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The map label for this gene is cydA [H]

Identifier: 119945486

GI number: 119945486

Start: 2172167

End: 2173612

Strand: Reverse

Name: cydA [H]

Synonym: Ping_1787

Alternate gene names: 119945486

Gene position: 2173612-2172167 (Counterclockwise)

Preceding gene: 119945487

Following gene: 119945485

Centisome position: 47.67

GC content: 44.74

Gene sequence:

>1446_bases
ATGAGAGCTATAGTTATGTTGGAAAGCTTCACTGCGGAGACGCTTGCTAGAATGCAGTTTGCATTCACCGTCTCCTTTCA
TATTATATTCCCAGCCTTTTCGATCGGAGTAGCCAGTTATTTAGCCGTATTGAATGGCTTGTGGCTAAAAACACATGATC
AAACCTACCTTTTTTTGTTTAACTACTGGAAGAAAATTTTCGCGGTTGCCTTTGGAATGGGCGTAGTTTCCGGTATTGTG
ATGTCGTATCAATTTGGTACTAACTGGTCGGTTTTTGCAGACAAAACTGGACCAATACTCGGGCCACTTATGGCCTATGA
AATACTCTCTGCCTTCTTCTTAGAGGCCGGATTTTTAGGCATCGCTTTATTTGGACGTGAGCGTGTGGGTAATAGACTAC
ACATGTTCGCAGTTTGTATGGTCGCCTTTGGTACTTTAATGTCAGCCACTTGGATTTTATCAGTCAACTCGTGGATGCAA
ACGCCTGCTGGCTATAGCATTAATGACGTAGGGCAATTTATTCCAGAAGACTGGTGGCAGATTGTCTTCAACCCTTCGTT
TCCATACCGTTTAGTACACATGGTATTGGCAGCCTATCTCACAACCGCGCTAGTCGTTGGTGCTGTCGGTGCATTACACC
TGCTAAGAAACAAGGCTGATGCGGCTGCACGTCGTATGTTTTCAATGGCGATGTGGATGTTAATTGTTGTCGCCCCCTTA
CAAATTGTTGTAGGAGACTTTCACGGTTTAAACACTTTAGAGTATCAACCAGCCAAAGTAATGGCGATGGAAGGACACTA
TGACAGCCATCCAGAGGGTGCACCGCTGATCTTATTTGGCATCCCTAACCCAGAAGAAAAAAGGATTGATTACGCGATTC
AGATACCCAAACTCTCTAGCTTGATCTTAAAGCATGACTTAAACGCCCCGCTTGCAGGTTTAGATACTATTCCTGATGAA
GACGAACCACCTGTTGCGGTGATATTCTGGAGCTTCCGTATTATGATTTCGCTAGGCTTTGCCATGTTAGGACTGGGCGT
ATGGAGCTTATGGCGACGCATTCGCGGCAAGCTTTATAATGACGATTTGTTAAAGCGGGCCGCAATTGTTATGGGACCCA
TGGGATTTGTTGCCGTACTGGCAGGTTGGGTTACTACTGAAGTAGGCCGTCAACCTTTCACTGTTTACGGACTATTGCGT
ACAACCGACAGTCTTGCACCAATTGATGCGCCTGCGGTTGCGGTATCGCTAATCTCATTTATCATCGTTTATTTCTTTGT
CTTTGGTGCAGGTACTTACTATATATTAAGACTGATGAATAAACCGACAGCTACGTCAGGTCTTGAGATAAATAAGGGCC
CTATCCGGACCGCACAAAATCAATTTATTGCAACAACTGACGCAAACCTTAAGTCAGGTGCGCAAGGAGACAATCGTGGA
ATTTGA

Upstream 100 bases:

>100_bases
AACCTTATTTTCATCTAAGAGTTATATTTCTAATGTTACTTTTGTTTCAATATTTATTTTATTGCCACATAAGTTTAACA
TAATTTTAAATCAAATTTAT

Downstream 100 bases:

>100_bases
ATTATCGTTTATCTTGGCGATGATTATCGCCTTCGCCGTACTCAGCTATGTCATTTTAGATGGCTTTGATCTGGGCATCG
GTATTTTGTTTCCATCAGCT

Product: cytochrome bd ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 481; Mature: 481

Protein sequence:

>481_residues
MRAIVMLESFTAETLARMQFAFTVSFHIIFPAFSIGVASYLAVLNGLWLKTHDQTYLFLFNYWKKIFAVAFGMGVVSGIV
MSYQFGTNWSVFADKTGPILGPLMAYEILSAFFLEAGFLGIALFGRERVGNRLHMFAVCMVAFGTLMSATWILSVNSWMQ
TPAGYSINDVGQFIPEDWWQIVFNPSFPYRLVHMVLAAYLTTALVVGAVGALHLLRNKADAAARRMFSMAMWMLIVVAPL
QIVVGDFHGLNTLEYQPAKVMAMEGHYDSHPEGAPLILFGIPNPEEKRIDYAIQIPKLSSLILKHDLNAPLAGLDTIPDE
DEPPVAVIFWSFRIMISLGFAMLGLGVWSLWRRIRGKLYNDDLLKRAAIVMGPMGFVAVLAGWVTTEVGRQPFTVYGLLR
TTDSLAPIDAPAVAVSLISFIIVYFFVFGAGTYYILRLMNKPTATSGLEINKGPIRTAQNQFIATTDANLKSGAQGDNRG
I

Sequences:

>Translated_481_residues
MRAIVMLESFTAETLARMQFAFTVSFHIIFPAFSIGVASYLAVLNGLWLKTHDQTYLFLFNYWKKIFAVAFGMGVVSGIV
MSYQFGTNWSVFADKTGPILGPLMAYEILSAFFLEAGFLGIALFGRERVGNRLHMFAVCMVAFGTLMSATWILSVNSWMQ
TPAGYSINDVGQFIPEDWWQIVFNPSFPYRLVHMVLAAYLTTALVVGAVGALHLLRNKADAAARRMFSMAMWMLIVVAPL
QIVVGDFHGLNTLEYQPAKVMAMEGHYDSHPEGAPLILFGIPNPEEKRIDYAIQIPKLSSLILKHDLNAPLAGLDTIPDE
DEPPVAVIFWSFRIMISLGFAMLGLGVWSLWRRIRGKLYNDDLLKRAAIVMGPMGFVAVLAGWVTTEVGRQPFTVYGLLR
TTDSLAPIDAPAVAVSLISFIIVYFFVFGAGTYYILRLMNKPTATSGLEINKGPIRTAQNQFIATTDANLKSGAQGDNRG
I
>Mature_481_residues
MRAIVMLESFTAETLARMQFAFTVSFHIIFPAFSIGVASYLAVLNGLWLKTHDQTYLFLFNYWKKIFAVAFGMGVVSGIV
MSYQFGTNWSVFADKTGPILGPLMAYEILSAFFLEAGFLGIALFGRERVGNRLHMFAVCMVAFGTLMSATWILSVNSWMQ
TPAGYSINDVGQFIPEDWWQIVFNPSFPYRLVHMVLAAYLTTALVVGAVGALHLLRNKADAAARRMFSMAMWMLIVVAPL
QIVVGDFHGLNTLEYQPAKVMAMEGHYDSHPEGAPLILFGIPNPEEKRIDYAIQIPKLSSLILKHDLNAPLAGLDTIPDE
DEPPVAVIFWSFRIMISLGFAMLGLGVWSLWRRIRGKLYNDDLLKRAAIVMGPMGFVAVLAGWVTTEVGRQPFTVYGLLR
TTDSLAPIDAPAVAVSLISFIIVYFFVFGAGTYYILRLMNKPTATSGLEINKGPIRTAQNQFIATTDANLKSGAQGDNRG
I

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=476, Percent_Identity=29.2016806722689, Blast_Score=217, Evalue=1e-57,
Organism=Escherichia coli, GI1787212, Length=312, Percent_Identity=34.6153846153846, Blast_Score=205, Evalue=7e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 53234; Mature: 53234

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAIVMLESFTAETLARMQFAFTVSFHIIFPAFSIGVASYLAVLNGLWLKTHDQTYLFLF
CCEEEEEHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEHHH
NYWKKIFAVAFGMGVVSGIVMSYQFGTNWSVFADKTGPILGPLMAYEILSAFFLEAGFLG
HHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
IALFGRERVGNRLHMFAVCMVAFGTLMSATWILSVNSWMQTPAGYSINDVGQFIPEDWWQ
HHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEHHHHCCCCCCCHHHHHHHCCCCHHE
IVFNPSFPYRLVHMVLAAYLTTALVVGAVGALHLLRNKADAAARRMFSMAMWMLIVVAPL
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIVVGDFHGLNTLEYQPAKVMAMEGHYDSHPEGAPLILFGIPNPEEKRIDYAIQIPKLSS
HHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCHHHH
LILKHDLNAPLAGLDTIPDEDEPPVAVIFWSFRIMISLGFAMLGLGVWSLWRRIRGKLYN
HHHHHCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DDLLKRAAIVMGPMGFVAVLAGWVTTEVGRQPFTVYGLLRTTDSLAPIDAPAVAVSLISF
HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH
IIVYFFVFGAGTYYILRLMNKPTATSGLEINKGPIRTAQNQFIATTDANLKSGAQGDNRG
HHHHHHHHHCCHHHHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCCCCCCCCCC
I
C
>Mature Secondary Structure
MRAIVMLESFTAETLARMQFAFTVSFHIIFPAFSIGVASYLAVLNGLWLKTHDQTYLFLF
CCEEEEEHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEHHH
NYWKKIFAVAFGMGVVSGIVMSYQFGTNWSVFADKTGPILGPLMAYEILSAFFLEAGFLG
HHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
IALFGRERVGNRLHMFAVCMVAFGTLMSATWILSVNSWMQTPAGYSINDVGQFIPEDWWQ
HHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEHHHHCCCCCCCHHHHHHHCCCCHHE
IVFNPSFPYRLVHMVLAAYLTTALVVGAVGALHLLRNKADAAARRMFSMAMWMLIVVAPL
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIVVGDFHGLNTLEYQPAKVMAMEGHYDSHPEGAPLILFGIPNPEEKRIDYAIQIPKLSS
HHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCHHHH
LILKHDLNAPLAGLDTIPDEDEPPVAVIFWSFRIMISLGFAMLGLGVWSLWRRIRGKLYN
HHHHHCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DDLLKRAAIVMGPMGFVAVLAGWVTTEVGRQPFTVYGLLRTTDSLAPIDAPAVAVSLISF
HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH
IIVYFFVFGAGTYYILRLMNKPTATSGLEINKGPIRTAQNQFIATTDANLKSGAQGDNRG
HHHHHHHHHCCHHHHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCCCCCCCCCC
I
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]