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The map label for this gene is cph2 [H]

Identifier: 119944877

GI number: 119944877

Start: 1404550

End: 1405467

Strand: Direct

Name: cph2 [H]

Synonym: Ping_1121

Alternate gene names: 119944877

Gene position: 1404550-1405467 (Clockwise)

Preceding gene: 119944876

Following gene: 119944878

Centisome position: 30.8

GC content: 39.0

Gene sequence:

>918_bases
ATGTCAGATTCAATTGAATTTCTTAAATCAGTACTTAATACGATCACCGACCAGATAGTTGTTATAGATAAGAACGGTGA
TATAAAATTTGTCAATCACAGCTGGACTGAGTTTGGCCGGGATAATGATTGTCAAATAAAGACTGAATGGATTGGCATAA
ATTACCTTAATGGATATGATAATACTTCTGGGGCAGACGCTGATTTCGGCGTTACGGCAGTAAATGGAATTCGAGCCGTC
ATTATCGGGCAACAGCCTGATTTTTACCTTGAATATGCTTGTCATAGTCCAGATGAAAAACGATTTTTCATGATGCAGGT
AACACCTTTTATACATCAGGAAGTCCAATTTTTTGTCATCTCTCATAAAAATATTACTAATCGAAAGTTAGCCGAGGAAA
AAGTCCTTCACTTATCCCAGATTGATGGTCTCACCGGTATTGCCAATAGGCGATATTTTGATGAGACCCTTGAAAATGAG
TGGAAGCGCTGTGCTCGTTCAAAACAACCACTTACACTTGCCATGATTGATGTTGATCATTTTAAGTTGCTCAATGACAC
ATATGGGCATCAAGCCGGTGATAATAGTCTGGTAATGATTGGCAATCTGCTTAAAGACTTAGCTCAAAGACCTGCCGACC
TCTGTTGCAGATACGGTGGAGAGGAGTTTGCAATCATTATGCCACAAACATCAAACGCTCAGGCTGTGCATATTGCCAGT
AAACTTATAACACTTATCGCAGCTCTTAACATTCCCAATAAAAAATCACCCACCAAAGCAATATTAACAGTGAGTATTGG
TCTGGCTACTGTCTTACCCAGTCAAGAAAATGATACAAGAAGTCTCATTGCTAAAGCAGATAAATCACTTTACAGAGCAA
AAAAGAAGGGAAGAAATCGAGTTGAGTCGAACCTTTAG

Upstream 100 bases:

>100_bases
CTTTATCAATGTGTCAATAGGGGCGAGAAGTGTGAGCTAAAACGGTTCATAATCTTACCCTTTGCGGCTAATATAGGTAA
ATCTATTACGGGCGTTAATA

Downstream 100 bases:

>100_bases
ACCTGCGTATTATCCTTGATCTTACATCCCAAACTCAGTAACCAGCAATCTATGATCTGAGTCGGGGACAAGCTGGTAAT
CTTTGCTGATAACCTCAAAT

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MSDSIEFLKSVLNTITDQIVVIDKNGDIKFVNHSWTEFGRDNDCQIKTEWIGINYLNGYDNTSGADADFGVTAVNGIRAV
IIGQQPDFYLEYACHSPDEKRFFMMQVTPFIHQEVQFFVISHKNITNRKLAEEKVLHLSQIDGLTGIANRRYFDETLENE
WKRCARSKQPLTLAMIDVDHFKLLNDTYGHQAGDNSLVMIGNLLKDLAQRPADLCCRYGGEEFAIIMPQTSNAQAVHIAS
KLITLIAALNIPNKKSPTKAILTVSIGLATVLPSQENDTRSLIAKADKSLYRAKKKGRNRVESNL

Sequences:

>Translated_305_residues
MSDSIEFLKSVLNTITDQIVVIDKNGDIKFVNHSWTEFGRDNDCQIKTEWIGINYLNGYDNTSGADADFGVTAVNGIRAV
IIGQQPDFYLEYACHSPDEKRFFMMQVTPFIHQEVQFFVISHKNITNRKLAEEKVLHLSQIDGLTGIANRRYFDETLENE
WKRCARSKQPLTLAMIDVDHFKLLNDTYGHQAGDNSLVMIGNLLKDLAQRPADLCCRYGGEEFAIIMPQTSNAQAVHIAS
KLITLIAALNIPNKKSPTKAILTVSIGLATVLPSQENDTRSLIAKADKSLYRAKKKGRNRVESNL
>Mature_304_residues
SDSIEFLKSVLNTITDQIVVIDKNGDIKFVNHSWTEFGRDNDCQIKTEWIGINYLNGYDNTSGADADFGVTAVNGIRAVI
IGQQPDFYLEYACHSPDEKRFFMMQVTPFIHQEVQFFVISHKNITNRKLAEEKVLHLSQIDGLTGIANRRYFDETLENEW
KRCARSKQPLTLAMIDVDHFKLLNDTYGHQAGDNSLVMIGNLLKDLAQRPADLCCRYGGEEFAIIMPQTSNAQAVHIASK
LITLIAALNIPNKKSPTKAILTVSIGLATVLPSQENDTRSLIAKADKSLYRAKKKGRNRVESNL

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=188, Percent_Identity=38.8297872340425, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI87081881, Length=178, Percent_Identity=36.5168539325843, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI145693134, Length=175, Percent_Identity=35.4285714285714, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI87082007, Length=187, Percent_Identity=31.5508021390374, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=33.5365853658537, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=33.9506172839506, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787541, Length=211, Percent_Identity=27.4881516587678, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1788085, Length=208, Percent_Identity=28.8461538461538, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787802, Length=165, Percent_Identity=32.1212121212121, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788381, Length=183, Percent_Identity=26.2295081967213, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081977, Length=212, Percent_Identity=28.3018867924528, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787056, Length=165, Percent_Identity=32.7272727272727, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081974, Length=161, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788956, Length=156, Percent_Identity=29.4871794871795, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 34280; Mature: 34148

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSIEFLKSVLNTITDQIVVIDKNGDIKFVNHSWTEFGRDNDCQIKTEWIGINYLNGYD
CCCHHHHHHHHHHHHCCEEEEEECCCCEEEEECCHHHCCCCCCCEEEEEEEEEEEECCCC
NTSGADADFGVTAVNGIRAVIIGQQPDFYLEYACHSPDEKRFFMMQVTPFIHQEVQFFVI
CCCCCCCCCCEEEECCEEEEEECCCCCEEEEEEECCCCCCEEEEEEECHHHHCCEEEEEE
SHKNITNRKLAEEKVLHLSQIDGLTGIANRRYFDETLENEWKRCARSKQPLTLAMIDVDH
ECCCCCHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEECHH
FKLLNDTYGHQAGDNSLVMIGNLLKDLAQRPADLCCRYGGEEFAIIMPQTSNAQAVHIAS
HHHHHHHCCCCCCCCCEEEHHHHHHHHHHCCHHHHHHCCCCEEEEEEECCCCCCHHHHHH
KLITLIAALNIPNKKSPTKAILTVSIGLATVLPSQENDTRSLIAKADKSLYRAKKKGRNR
HHHHHHHHHCCCCCCCCCEEEEEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VESNL
HHCCC
>Mature Secondary Structure 
SDSIEFLKSVLNTITDQIVVIDKNGDIKFVNHSWTEFGRDNDCQIKTEWIGINYLNGYD
CCHHHHHHHHHHHHCCEEEEEECCCCEEEEECCHHHCCCCCCCEEEEEEEEEEEECCCC
NTSGADADFGVTAVNGIRAVIIGQQPDFYLEYACHSPDEKRFFMMQVTPFIHQEVQFFVI
CCCCCCCCCCEEEECCEEEEEECCCCCEEEEEEECCCCCCEEEEEEECHHHHCCEEEEEE
SHKNITNRKLAEEKVLHLSQIDGLTGIANRRYFDETLENEWKRCARSKQPLTLAMIDVDH
ECCCCCHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEECHH
FKLLNDTYGHQAGDNSLVMIGNLLKDLAQRPADLCCRYGGEEFAIIMPQTSNAQAVHIAS
HHHHHHHCCCCCCCCCEEEHHHHHHHHHHCCHHHHHHCCCCEEEEEEECCCCCCHHHHHH
KLITLIAALNIPNKKSPTKAILTVSIGLATVLPSQENDTRSLIAKADKSLYRAKKKGRNR
HHHHHHHHHCCCCCCCCCEEEEEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VESNL
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]