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The map label for this gene is ydhC [H]

Identifier: 119945565

GI number: 119945565

Start: 2274249

End: 2274962

Strand: Reverse

Name: ydhC [H]

Synonym: Ping_1870

Alternate gene names: 119945565

Gene position: 2274962-2274249 (Counterclockwise)

Preceding gene: 119945566

Following gene: 119945564

Centisome position: 49.89

GC content: 42.02

Gene sequence:

>714_bases
TTGACTTCTACCTCACAAATTGTAGACAACGCGATGAATCAGAGCATAGAAATAAAAGAACAAACAAAATCAGAAAACTT
AACTGAACAGCTGATTGAAGCTATCGTAAGTGGTGAATATAGCCCTGGAAGCAAAATATCAGAAACGGAACTTGCCCGTT
TTTTTAATGTCAGTCGCGGTCCGCTTCGTGAAGCAATGATGCGTATTGAGGCGCTTAATTTAGTTGAACGAATTCCCCAT
GTAGGTACCCGGGTTGCCACCTTAAGCCAGGAAAAATTAATTGAAATTTATGCGGTAAGAGAAGCGCTGGAAGGAATGGC
TGCCAACCTTGCCTGCAAACATATTACCGAGCAGGAAATTGCAGGTTTAGAAATGTTATTAGAGCAGCATCAAGAGCATA
TTGAACAGGTGGACGGGGCTTCCTATTTTCATCAACACGGTGATTTTGATTTTCATTACCAAATTATTAAAGCCAGCCGC
AATAGCAAACTGATCACTTTATTATGTAATGAGTTATATCACCTGCTGCGCATGTACCGTTACCAGTCACCCAGTACGCA
GTCACGCCCGACACTCGCCCTTAACGAACATTTTCATATACTCACCGCAATCAAAGAACGCGATGCTGAACTTGCCGAAA
TGTTAATGCGCCGGCATATCAAACGCAGCCGGGAATTAATCGAAAACCAACTGATAGAAGAAGGAAAAAACTAA

Upstream 100 bases:

>100_bases
TGTAAAATTTGTGATCTTGGTGGGAAATTTAAGATTGAAACAATCAAAAAATCCTGATTGTCGACAATGATGTTGATTTA
AGGCTAAAAAAAAGGGATTA

Downstream 100 bases:

>100_bases
TGACGCCAGGTAAAAAATTCAGACAAGCACTTATCAATAATAAACCGCTGCTGAAATGTTAATGCGCTGGCATGTCAAAC
GCAGCCCGGAATTAATCGAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MTSTSQIVDNAMNQSIEIKEQTKSENLTEQLIEAIVSGEYSPGSKISETELARFFNVSRGPLREAMMRIEALNLVERIPH
VGTRVATLSQEKLIEIYAVREALEGMAANLACKHITEQEIAGLEMLLEQHQEHIEQVDGASYFHQHGDFDFHYQIIKASR
NSKLITLLCNELYHLLRMYRYQSPSTQSRPTLALNEHFHILTAIKERDAELAEMLMRRHIKRSRELIENQLIEEGKN

Sequences:

>Translated_237_residues
MTSTSQIVDNAMNQSIEIKEQTKSENLTEQLIEAIVSGEYSPGSKISETELARFFNVSRGPLREAMMRIEALNLVERIPH
VGTRVATLSQEKLIEIYAVREALEGMAANLACKHITEQEIAGLEMLLEQHQEHIEQVDGASYFHQHGDFDFHYQIIKASR
NSKLITLLCNELYHLLRMYRYQSPSTQSRPTLALNEHFHILTAIKERDAELAEMLMRRHIKRSRELIENQLIEEGKN
>Mature_236_residues
TSTSQIVDNAMNQSIEIKEQTKSENLTEQLIEAIVSGEYSPGSKISETELARFFNVSRGPLREAMMRIEALNLVERIPHV
GTRVATLSQEKLIEIYAVREALEGMAANLACKHITEQEIAGLEMLLEQHQEHIEQVDGASYFHQHGDFDFHYQIIKASRN
SKLITLLCNELYHLLRMYRYQSPSTQSRPTLALNEHFHILTAIKERDAELAEMLMRRHIKRSRELIENQLIEEGKN

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=187, Percent_Identity=28.8770053475936, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27302; Mature: 27170

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSTSQIVDNAMNQSIEIKEQTKSENLTEQLIEAIVSGEYSPGSKISETELARFFNVSRG
CCCHHHHHHHHHCCCEEHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC
PLREAMMRIEALNLVERIPHVGTRVATLSQEKLIEIYAVREALEGMAANLACKHITEQEI
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLEMLLEQHQEHIEQVDGASYFHQHGDFDFHYQIIKASRNSKLITLLCNELYHLLRMYR
HHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHH
YQSPSTQSRPTLALNEHFHILTAIKERDAELAEMLMRRHIKRSRELIENQLIEEGKN
CCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TSTSQIVDNAMNQSIEIKEQTKSENLTEQLIEAIVSGEYSPGSKISETELARFFNVSRG
CCHHHHHHHHHCCCEEHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC
PLREAMMRIEALNLVERIPHVGTRVATLSQEKLIEIYAVREALEGMAANLACKHITEQEI
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLEMLLEQHQEHIEQVDGASYFHQHGDFDFHYQIIKASRNSKLITLLCNELYHLLRMYR
HHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHH
YQSPSTQSRPTLALNEHFHILTAIKERDAELAEMLMRRHIKRSRELIENQLIEEGKN
CCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]