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The map label for this gene is ltrA [H]

Identifier: 119945399

GI number: 119945399

Start: 2062758

End: 2063660

Strand: Reverse

Name: ltrA [H]

Synonym: Ping_1689

Alternate gene names: 119945399

Gene position: 2063660-2062758 (Counterclockwise)

Preceding gene: 119945403

Following gene: 119945393

Centisome position: 45.26

GC content: 39.42

Gene sequence:

>903_bases
ATGGTGGATGTGAATGAATTATTTCTATTTGTCTTAGTGGTTGAAGCCGGATCTTTTAATAAGGCGGCAAGCATCGCCGG
TATATCGACACCCGCATTAAGTAAAAAAATATCTAAGTTAGAAAAAGAGCTGTCGGTGCAGCTTTTGTATCGTACCACAC
GTAAGCTGAGCTTAAGTGAAGCGGGAGAAACGCTTTATAAACATGCAAAAAACATTAATCAACAAGTAAATGAAGCGATA
GGTGCGGTAAGCAATTTTAGTGACAAAATTTCAGGAGAAATCAAGCTTAGTGTCCCAACTATCTCCGGTGAATTATTATT
AGCCGAAATAGTGGCTGAATTTTGTCAGCAGCACCCAGATATCAGTGTGAATATACGCCTTGAAAATGAATTTGCAGACT
TGGTCACAGAAGGCTTAGATCTTGCTATTCGAACAGGAAACTTGGAAAACTCTACCTTAATTGCGAAACCACTCATTGTT
TCCCATTGGATAGTGTGTTGTTCACCCGACTATATTGAGCAACACGGTATGCCAAAAAAAATTGACGCCTTATTAACCCA
CAACTGCCTCGCTTATACCGGCCAAGCAAAAGGTTCACATGATTGGCGATTTGAGCAAAATGGACAAGAGCAAAGTATTC
GTATTTCAGGTAACTTTGCCACAAATAATGCCCAAGCACTGAGAAAAGCAGCGCTTGCAGGATACGGCATAGCTTACGTC
CCACGCTGCGGTGTGTATGAAGATTTACAAAATGGAAAATTAATTGCACTTTTGACAGATTATAAACCCCGCTCTTTAGG
CGTTTATGCCGTATATTCTTACACCCGACATTTACCAACAAAAATTCGTTTATTAATAGAACATATCAAGCAAGGTTACC
AAAACAAAGCAGAGTATTTTTAA

Upstream 100 bases:

>100_bases
CATACCGCTTATGTTATTGTTAATATATAAGTCGTTTATTAATTGATTGTTTCACAAAACGTCGTAATCAGGTTTAGATG
GTCAATTCAGGGGTGAAAAT

Downstream 100 bases:

>100_bases
TCGTTATGCAAAAAGCTATTCCCTAATCGAACCACCCATAATAAATTGGTTATATTTACAACAATAAATTAGACTTAATT
TATTGTTAGCTAGTCTGGTG

Product: transcriptional regulator, substrate-binding of LysR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MVDVNELFLFVLVVEAGSFNKAASIAGISTPALSKKISKLEKELSVQLLYRTTRKLSLSEAGETLYKHAKNINQQVNEAI
GAVSNFSDKISGEIKLSVPTISGELLLAEIVAEFCQQHPDISVNIRLENEFADLVTEGLDLAIRTGNLENSTLIAKPLIV
SHWIVCCSPDYIEQHGMPKKIDALLTHNCLAYTGQAKGSHDWRFEQNGQEQSIRISGNFATNNAQALRKAALAGYGIAYV
PRCGVYEDLQNGKLIALLTDYKPRSLGVYAVYSYTRHLPTKIRLLIEHIKQGYQNKAEYF

Sequences:

>Translated_300_residues
MVDVNELFLFVLVVEAGSFNKAASIAGISTPALSKKISKLEKELSVQLLYRTTRKLSLSEAGETLYKHAKNINQQVNEAI
GAVSNFSDKISGEIKLSVPTISGELLLAEIVAEFCQQHPDISVNIRLENEFADLVTEGLDLAIRTGNLENSTLIAKPLIV
SHWIVCCSPDYIEQHGMPKKIDALLTHNCLAYTGQAKGSHDWRFEQNGQEQSIRISGNFATNNAQALRKAALAGYGIAYV
PRCGVYEDLQNGKLIALLTDYKPRSLGVYAVYSYTRHLPTKIRLLIEHIKQGYQNKAEYF
>Mature_300_residues
MVDVNELFLFVLVVEAGSFNKAASIAGISTPALSKKISKLEKELSVQLLYRTTRKLSLSEAGETLYKHAKNINQQVNEAI
GAVSNFSDKISGEIKLSVPTISGELLLAEIVAEFCQQHPDISVNIRLENEFADLVTEGLDLAIRTGNLENSTLIAKPLIV
SHWIVCCSPDYIEQHGMPKKIDALLTHNCLAYTGQAKGSHDWRFEQNGQEQSIRISGNFATNNAQALRKAALAGYGIAYV
PRCGVYEDLQNGKLIALLTDYKPRSLGVYAVYSYTRHLPTKIRLLIEHIKQGYQNKAEYF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=32.4137931034483, Blast_Score=158, Evalue=4e-40,
Organism=Escherichia coli, GI1789639, Length=303, Percent_Identity=31.6831683168317, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=32.3024054982818, Blast_Score=154, Evalue=5e-39,
Organism=Escherichia coli, GI87081978, Length=297, Percent_Identity=29.6296296296296, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=27.3972602739726, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=27.0547945205479, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1787128, Length=295, Percent_Identity=25.4237288135593, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI145693105, Length=166, Percent_Identity=30.1204819277108, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1787601, Length=177, Percent_Identity=28.2485875706215, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788706, Length=262, Percent_Identity=25.5725190839695, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1786448, Length=282, Percent_Identity=26.9503546099291, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790011, Length=297, Percent_Identity=22.5589225589226, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI157672245, Length=153, Percent_Identity=28.7581699346405, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788297, Length=152, Percent_Identity=34.8684210526316, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1790783, Length=298, Percent_Identity=24.496644295302, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790399, Length=256, Percent_Identity=26.953125, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87082132, Length=271, Percent_Identity=23.6162361623616, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787879, Length=170, Percent_Identity=26.4705882352941, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788481, Length=303, Percent_Identity=20.4620462046205, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789173, Length=259, Percent_Identity=24.7104247104247, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788748, Length=165, Percent_Identity=24.2424242424242, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789506, Length=167, Percent_Identity=25.1497005988024, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33258; Mature: 33258

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDVNELFLFVLVVEAGSFNKAASIAGISTPALSKKISKLEKELSVQLLYRTTRKLSLSE
CCCHHHHHHHHHEEECCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGETLYKHAKNINQQVNEAIGAVSNFSDKISGEIKLSVPTISGELLLAEIVAEFCQQHPD
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC
ISVNIRLENEFADLVTEGLDLAIRTGNLENSTLIAKPLIVSHWIVCCSPDYIEQHGMPKK
EEEEEEECCHHHHHHHCCCEEEEEECCCCCCEEEECHHHHHHEEEECCCHHHHHCCCCHH
IDALLTHNCLAYTGQAKGSHDWRFEQNGQEQSIRISGNFATNNAQALRKAALAGYGIAYV
HHHHHHCCHHEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEC
PRCGVYEDLQNGKLIALLTDYKPRSLGVYAVYSYTRHLPTKIRLLIEHIKQGYQNKAEYF
CCCCCHHHHCCCCEEEEEECCCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVDVNELFLFVLVVEAGSFNKAASIAGISTPALSKKISKLEKELSVQLLYRTTRKLSLSE
CCCHHHHHHHHHEEECCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGETLYKHAKNINQQVNEAIGAVSNFSDKISGEIKLSVPTISGELLLAEIVAEFCQQHPD
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC
ISVNIRLENEFADLVTEGLDLAIRTGNLENSTLIAKPLIVSHWIVCCSPDYIEQHGMPKK
EEEEEEECCHHHHHHHCCCEEEEEECCCCCCEEEECHHHHHHEEEECCCHHHHHCCCCHH
IDALLTHNCLAYTGQAKGSHDWRFEQNGQEQSIRISGNFATNNAQALRKAALAGYGIAYV
HHHHHHCCHHEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEC
PRCGVYEDLQNGKLIALLTDYKPRSLGVYAVYSYTRHLPTKIRLLIEHIKQGYQNKAEYF
CCCCCHHHHCCCCEEEEEECCCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]