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The map label for this gene is cydB [H]

Identifier: 119945485

GI number: 119945485

Start: 2171173

End: 2172177

Strand: Reverse

Name: cydB [H]

Synonym: Ping_1786

Alternate gene names: 119945485

Gene position: 2172177-2171173 (Counterclockwise)

Preceding gene: 119945486

Following gene: 119945484

Centisome position: 47.64

GC content: 45.27

Gene sequence:

>1005_bases
GTGGAATTTGAATTATCGTTTATCTTGGCGATGATTATCGCCTTCGCCGTACTCAGCTATGTCATTTTAGATGGCTTTGA
TCTGGGCATCGGTATTTTGTTTCCATCAGCTAAATCAGAGCAAGACAAGTCCGTTATGATGAATACCATTGCCCCCGTTT
GGGATGGTAATGAAACTTGGCTAGTAATGGGAGGCGGTGGTTTATTGGCCGTTTTCCCTCTAGCCTATGCCATTATTATG
CCAGCCTTGTACATGCCTATTATACTGATGCTGTTAGCACTCATTTTCAGAGGCGTTGCTTTTGAATATCGCTGGCGAAC
CGTTCGTTGGAAGCCTGTTTGGGACTTTGCCTTCTTCGCAGGCTCGGTTATAGCAGCCTTTACTCAAGGTATTTCGCTCG
GGGCGTTGGTGCAGGGTATTAAAGTGGCAAACCGCGCCTACGCTGGAGGCTGGTGGGATTGGCTAACCCCGTTCTCATTA
TTAACCGGCTGTGCAGTTGTCATTGGCTACGGCTTACTGGGCTCCACCTGGTTAATTATGAAAACAGAAGGTGAACTACA
AACTAGAATGCGGGGTTATGCAAAATGGTTAGGCATTGCTACCCTAGGTTTTATAGGTGTTGTCAGTATCCTCACACCCT
TTCAAGACCCCGCTTATTTCCAACGTTGGTTTACACTGCCAGGCAGCATTTTTAGTGTATTTGTTCCAGCTTTAGTCGGG
CTGTGTACTTGGTTGCTATTTATGGGATTGAAACAAGACAAAGAAGCGCAACCATTTCTCGCCTCACTCGGGCTATTTGT
CCTCAGTTTCATCGGTATTCTTGTTAGTTTTTACCCTAATATTGTACCGCCAAATCTAACAATCGTTGAAGCAGCAGCGC
CTGATTCAAGTTTAAGATTCACACTGGTGGGGGTGATGGTTTTAGTGCCACTTATTTTAATCTATACCGCTTATGCATAT
TGGGTGTTCCGCGGCAAAGTAAAACCTGAGGATGGCTATCACTAA

Upstream 100 bases:

>100_bases
TCAGGTCTTGAGATAAATAAGGGCCCTATCCGGACCGCACAAAATCAATTTATTGCAACAACTGACGCAAACCTTAAGTC
AGGTGCGCAAGGAGACAATC

Downstream 100 bases:

>100_bases
TGGCTTGGAAAAAATGTAAAAAACTAGCCTGGTTTGTTGGCATTTGGCTTGCTGGGGTTTTAGCACTGGGCATTGTGGCT
ATGCTGATAAAGTCAGCAAT

Product: cytochrome bd-type quinol oxidase subunit 2

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MEFELSFILAMIIAFAVLSYVILDGFDLGIGILFPSAKSEQDKSVMMNTIAPVWDGNETWLVMGGGGLLAVFPLAYAIIM
PALYMPIILMLLALIFRGVAFEYRWRTVRWKPVWDFAFFAGSVIAAFTQGISLGALVQGIKVANRAYAGGWWDWLTPFSL
LTGCAVVIGYGLLGSTWLIMKTEGELQTRMRGYAKWLGIATLGFIGVVSILTPFQDPAYFQRWFTLPGSIFSVFVPALVG
LCTWLLFMGLKQDKEAQPFLASLGLFVLSFIGILVSFYPNIVPPNLTIVEAAAPDSSLRFTLVGVMVLVPLILIYTAYAY
WVFRGKVKPEDGYH

Sequences:

>Translated_334_residues
MEFELSFILAMIIAFAVLSYVILDGFDLGIGILFPSAKSEQDKSVMMNTIAPVWDGNETWLVMGGGGLLAVFPLAYAIIM
PALYMPIILMLLALIFRGVAFEYRWRTVRWKPVWDFAFFAGSVIAAFTQGISLGALVQGIKVANRAYAGGWWDWLTPFSL
LTGCAVVIGYGLLGSTWLIMKTEGELQTRMRGYAKWLGIATLGFIGVVSILTPFQDPAYFQRWFTLPGSIFSVFVPALVG
LCTWLLFMGLKQDKEAQPFLASLGLFVLSFIGILVSFYPNIVPPNLTIVEAAAPDSSLRFTLVGVMVLVPLILIYTAYAY
WVFRGKVKPEDGYH
>Mature_334_residues
MEFELSFILAMIIAFAVLSYVILDGFDLGIGILFPSAKSEQDKSVMMNTIAPVWDGNETWLVMGGGGLLAVFPLAYAIIM
PALYMPIILMLLALIFRGVAFEYRWRTVRWKPVWDFAFFAGSVIAAFTQGISLGALVQGIKVANRAYAGGWWDWLTPFSL
LTGCAVVIGYGLLGSTWLIMKTEGELQTRMRGYAKWLGIATLGFIGVVSILTPFQDPAYFQRWFTLPGSIFSVFVPALVG
LCTWLLFMGLKQDKEAQPFLASLGLFVLSFIGILVSFYPNIVPPNLTIVEAAAPDSSLRFTLVGVMVLVPLILIYTAYAY
WVFRGKVKPEDGYH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=370, Percent_Identity=28.9189189189189, Blast_Score=150, Evalue=8e-38,
Organism=Escherichia coli, GI1787213, Length=365, Percent_Identity=30.4109589041096, Blast_Score=141, Evalue=7e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36970; Mature: 36970

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFELSFILAMIIAFAVLSYVILDGFDLGIGILFPSAKSEQDKSVMMNTIAPVWDGNETW
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEE
LVMGGGGLLAVFPLAYAIIMPALYMPIILMLLALIFRGVAFEYRWRTVRWKPVWDFAFFA
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEHHHHHHHH
GSVIAAFTQGISLGALVQGIKVANRAYAGGWWDWLTPFSLLTGCAVVIGYGLLGSTWLIM
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
KTEGELQTRMRGYAKWLGIATLGFIGVVSILTPFQDPAYFQRWFTLPGSIFSVFVPALVG
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
LCTWLLFMGLKQDKEAQPFLASLGLFVLSFIGILVSFYPNIVPPNLTIVEAAAPDSSLRF
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHH
TLVGVMVLVPLILIYTAYAYWVFRGKVKPEDGYH
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MEFELSFILAMIIAFAVLSYVILDGFDLGIGILFPSAKSEQDKSVMMNTIAPVWDGNETW
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEE
LVMGGGGLLAVFPLAYAIIMPALYMPIILMLLALIFRGVAFEYRWRTVRWKPVWDFAFFA
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEHHHHHHHH
GSVIAAFTQGISLGALVQGIKVANRAYAGGWWDWLTPFSLLTGCAVVIGYGLLGSTWLIM
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
KTEGELQTRMRGYAKWLGIATLGFIGVVSILTPFQDPAYFQRWFTLPGSIFSVFVPALVG
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
LCTWLLFMGLKQDKEAQPFLASLGLFVLSFIGILVSFYPNIVPPNLTIVEAAAPDSSLRF
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHH
TLVGVMVLVPLILIYTAYAYWVFRGKVKPEDGYH
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]