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The map label for this gene is 119944649

Identifier: 119944649

GI number: 119944649

Start: 1113574

End: 1114134

Strand: Reverse

Name: 119944649

Synonym: Ping_0888

Alternate gene names: NA

Gene position: 1114134-1113574 (Counterclockwise)

Preceding gene: 119944655

Following gene: 119944648

Centisome position: 24.43

GC content: 36.19

Gene sequence:

>561_bases
ATGCGCTCTCTTATTATCGAAACGTCATTGATAATATTACTGACTCTTATACTTTATTTGTTTGAGCCGGAAGCCAGTGA
ACTACTGGCATATTACCATAATGGCATAGCAGAAGGAGAAATTTGGAGACTGATTAGTGCCACATTTTGCCATACTAATT
TTAATCATCTGGTATTAAATATCGTGGGCTTAGTGATCACTTTGGCATTATTTGTTGATCTTTTTAAGACCATTAAAATT
TTCCCAATCATTATTTTCTGCAGTTTATTTATCGGGTTATGCCTGTTTTTCTTTGATACTGAGGTTATTTGGTATGTGGG
CTTATCGGGTGTTTTACACGGTTTATTTAGCTACGGGGTTGTCACCGATATTGCGAAGAAAGATCCCTGGGGTTATCTGC
TGGGAGCAGGTCTGGTTATTAAGATTATTTATGAGCAAATGTTTGGCGCATCGCAAAGTACGATCAATTTAATTGCGGCA
GAAGTATTAGTTAATGCGCATCTTTACGGCGCTATCGCGGGTTTTATTTTTTTTGCATATAAAAAAAAGATTGATAAATA
A

Upstream 100 bases:

>100_bases
AACTGGATCGCTGAGCAGATACAGGCAGATTGGGCTTTTAAGCAGCGTTTGCAAACAGCTCTTTTACTCATTTATAAAAA
TCTCTTAATAAAGGAAACCG

Downstream 100 bases:

>100_bases
TAAAGCATCAGACTTATCTAATGGCCTTCTGGGAAAAGTATTATAATTTATTAATTAAAATATACCATTCTGATTTTATT
CTCTGCACTGAAGACAGTAA

Product: rhomboid family protein

Products: NA

Alternate protein names: Integral Membrane Protein; Rhomboid Protein; Peptidase; Rhomboid Family Membrane Protein; Peptidase Rhomboid Family; Rhomboid-Like Protein; Rhomboid Family Integral Membrane Protein

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MRSLIIETSLIILLTLILYLFEPEASELLAYYHNGIAEGEIWRLISATFCHTNFNHLVLNIVGLVITLALFVDLFKTIKI
FPIIIFCSLFIGLCLFFFDTEVIWYVGLSGVLHGLFSYGVVTDIAKKDPWGYLLGAGLVIKIIYEQMFGASQSTINLIAA
EVLVNAHLYGAIAGFIFFAYKKKIDK

Sequences:

>Translated_186_residues
MRSLIIETSLIILLTLILYLFEPEASELLAYYHNGIAEGEIWRLISATFCHTNFNHLVLNIVGLVITLALFVDLFKTIKI
FPIIIFCSLFIGLCLFFFDTEVIWYVGLSGVLHGLFSYGVVTDIAKKDPWGYLLGAGLVIKIIYEQMFGASQSTINLIAA
EVLVNAHLYGAIAGFIFFAYKKKIDK
>Mature_186_residues
MRSLIIETSLIILLTLILYLFEPEASELLAYYHNGIAEGEIWRLISATFCHTNFNHLVLNIVGLVITLALFVDLFKTIKI
FPIIIFCSLFIGLCLFFFDTEVIWYVGLSGVLHGLFSYGVVTDIAKKDPWGYLLGAGLVIKIIYEQMFGASQSTINLIAA
EVLVNAHLYGAIAGFIFFAYKKKIDK

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20881; Mature: 20881

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSLIIETSLIILLTLILYLFEPEASELLAYYHNGIAEGEIWRLISATFCHTNFNHLVLN
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHH
IVGLVITLALFVDLFKTIKIFPIIIFCSLFIGLCLFFFDTEVIWYVGLSGVLHGLFSYGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTDIAKKDPWGYLLGAGLVIKIIYEQMFGASQSTINLIAAEVLVNAHLYGAIAGFIFFAY
HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKKIDK
HHHCCC
>Mature Secondary Structure
MRSLIIETSLIILLTLILYLFEPEASELLAYYHNGIAEGEIWRLISATFCHTNFNHLVLN
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHH
IVGLVITLALFVDLFKTIKIFPIIIFCSLFIGLCLFFFDTEVIWYVGLSGVLHGLFSYGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTDIAKKDPWGYLLGAGLVIKIIYEQMFGASQSTINLIAAEVLVNAHLYGAIAGFIFFAY
HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKKIDK
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA