Definition | Psychromonas ingrahamii 37, complete genome. |
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Accession | NC_008709 |
Length | 4,559,598 |
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The map label for this gene is mpl [H]
Identifier: 119944588
GI number: 119944588
Start: 1030900
End: 1032258
Strand: Direct
Name: mpl [H]
Synonym: Ping_0826
Alternate gene names: 119944588
Gene position: 1030900-1032258 (Clockwise)
Preceding gene: 119944587
Following gene: 119944589
Centisome position: 22.61
GC content: 40.03
Gene sequence:
>1359_bases ATGCATATTCATATTCTTGGCATCTGTGGCACATTTATGGGGGGCCTTGCTATTCTCGCCAAATCCTTGGGTTATAAAGT CACAGGATCAGATAAAAACGTTTATCCTCCGATGAGTACCCAATTAGAAGAGCAAGGGATTGAATTAATTCAAGGTTTTG ATCCAGACCAATTAGATTCAAATCCTGATCTTGTGGTTATTGGGAATGCAATGAGTCGTGGGAATCCTTGTGTAGAAGCT GTTCTGGATAAACAAATTCCTTATATTTCGGGTCCACAGTGGTTATTAGAGCATGTCTTAAAAGATCGTTGGGTATTAGC TGTTGCCGGGACACACGGTAAAACGTCCACTGCAAGCATGTTGGCTTGGATTTTAGAATATGCCAATATGAAACCGGGTT TCTTAATTGGTGGTGTACCGGAGAACTTTGGTCTGTCAGCCAGGTTAGGTGAAACCCCATTTTTTGTGATAGAGGCAGAT GAGTATGACAGTGCTTTTTTTGATAAACGTTCCAAATTTGTTCACTATCACCCTCGAACGCTGGTTTTAAATAACTTAGA GTTTGACCATGCAGATATTTTTGAAGATTTAAATGCCATTAAAAAACAATTTCATCATTTAGTTCGTACTGTTCCTGCAA CAGGGCGTATTTTTATACCCGATCAGGATCAAGCTCTGATCGATGTCCAGCGCATGGGCTGTTGGAGTGAAGTTGAATAT CTGGGGAAAAACTGGTCTTGCAAAAAAATCAAAGAAGATGCTTCAATTTTTGACGTCTATCTAAATCAGCAAAAACAGGG GCAGGTGGCTTGGTCATTGATGGGTGACCATAATGTGAATAATGCACTTGCTGCCATAGCTGCTGCGCGCCACGTTGGTG TTACGCCGGAAATTGCGATTGAAGCACTCGCTGAATTTAAAAATATCAAACGTCGAATGGAAGTTAAAGGCAAAGTTAAT AGTATTACTGTTTATGATGATTTTGCTCATCATCCTACCGCCATTAAAACAACCTTAGCGGGGTTACGTGCAAAAGTAGG CAATGAAAAAATTATTGCTGTTCTGGAGCCGCGTTCTAATACGATGAAATTAGGTGTCCATAAAGAGGCATTAGTCAATG CATTAGCCGCCGCTGACAGTGTTTACTGTTTTGAAACAGAAGATATTAAATGGTCAATTGAAGAACTGTTTGCAGAGCAA GGTAAAGCCGTTGATATATCCCATGATATTGATGAGTTATGCACTAAGTTAGTATCAATAGCAGAGCGAAACGCTCATAT ACTCATTATGAGTAATGGTGGTTTTGGTAATATCCATAACAAGTTACTGGGGCAACTCGCCCTGAAAAAGAAGGTTTAA
Upstream 100 bases:
>100_bases ATCAGGTAATTTAGGGTTAACAATTAAAGACACTTTCTTACCTTTCATGTTCAGGTGATTTTGGGTATAACAATTAAATA CACTTTCCTATTGAGGTTTT
Downstream 100 bases:
>100_bases TATGTCTAAAGATGTTTTTTTTAAAGATAGGATTACGTTAGCGGTAACAGGTGCATCGGGTAGCGGTTACTTCTTAAGGC TATTACAGGCATTGGTTAAT
Product: UDP-N-acetylmuramate
Products: NA
Alternate protein names: Murein peptide ligase [H]
Number of amino acids: Translated: 452; Mature: 452
Protein sequence:
>452_residues MHIHILGICGTFMGGLAILAKSLGYKVTGSDKNVYPPMSTQLEEQGIELIQGFDPDQLDSNPDLVVIGNAMSRGNPCVEA VLDKQIPYISGPQWLLEHVLKDRWVLAVAGTHGKTSTASMLAWILEYANMKPGFLIGGVPENFGLSARLGETPFFVIEAD EYDSAFFDKRSKFVHYHPRTLVLNNLEFDHADIFEDLNAIKKQFHHLVRTVPATGRIFIPDQDQALIDVQRMGCWSEVEY LGKNWSCKKIKEDASIFDVYLNQQKQGQVAWSLMGDHNVNNALAAIAAARHVGVTPEIAIEALAEFKNIKRRMEVKGKVN SITVYDDFAHHPTAIKTTLAGLRAKVGNEKIIAVLEPRSNTMKLGVHKEALVNALAAADSVYCFETEDIKWSIEELFAEQ GKAVDISHDIDELCTKLVSIAERNAHILIMSNGGFGNIHNKLLGQLALKKKV
Sequences:
>Translated_452_residues MHIHILGICGTFMGGLAILAKSLGYKVTGSDKNVYPPMSTQLEEQGIELIQGFDPDQLDSNPDLVVIGNAMSRGNPCVEA VLDKQIPYISGPQWLLEHVLKDRWVLAVAGTHGKTSTASMLAWILEYANMKPGFLIGGVPENFGLSARLGETPFFVIEAD EYDSAFFDKRSKFVHYHPRTLVLNNLEFDHADIFEDLNAIKKQFHHLVRTVPATGRIFIPDQDQALIDVQRMGCWSEVEY LGKNWSCKKIKEDASIFDVYLNQQKQGQVAWSLMGDHNVNNALAAIAAARHVGVTPEIAIEALAEFKNIKRRMEVKGKVN SITVYDDFAHHPTAIKTTLAGLRAKVGNEKIIAVLEPRSNTMKLGVHKEALVNALAAADSVYCFETEDIKWSIEELFAEQ GKAVDISHDIDELCTKLVSIAERNAHILIMSNGGFGNIHNKLLGQLALKKKV >Mature_452_residues MHIHILGICGTFMGGLAILAKSLGYKVTGSDKNVYPPMSTQLEEQGIELIQGFDPDQLDSNPDLVVIGNAMSRGNPCVEA VLDKQIPYISGPQWLLEHVLKDRWVLAVAGTHGKTSTASMLAWILEYANMKPGFLIGGVPENFGLSARLGETPFFVIEAD EYDSAFFDKRSKFVHYHPRTLVLNNLEFDHADIFEDLNAIKKQFHHLVRTVPATGRIFIPDQDQALIDVQRMGCWSEVEY LGKNWSCKKIKEDASIFDVYLNQQKQGQVAWSLMGDHNVNNALAAIAAARHVGVTPEIAIEALAEFKNIKRRMEVKGKVN SITVYDDFAHHPTAIKTTLAGLRAKVGNEKIIAVLEPRSNTMKLGVHKEALVNALAAADSVYCFETEDIKWSIEELFAEQ GKAVDISHDIDELCTKLVSIAERNAHILIMSNGGFGNIHNKLLGQLALKKKV
Specific function: Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N-acetylmuramic acid [H]
COG id: COG0773
COG function: function code M; UDP-N-acetylmuramate-alanine ligase
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MurCDEF family [H]
Homologues:
Organism=Escherichia coli, GI1790680, Length=454, Percent_Identity=63.4361233480176, Blast_Score=590, Evalue=1e-170, Organism=Escherichia coli, GI1786279, Length=408, Percent_Identity=28.1862745098039, Blast_Score=124, Evalue=1e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR005757 - InterPro: IPR016040 [H]
Pfam domain/function: PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M [H]
EC number: 6.3.2.- [C]
Molecular weight: Translated: 50098; Mature: 50098
Theoretical pI: Translated: 6.46; Mature: 6.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHIHILGICGTFMGGLAILAKSLGYKVTGSDKNVYPPMSTQLEEQGIELIQGFDPDQLDS CEEEEEEHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC NPDLVVIGNAMSRGNPCVEAVLDKQIPYISGPQWLLEHVLKDRWVLAVAGTHGKTSTASM CCCEEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHH LAWILEYANMKPGFLIGGVPENFGLSARLGETPFFVIEADEYDSAFFDKRSKFVHYHPRT HHHHHHHHCCCCCEEECCCCCCCCCCEECCCCCEEEEECCCCCHHHHHCCCCEEEECCCE LVLNNLEFDHADIFEDLNAIKKQFHHLVRTVPATGRIFIPDQDQALIDVQRMGCWSEVEY EEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHCCCHHHHHH LGKNWSCKKIKEDASIFDVYLNQQKQGQVAWSLMGDHNVNNALAAIAAARHVGVTPEIAI HCCCCCHHHHHCCHHHEEHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHH EALAEFKNIKRRMEVKGKVNSITVYDDFAHHPTAIKTTLAGLRAKVGNEKIIAVLEPRSN HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC TMKLGVHKEALVNALAAADSVYCFETEDIKWSIEELFAEQGKAVDISHDIDELCTKLVSI EEEECCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCEEECCCCHHHHHHHHHHH AERNAHILIMSNGGFGNIHNKLLGQLALKKKV HCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MHIHILGICGTFMGGLAILAKSLGYKVTGSDKNVYPPMSTQLEEQGIELIQGFDPDQLDS CEEEEEEHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC NPDLVVIGNAMSRGNPCVEAVLDKQIPYISGPQWLLEHVLKDRWVLAVAGTHGKTSTASM CCCEEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHH LAWILEYANMKPGFLIGGVPENFGLSARLGETPFFVIEADEYDSAFFDKRSKFVHYHPRT HHHHHHHHCCCCCEEECCCCCCCCCCEECCCCCEEEEECCCCCHHHHHCCCCEEEECCCE LVLNNLEFDHADIFEDLNAIKKQFHHLVRTVPATGRIFIPDQDQALIDVQRMGCWSEVEY EEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHCCCHHHHHH LGKNWSCKKIKEDASIFDVYLNQQKQGQVAWSLMGDHNVNNALAAIAAARHVGVTPEIAI HCCCCCHHHHHCCHHHEEHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHH EALAEFKNIKRRMEVKGKVNSITVYDDFAHHPTAIKTTLAGLRAKVGNEKIIAVLEPRSN HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC TMKLGVHKEALVNALAAADSVYCFETEDIKWSIEELFAEQGKAVDISHDIDELCTKLVSI EEEECCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCEEECCCCHHHHHHHHHHH AERNAHILIMSNGGFGNIHNKLLGQLALKKKV HCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503; 2843822; 7984428; 8808921 [H]