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The map label for this gene is rnd [H]

Identifier: 119945380

GI number: 119945380

Start: 2026283

End: 2027392

Strand: Reverse

Name: rnd [H]

Synonym: Ping_1668

Alternate gene names: 119945380

Gene position: 2027392-2026283 (Counterclockwise)

Preceding gene: 119945383

Following gene: 119945379

Centisome position: 44.46

GC content: 38.47

Gene sequence:

>1110_bases
ATGCAATTTGAAATAATTACGACAACAGCACAATTGCATGATTTTATAGCAACCCTTGATGGCAGCCCGATTTCACTTGA
TACAGAATTTGTCCGCACACGCACTTATGCAGCGAATTTAGGCTTGTTACAAATATCTCAAAATACACAAATCACCTTAA
TCGATCCGATTGCGGTTGGCGACCTATCAAGTTTTTGGCAGGCTATTGATAATAAAAATATAATTTTGCATGCCAGCAGT
GAAGATTTAGAAATAATACGAGATCATAAAGGTGATCTCAATTTCACCCTTTTTGATACCCAAATTGCATGCTCTTTTCT
TAATATGGGCGCTTCTCTTGGTTATGCTAAAATGGTTGAAACATTAGAGGCCGTTATCGTTGACAAGGGTGAATCACGAA
CAGACTGGTGTGCGCGTCCTTTAAGCGAAAAGCAAATAAACTATGCCGGCGTGGACGTTTTATATTTACAACCCTGCTTA
GAGAAGCTGCAGCAACAACTTGAAAATAAAAAAATGTTCCCTTTTTTTGAGCAAGAATGCCAAAGTGTACTTGCTCAAAA
AATGGTGAAACAAGATCCTGACAAAGCCTATAAATTGCTTAACAATTTATTTAAATTGGATCGCCAAGGACTGGCTATTA
TAAAGGCATTAGCAAAATGGCGTTTACTCACCGCACAAGAACGTAATCTTGCGCTTAACTTTGTTGTAAAAGCTGATCAC
CTGTGGTTATTGGCTTATTATCAACCCACTTCTTTAGACGATCTGCGTCGTTTAAATTTATTGCCCAATGAAATTCGGAT
TCATGGACAACAGATTTTAACCATTATGACCCAGGTAATCAGTCAAGATGAAAGTACTTATCCCCCTCTGGTGAACCGTT
TGGTTGATTTTCCCGCTTACAAAAGCACGGTGAAATCAATGCGCGATAAAATTCAGCTTTGCGCCGAAAAATATGACTTA
CCCCTTGAGTTACTTGCCTCTAAACGTGTTATTAACGAATATTTAAGCTGGTTATGGAAATTAACCAATCTGCAAAGACA
AACAGCCAATAAACCCAAGCTGTTAACGGGCTGGAGATTTGAATTAATCGGGCATCAGTTCGAACACTAA

Upstream 100 bases:

>100_bases
TATTGATAACTGCACGGCAAATGTGAATATCAATGGCAGATTAGCAATTAATTACGTAATATAGCCCTTCTTTAAATAAA
ATAATATATAGGTTGCACCG

Downstream 100 bases:

>100_bases
ATTCCAGTTGTAATAATCGGGCAGCAGGTTCATTCTCTAACGGTCTGATGGTGTAAAACCCATTCAAAAATTATAACATT
ATGCAGATAGTGCTTATCTG

Product: ribonuclease D

Products: NA

Alternate protein names: RNase D [H]

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MQFEIITTTAQLHDFIATLDGSPISLDTEFVRTRTYAANLGLLQISQNTQITLIDPIAVGDLSSFWQAIDNKNIILHASS
EDLEIIRDHKGDLNFTLFDTQIACSFLNMGASLGYAKMVETLEAVIVDKGESRTDWCARPLSEKQINYAGVDVLYLQPCL
EKLQQQLENKKMFPFFEQECQSVLAQKMVKQDPDKAYKLLNNLFKLDRQGLAIIKALAKWRLLTAQERNLALNFVVKADH
LWLLAYYQPTSLDDLRRLNLLPNEIRIHGQQILTIMTQVISQDESTYPPLVNRLVDFPAYKSTVKSMRDKIQLCAEKYDL
PLELLASKRVINEYLSWLWKLTNLQRQTANKPKLLTGWRFELIGHQFEH

Sequences:

