| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is 119944704
Identifier: 119944704
GI number: 119944704
Start: 1176694
End: 1177422
Strand: Reverse
Name: 119944704
Synonym: Ping_0943
Alternate gene names: NA
Gene position: 1177422-1176694 (Counterclockwise)
Preceding gene: 119944705
Following gene: 119944703
Centisome position: 25.82
GC content: 41.15
Gene sequence:
>729_bases ATGACAAAAATTAACTTACTTAATGACGCTATCTCTTTAATACAAAAAACCTTGTGGCTTTCTATCTGCTTAAGTATGAC GGTTAGTACAGCATCAGCGTCCATCGACTGGCCAACGGCTGGGTGGCCAGTCAAAAAACTAACCCCGGCAGACGATCTAA GTTATTTAAGCGTATTAGAGAAAAATATAATTTTACACCTTAATATGGCAAGAACAGATCCGAGTCGCTATAGCCAAGAA TTTATAGCTCCGCGCAGCGCTTTTTACAATAATAAAATGTACTTAAAGCCAGGTGGAGCTGAAAATTTTATCGGACTGAA AACACAAGAGGGTCTAAGCGCGGCTGATGAAGCAGCTAAAGTAATGAGCAGCACAAAAGCTTTAGGGTCATTAAAAGCAC ATAAAAAATTAACCTTAGCGGCCCAAGATCATGCCGCTGACCAATCTAAATATGGCGGTATTGGACACGTTAGCCATAAT GGCTCAACCCTGCAAAATAGAATTGAAAGATATGGAAAATGGCAGCATACAATAGGTGAAAATATTATCTATGGCCCAGA TTCTGGACGAGAAGTCGTGGTTCAATTATTGATAGATGATGGTGTTAAAAGTCGCGGTCATCGCACTAATATACTGAAAA ATGATTATAAGGTAGTGGGCGTCGCCTGCGACAAACATCCTTCCTACGGCATTGTGTGCGTGATGGACTTTGCAGGTGGG ATCGAGTGA
Upstream 100 bases:
>100_bases CGATTCTACTAATGCAAAACAACCTTATTTAACGAGATTTCCCCAGAACTTTTAATCGCTTAATAAAATAACTCAGGCAA GAGATTTAAGGAAAATATTT
Downstream 100 bases:
>100_bases ATCGTTATCTGCATGACTTATATCCCAAAATATATTACAGAGACGCTAAGTATTTTGGCTTTAGTGTCTTTTTAACAATG TATCTATATCAACGATCTCT
Product: Allergen V5/Tpx-1 family protein
Products: NA
Alternate protein names: Allergen V5/Tpx-1 Family Protein; SCP-Like Extracellular Protein; Allergen V5/TPX-1 Family Protein; Allergen V5/Tpx-1 Related Protein; Allergen V5/Tpx-1 ; Lipoprotein
Number of amino acids: Translated: 242; Mature: 241
Protein sequence:
>242_residues MTKINLLNDAISLIQKTLWLSICLSMTVSTASASIDWPTAGWPVKKLTPADDLSYLSVLEKNIILHLNMARTDPSRYSQE FIAPRSAFYNNKMYLKPGGAENFIGLKTQEGLSAADEAAKVMSSTKALGSLKAHKKLTLAAQDHAADQSKYGGIGHVSHN GSTLQNRIERYGKWQHTIGENIIYGPDSGREVVVQLLIDDGVKSRGHRTNILKNDYKVVGVACDKHPSYGIVCVMDFAGG IE
Sequences:
>Translated_242_residues MTKINLLNDAISLIQKTLWLSICLSMTVSTASASIDWPTAGWPVKKLTPADDLSYLSVLEKNIILHLNMARTDPSRYSQE FIAPRSAFYNNKMYLKPGGAENFIGLKTQEGLSAADEAAKVMSSTKALGSLKAHKKLTLAAQDHAADQSKYGGIGHVSHN GSTLQNRIERYGKWQHTIGENIIYGPDSGREVVVQLLIDDGVKSRGHRTNILKNDYKVVGVACDKHPSYGIVCVMDFAGG IE >Mature_241_residues TKINLLNDAISLIQKTLWLSICLSMTVSTASASIDWPTAGWPVKKLTPADDLSYLSVLEKNIILHLNMARTDPSRYSQEF IAPRSAFYNNKMYLKPGGAENFIGLKTQEGLSAADEAAKVMSSTKALGSLKAHKKLTLAAQDHAADQSKYGGIGHVSHNG STLQNRIERYGKWQHTIGENIIYGPDSGREVVVQLLIDDGVKSRGHRTNILKNDYKVVGVACDKHPSYGIVCVMDFAGGI E
Specific function: Unknown
COG id: COG2340
COG function: function code S; Uncharacterized protein with SCP/PR1 domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26448; Mature: 26316
Theoretical pI: Translated: 9.02; Mature: 9.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKINLLNDAISLIQKTLWLSICLSMTVSTASASIDWPTAGWPVKKLTPADDLSYLSVLE CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH KNIILHLNMARTDPSRYSQEFIAPRSAFYNNKMYLKPGGAENFIGLKTQEGLSAADEAAK CCEEEEEEECCCCHHHHHHHHHCCHHHHHCCEEEECCCCCCCEEECCCCCCCCHHHHHHH VMSSTKALGSLKAHKKLTLAAQDHAADQSKYGGIGHVSHNGSTLQNRIERYGKWQHTIGE HHHHHHHHHHHHHHHEEEEEECHHCCCHHHCCCEEEECCCCHHHHHHHHHHCCHHHHHCC NIIYGPDSGREVVVQLLIDDGVKSRGHRTNILKNDYKVVGVACDKHPSYGIVCVMDFAGG CEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCC IE CC >Mature Secondary Structure TKINLLNDAISLIQKTLWLSICLSMTVSTASASIDWPTAGWPVKKLTPADDLSYLSVLE CEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH KNIILHLNMARTDPSRYSQEFIAPRSAFYNNKMYLKPGGAENFIGLKTQEGLSAADEAAK CCEEEEEEECCCCHHHHHHHHHCCHHHHHCCEEEECCCCCCCEEECCCCCCCCHHHHHHH VMSSTKALGSLKAHKKLTLAAQDHAADQSKYGGIGHVSHNGSTLQNRIERYGKWQHTIGE HHHHHHHHHHHHHHHEEEEEECHHCCCHHHCCCEEEECCCCHHHHHHHHHHCCHHHHHCC NIIYGPDSGREVVVQLLIDDGVKSRGHRTNILKNDYKVVGVACDKHPSYGIVCVMDFAGG CEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCC IE CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA