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The map label for this gene is yfiA [C]

Identifier: 119945465

GI number: 119945465

Start: 2144881

End: 2145249

Strand: Reverse

Name: yfiA [C]

Synonym: Ping_1763

Alternate gene names: 119945465

Gene position: 2145249-2144881 (Counterclockwise)

Preceding gene: 119945470

Following gene: 119945462

Centisome position: 47.05

GC content: 36.59

Gene sequence:

>369_bases
ATGAAAATAAATATTTCTGGTCACCATGTTGATGTTACTGATAGCATCAAAGAACACTTAGAAGAAAAATTCGCTAAAAT
AGCGACCCATTTCCCCACGCTTATCTCGCTAGATATCATCATTTCCAAAGAGCATGGTGAGTTTGATGTTGAAATTAGCA
CCAATTATGAAGGAACTAGCATTGCCGCTAAAGGTAACGATTATGTCATGTACCCTGCTATTGCAAGTGCTGCTAAAAAA
TTAGAGACAGTATTAAAGCACCGCAAAGGTCAATTAAAAGCAGATTTACATGAAAAGCCCGACCTGACTGAACCTGAAAC
GGATTACGAAACGGATGAAGAAAAAGAACAAGAAATGAACTTAAATTAA

Upstream 100 bases:

>100_bases
TAATTATGTAAGCTTACATTTGTACAACGAGTTTATTTATGTAAATATATAAATGTAATACGCGATAAATTTGGCAAGTA
AATTTTGTTAAGGACAATCT

Downstream 100 bases:

>100_bases
CCCGACTCGTTCTGTTAACGACCCAAAAACGCAGCTTACGCTGCGTTTTTTTTTGGGTACAATAAACAATGACAAAAGCG
AAAGCACTACAGGTTAGATG

Product: sigma 54 modulation protein/ribosomal protein S30EA

Products: NA

Alternate protein names: ORF107 [H]

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MKINISGHHVDVTDSIKEHLEEKFAKIATHFPTLISLDIIISKEHGEFDVEISTNYEGTSIAAKGNDYVMYPAIASAAKK
LETVLKHRKGQLKADLHEKPDLTEPETDYETDEEKEQEMNLN

Sequences:

>Translated_122_residues
MKINISGHHVDVTDSIKEHLEEKFAKIATHFPTLISLDIIISKEHGEFDVEISTNYEGTSIAAKGNDYVMYPAIASAAKK
LETVLKHRKGQLKADLHEKPDLTEPETDYETDEEKEQEMNLN
>Mature_122_residues
MKINISGHHVDVTDSIKEHLEEKFAKIATHFPTLISLDIIISKEHGEFDVEISTNYEGTSIAAKGNDYVMYPAIASAAKK
LETVLKHRKGQLKADLHEKPDLTEPETDYETDEEKEQEMNLN

Specific function: Probably modulates the activity of sigma(54) (rpoN) [H]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

None

Paralogues:

None

Copy number: 600 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 13809; Mature: 13809

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKINISGHHVDVTDSIKEHLEEKFAKIATHFPTLISLDIIISKEHGEFDVEISTNYEGTS
CEECCCCCEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEECCCCCCE
IAAKGNDYVMYPAIASAAKKLETVLKHRKGQLKADLHEKPDLTEPETDYETDEEKEQEMN
EEECCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCC
LN
CC
>Mature Secondary Structure
MKINISGHHVDVTDSIKEHLEEKFAKIATHFPTLISLDIIISKEHGEFDVEISTNYEGTS
CEECCCCCEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEECCCCCCE
IAAKGNDYVMYPAIASAAKKLETVLKHRKGQLKADLHEKPDLTEPETDYETDEEKEQEMN
EEECCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCC
LN
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2695747; 3481423 [H]