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The map label for this gene is ygcF [H]

Identifier: 119944858

GI number: 119944858

Start: 1370597

End: 1371337

Strand: Direct

Name: ygcF [H]

Synonym: Ping_1100

Alternate gene names: 119944858

Gene position: 1370597-1371337 (Clockwise)

Preceding gene: 119944855

Following gene: 119944859

Centisome position: 30.06

GC content: 40.62

Gene sequence:

>741_bases
ATGTTCACTTACTTATTGCGTTACACTGACAAGATCCTGCTACCAATCGAGCATAATAAAGCAATGAATCAAAACTATAA
AGTAAACGAATTATTTCAAACTATTCAGGGAGAAGGTTTTAATACCGGTGTACCTGCTATTTTTCTACGTTTACAGGGGT
GTGATGTAGGTTGTGCCTGGTGCGATACTAAACATACTTGGGAAATAAACCCAGATAAACAGACAGAACTGATTTTATTA
ACCGGCAGCAGTAATGAATCAACACGTTGGGCAAATGTTAACGCGCGGGAGATAGTTGCTGAAATTAAACGTCTTGGATA
TAGCGCTAATTTAGTGGTGATCACCGGTGGCGAACCTTGTCTTGCAGACTTGCGAGAGTTAACCACTGTACTGCATGAGT
TTGACTTTAAAACTCAGATCGAAACCAGTGGCACTTATCCTGTTTTAGTTGCGCCGCCGACCTGGGTGACTCTCTCTCCA
AAGGTTAATATGCGCGCAGGTAAAGTTGTTTTGCAATCGGCTCTTGAACGTGCCGATGAAATTAAACATCCTGTTGGTAC
TGAAAAAGATATCGAACAGTTAGATGCATTATTGGAAAATCTTAAATCGATAGAAGATAAAGTTATCTGTTTACAGCCAA
TTTCGCAAAAGGTAAAAGCGACGCTTTTATGCAGTCAGGTCTGTATCGAACGTAACTGGCGTTTATCGGTGCAGATGCAT
AAGTATCTGGGAATCGATTAG

Upstream 100 bases:

>100_bases
TTTACATATAAAGCGGATCCTGAGTAATAATACATAAGTTTTTGAACCCTTTGAATTTTATTGTTATCTTTTTGTTCTAT
ATAAAAATTAAGTTTTAAAT

Downstream 100 bases:

>100_bases
TGATAGTCAATAGACTATTTGATTTTTGAAAAATCGATAATTTTCCTGAAGGGGGACCAAAGTTGCAGTAATAGCGGCCC
TCGTGTGTACTTATACCCAT

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MFTYLLRYTDKILLPIEHNKAMNQNYKVNELFQTIQGEGFNTGVPAIFLRLQGCDVGCAWCDTKHTWEINPDKQTELILL
TGSSNESTRWANVNAREIVAEIKRLGYSANLVVITGGEPCLADLRELTTVLHEFDFKTQIETSGTYPVLVAPPTWVTLSP
KVNMRAGKVVLQSALERADEIKHPVGTEKDIEQLDALLENLKSIEDKVICLQPISQKVKATLLCSQVCIERNWRLSVQMH
KYLGID

Sequences:

>Translated_246_residues
MFTYLLRYTDKILLPIEHNKAMNQNYKVNELFQTIQGEGFNTGVPAIFLRLQGCDVGCAWCDTKHTWEINPDKQTELILL
TGSSNESTRWANVNAREIVAEIKRLGYSANLVVITGGEPCLADLRELTTVLHEFDFKTQIETSGTYPVLVAPPTWVTLSP
KVNMRAGKVVLQSALERADEIKHPVGTEKDIEQLDALLENLKSIEDKVICLQPISQKVKATLLCSQVCIERNWRLSVQMH
KYLGID
>Mature_246_residues
MFTYLLRYTDKILLPIEHNKAMNQNYKVNELFQTIQGEGFNTGVPAIFLRLQGCDVGCAWCDTKHTWEINPDKQTELILL
TGSSNESTRWANVNAREIVAEIKRLGYSANLVVITGGEPCLADLRELTTVLHEFDFKTQIETSGTYPVLVAPPTWVTLSP
KVNMRAGKVVLQSALERADEIKHPVGTEKDIEQLDALLENLKSIEDKVICLQPISQKVKATLLCSQVCIERNWRLSVQMH
KYLGID

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=221, Percent_Identity=58.8235294117647, Blast_Score=270, Evalue=5e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 27772; Mature: 27772

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTYLLRYTDKILLPIEHNKAMNQNYKVNELFQTIQGEGFNTGVPAIFLRLQGCDVGCAW
CEEEEEECCCEEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEE
CDTKHTWEINPDKQTELILLTGSSNESTRWANVNAREIVAEIKRLGYSANLVVITGGEPC
ECCCCEEEECCCCCEEEEEEECCCCCCCEEECCCHHHHHHHHHHCCCCCCEEEEECCCHH
LADLRELTTVLHEFDFKTQIETSGTYPVLVAPPTWVTLSPKVNMRAGKVVLQSALERADE
HHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHH
IKHPVGTEKDIEQLDALLENLKSIEDKVICLQPISQKVKATLLCSQVCIERNWRLSVQMH
HCCCCCCHHHHHHHHHHHHHHHHHHHCEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEH
KYLGID
HHCCCC
>Mature Secondary Structure
MFTYLLRYTDKILLPIEHNKAMNQNYKVNELFQTIQGEGFNTGVPAIFLRLQGCDVGCAW
CEEEEEECCCEEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEE
CDTKHTWEINPDKQTELILLTGSSNESTRWANVNAREIVAEIKRLGYSANLVVITGGEPC
ECCCCEEEECCCCCEEEEEEECCCCCCCEEECCCHHHHHHHHHHCCCCCCEEEEECCCHH
LADLRELTTVLHEFDFKTQIETSGTYPVLVAPPTWVTLSPKVNMRAGKVVLQSALERADE
HHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHH
IKHPVGTEKDIEQLDALLENLKSIEDKVICLQPISQKVKATLLCSQVCIERNWRLSVQMH
HCCCCCCHHHHHHHHHHHHHHHHHHHCEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEH
KYLGID
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]