKGIDNKDVKENIVVFLKGLSQPQNANSQSYLQQ
CCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHEEECCCCCCCCCHHHHHHH
VQSSTRQAVTALGYYQMKLDINVTGEAGKQTVTLLVNLGMATRITALNLKLLGEGSSDPD
HHHHHHHHHHHEEEEEEEEEEEECCCCCCEEEEEEEECCCHHEEEEEEEEEEECCCCCHH
FLKIVKNFPLKKNDILHHGKYEQGKNQLKNMAQQHGYFDAKFSQASVDVISKNNSATVNI
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCEEEEEECCCCEEEEE
RFDTGIRYQFGELFFSPEDLPAKKLISSLQNFKAGDPYDSQTLMKFNTETNRTGYFKNIS
EECCCCEEEEHHEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEE
IVPEIKKKQGREIPLLVLAKMRPKDSFNAGIGVSTDEGIRGKFRWTRPWVNQYGHSIVGN
ECCCHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHH
VVASVPRQEASLAYNIPISDPLYHYYSIKTGYKFVDDNDTNTQQYLFSVGRYKRLENNWL
HHHHCCCCCCCEEEECCCCCCCEEEEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHH
RNVFVKYHNETGEQGQDDFSAELIMPGVSFSRIRLRGGLHPTWGDTQQYEIAVAHKSLFS
HHHHHEECCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEEHHHHCC
SSNLFKIYGKAKFLRSYNKQQFFSTTEVGALYTDSIYNVPASMRFFAGGDQSIRGYSYES
CCCEEEEEHHHHHHHHCCHHHHCCHHCCCEEEECHHHCCCCCEEEEECCCCCCCCCCCCC
ISPEDNDGYLIGGKYLAVQSLEYRFPVANNWKVATFIDAGTATSTFSEPISVGAGLGIIW
CCCCCCCCEEECCEEEEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCHHCCCCCEEEE
SSPIGPVRFYAAAPVNNADTTLNKWMLHFMIGPEL
CCCCCCEEEEEECCCCCCCHHHHHHHEEEEECCCC
>Mature Secondary Structure
MKISKTLFFLLALLVHSSLYADVIFSIKGIDNKDVKENIVVFLKGLSQPQNANSQSYLQQ
CCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHEEECCCCCCCCCHHHHHHH
VQSSTRQAVTALGYYQMKLDINVTGEAGKQTVTLLVNLGMATRITALNLKLLGEGSSDPD
HHHHHHHHHHHEEEEEEEEEEEECCCCCCEEEEEEEECCCHHEEEEEEEEEEECCCCCHH
FLKIVKNFPLKKNDILHHGKYEQGKNQLKNMAQQHGYFDAKFSQASVDVISKNNSATVNI
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCEEEEEECCCCEEEEE
RFDTGIRYQFGELFFSPEDLPAKKLISSLQNFKAGDPYDSQTLMKFNTETNRTGYFKNIS
EECCCCEEEEHHEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEE
IVPEIKKKQGREIPLLVLAKMRPKDSFNAGIGVSTDEGIRGKFRWTRPWVNQYGHSIVGN
ECCCHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHH
VVASVPRQEASLAYNIPISDPLYHYYSIKTGYKFVDDNDTNTQQYLFSVGRYKRLENNWL
HHHHCCCCCCCEEEECCCCCCCEEEEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHH
RNVFVKYHNETGEQGQDDFSAELIMPGVSFSRIRLRGGLHPTWGDTQQYEIAVAHKSLFS
HHHHHEECCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEEHHHHCC
SSNLFKIYGKAKFLRSYNKQQFFSTTEVGALYTDSIYNVPASMRFFAGGDQSIRGYSYES
CCCEEEEEHHHHHHHHCCHHHHCCHHCCCEEEECHHHCCCCCEEEEECCCCCCCCCCCCC
ISPEDNDGYLIGGKYLAVQSLEYRFPVANNWKVATFIDAGTATSTFSEPISVGAGLGIIW
CCCCCCCCEEECCEEEEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCHHCCCCCEEEE
SSPIGPVRFYAAAPVNNADTTLNKWMLHFMIGPEL
CCCCCCEEEEEECCCCCCCHHHHHHHEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]