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The map label for this gene is ybfE [H]

Identifier: 119944636

GI number: 119944636

Start: 1095364

End: 1095633

Strand: Reverse

Name: ybfE [H]

Synonym: Ping_0875

Alternate gene names: 119944636

Gene position: 1095633-1095364 (Counterclockwise)

Preceding gene: 119944637

Following gene: 119944635

Centisome position: 24.03

GC content: 36.67

Gene sequence:

>270_bases
ATGGCAAAAGAATCATTTGATCGCATAACACACGATCTTTTTGCTGATGAGGTGCGTCCAGGCAGACCGAAGAGCAATCC
GCATTGTCGTCAAGTTCAGCTTAAAATGAATAAAAAGAAGCAGGTACTACGGGACAAGCAGAAAGGTTTAAAACGTATTG
AGTTAAAAGTGGATAGTGAATTATTTGAAAAACTAAATCAGCTATCAAAAGATCAAGAAATTACCCGTGGAGAGTTAATT
AAGCAGTTACTTCACGAGCAATTAATTTAA

Upstream 100 bases:

>100_bases
GGCTAGCCATAACAAAACATACTAATACGCTGAACTAATGGTTTATTATCTATCTATGAGTTCAATCTATTAGCAGAAAA
TAGCAGTTTTAGGTAAAATA

Downstream 100 bases:

>100_bases
TTTATAAATAAAGGTAATCGACTATGGCTAGCGTGGGTATTTTTTTTGGTAGTGACACGGGCAACACTGAAGCTGTTGCT
AAAATGATCCAGAAAGAGTT

Product: LexA regulated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MAKESFDRITHDLFADEVRPGRPKSNPHCRQVQLKMNKKKQVLRDKQKGLKRIELKVDSELFEKLNQLSKDQEITRGELI
KQLLHEQLI

Sequences:

>Translated_89_residues
MAKESFDRITHDLFADEVRPGRPKSNPHCRQVQLKMNKKKQVLRDKQKGLKRIELKVDSELFEKLNQLSKDQEITRGELI
KQLLHEQLI
>Mature_88_residues
AKESFDRITHDLFADEVRPGRPKSNPHCRQVQLKMNKKKQVLRDKQKGLKRIELKVDSELFEKLNQLSKDQEITRGELIK
QLLHEQLI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081770, Length=88, Percent_Identity=54.5454545454545, Blast_Score=100, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002145 [H]

Pfam domain/function: PF01402 RHH_1 [H]

EC number: NA

Molecular weight: Translated: 10562; Mature: 10431

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKESFDRITHDLFADEVRPGRPKSNPHCRQVQLKMNKKKQVLRDKQKGLKRIELKVDSE
CCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
LFEKLNQLSKDQEITRGELIKQLLHEQLI
HHHHHHHHHCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKESFDRITHDLFADEVRPGRPKSNPHCRQVQLKMNKKKQVLRDKQKGLKRIELKVDSE
CHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
LFEKLNQLSKDQEITRGELIKQLLHEQLI
HHHHHHHHHCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]