>Translated_369_residues
MQFEIITTTAQLHDFIATLDGSPISLDTEFVRTRTYAANLGLLQISQNTQITLIDPIAVGDLSSFWQAIDNKNIILHASS
EDLEIIRDHKGDLNFTLFDTQIACSFLNMGASLGYAKMVETLEAVIVDKGESRTDWCARPLSEKQINYAGVDVLYLQPCL
EKLQQQLENKKMFPFFEQECQSVLAQKMVKQDPDKAYKLLNNLFKLDRQGLAIIKALAKWRLLTAQERNLALNFVVKADH
LWLLAYYQPTSLDDLRRLNLLPNEIRIHGQQILTIMTQVISQDESTYPPLVNRLVDFPAYKSTVKSMRDKIQLCAEKYDL
PLELLASKRVINEYLSWLWKLTNLQRQTANKPKLLTGWRFELIGHQFEH
>Mature_369_residues
MQFEIITTTAQLHDFIATLDGSPISLDTEFVRTRTYAANLGLLQISQNTQITLIDPIAVGDLSSFWQAIDNKNIILHASS
EDLEIIRDHKGDLNFTLFDTQIACSFLNMGASLGYAKMVETLEAVIVDKGESRTDWCARPLSEKQINYAGVDVLYLQPCL
EKLQQQLENKKMFPFFEQECQSVLAQKMVKQDPDKAYKLLNNLFKLDRQGLAIIKALAKWRLLTAQERNLALNFVVKADH
LWLLAYYQPTSLDDLRRLNLLPNEIRIHGQQILTIMTQVISQDESTYPPLVNRLVDFPAYKSTVKSMRDKIQLCAEKYDL
PLELLASKRVINEYLSWLWKLTNLQRQTANKPKLLTGWRFELIGHQFEH

Specific function: Cleaves multimeric tRNA precursor at the spacer region. Contribute to the 3' maturation of several stable RNAs [H]

COG id: COG0349

COG function: function code J; Ribonuclease D

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HRDC domain [H]

Homologues:

Organism=Escherichia coli, GI1788105, Length=373, Percent_Identity=39.6782841823056, Blast_Score=265, Evalue=3e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002562
- InterPro:   IPR002121
- InterPro:   IPR010997
- InterPro:   IPR006292
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01612 3_5_exonuc; PF00570 HRDC [H]

EC number: =3.1.13.5 [H]

Molecular weight: Translated: 42463; Mature: 42463

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS50967 HRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFEIITTTAQLHDFIATLDGSPISLDTEFVRTRTYAANLGLLQISQNTQITLIDPIAVG
CEEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCEEEEECCHHHC
DLSSFWQAIDNKNIILHASSEDLEIIRDHKGDLNFTLFDTQIACSFLNMGASLGYAKMVE
CHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCCCHHHHHH
TLEAVIVDKGESRTDWCARPLSEKQINYAGVDVLYLQPCLEKLQQQLENKKMFPFFEQEC
HHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
QSVLAQKMVKQDPDKAYKLLNNLFKLDRQGLAIIKALAKWRLLTAQERNLALNFVVKADH
HHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECC
LWLLAYYQPTSLDDLRRLNLLPNEIRIHGQQILTIMTQVISQDESTYPPLVNRLVDFPAY
EEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHH
KSTVKSMRDKIQLCAEKYDLPLELLASKRVINEYLSWLWKLTNLQRQTANKPKLLTGWRF
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHH
ELIGHQFEH
HHHCCCCCC
>Mature Secondary Structure
MQFEIITTTAQLHDFIATLDGSPISLDTEFVRTRTYAANLGLLQISQNTQITLIDPIAVG
CEEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCEEEEECCHHHC
DLSSFWQAIDNKNIILHASSEDLEIIRDHKGDLNFTLFDTQIACSFLNMGASLGYAKMVE
CHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCCCHHHHHH
TLEAVIVDKGESRTDWCARPLSEKQINYAGVDVLYLQPCLEKLQQQLENKKMFPFFEQEC
HHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
QSVLAQKMVKQDPDKAYKLLNNLFKLDRQGLAIIKALAKWRLLTAQERNLALNFVVKADH
HHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECC
LWLLAYYQPTSLDDLRRLNLLPNEIRIHGQQILTIMTQVISQDESTYPPLVNRLVDFPAY
EEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHH
KSTVKSMRDKIQLCAEKYDLPLELLASKRVINEYLSWLWKLTNLQRQTANKPKLLTGWRF
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHH
ELIGHQFEH
HHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3041371; 9097040; 9278503; 8107670 [H]