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The map label for this gene is yceD [H]

Identifier: 119944842

GI number: 119944842

Start: 1356155

End: 1356676

Strand: Direct

Name: yceD [H]

Synonym: Ping_1084

Alternate gene names: 119944842

Gene position: 1356155-1356676 (Clockwise)

Preceding gene: 119944840

Following gene: 119944843

Centisome position: 29.74

GC content: 36.59

Gene sequence:

>522_bases
ATGCAAAACGTTAAATTACCGATAATGGTTGATCCTGTTAGAGCTGCACAAAATCAGTTGGAGTTAGACGCTATAATTCC
AAAAGCGCTTTTGAGCAGATTAGCAGAGTCAACAATCAGTATTCAGTCTGATATCAAGACTGCTTTTTCATTTGATATTG
ATAAGCAAAAGCTAAGAATATTTAATGGTAAAGCCAGTGTTGCAGTAGAGCTTATTTGTCAACGGTGCAATGAGCCTATG
ATTTATCAGTGTGAAGCTGAATTTAAATACTGTCCTGTTCATAACCAAGAACAGGAAAATAATTTACCTGACGCCTACGA
AGCCATTTATTATGATGAAAATGGTGAGGTGAATCTTCATCAAGTTGTAGAAGATGAACTGATAGTGACTCTTCCGCAAA
TTGCAAAACATGCAATTGAAGAATGTCAGCAAAGTAAGTTTGAACTTACCTTTGGTGAAGTTGATGAAGAGAAACAGCGT
CCCAACCCATTTGATGCTCTAGCTCAATTAAAGCACAAGTAA

Upstream 100 bases:

>100_bases
CTAAAGCTTAAAAAATATTTAAGCTTTAGAATCGAGAAATTTAAGAAAAAGAGCGCTTTTTCTTTGACTATCTTGACAGC
AATCTATAGTATTCGCGGCC

Downstream 100 bases:

>100_bases
CCAGTAGGAATTTTTAACATGGCTGTACAAAAAAGTCGTAAAACTCGTTCAAAACGTGGCATGCGTCGTTCACATGATGC
ACTCACTGCGCCAGCGCAAC

Product: hypothetical protein

Products: NA

Alternate protein names: G30K [H]

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MQNVKLPIMVDPVRAAQNQLELDAIIPKALLSRLAESTISIQSDIKTAFSFDIDKQKLRIFNGKASVAVELICQRCNEPM
IYQCEAEFKYCPVHNQEQENNLPDAYEAIYYDENGEVNLHQVVEDELIVTLPQIAKHAIEECQQSKFELTFGEVDEEKQR
PNPFDALAQLKHK

Sequences:

>Translated_173_residues
MQNVKLPIMVDPVRAAQNQLELDAIIPKALLSRLAESTISIQSDIKTAFSFDIDKQKLRIFNGKASVAVELICQRCNEPM
IYQCEAEFKYCPVHNQEQENNLPDAYEAIYYDENGEVNLHQVVEDELIVTLPQIAKHAIEECQQSKFELTFGEVDEEKQR
PNPFDALAQLKHK
>Mature_173_residues
MQNVKLPIMVDPVRAAQNQLELDAIIPKALLSRLAESTISIQSDIKTAFSFDIDKQKLRIFNGKASVAVELICQRCNEPM
IYQCEAEFKYCPVHNQEQENNLPDAYEAIYYDENGEVNLHQVVEDELIVTLPQIAKHAIEECQQSKFELTFGEVDEEKQR
PNPFDALAQLKHK

Specific function: Unknown

COG id: COG1399

COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0159 [H]

Homologues:

Organism=Escherichia coli, GI1787329, Length=173, Percent_Identity=45.6647398843931, Blast_Score=163, Evalue=5e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003772 [H]

Pfam domain/function: PF02620 DUF177 [H]

EC number: NA

Molecular weight: Translated: 19806; Mature: 19806

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNVKLPIMVDPVRAAQNQLELDAIIPKALLSRLAESTISIQSDIKTAFSFDIDKQKLRI
CCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEE
FNGKASVAVELICQRCNEPMIYQCEAEFKYCPVHNQEQENNLPDAYEAIYYDENGEVNLH
ECCCHHHHHHHHHHHCCCCEEEEEECCEEECCCCCCCCCCCCCCHHHEEEECCCCCEEHH
QVVEDELIVTLPQIAKHAIEECQQSKFELTFGEVDEEKQRPNPFDALAQLKHK
HHHHHHHHEEHHHHHHHHHHHHHHCCEEEECCCCCHHHCCCCHHHHHHHHCCC
>Mature Secondary Structure
MQNVKLPIMVDPVRAAQNQLELDAIIPKALLSRLAESTISIQSDIKTAFSFDIDKQKLRI
CCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEE
FNGKASVAVELICQRCNEPMIYQCEAEFKYCPVHNQEQENNLPDAYEAIYYDENGEVNLH
ECCCHHHHHHHHHHHCCCCEEEEEECCEEECCCCCCCCCCCCCCHHHEEEECCCCCEEHH
QVVEDELIVTLPQIAKHAIEECQQSKFELTFGEVDEEKQRPNPFDALAQLKHK
HHHHHHHHEEHHHHHHHHHHHHHHCCEEEECCCCCHHHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]