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The map label for this gene is kpsD [H]

Identifier: 119944530

GI number: 119944530

Start: 959792

End: 962350

Strand: Direct

Name: kpsD [H]

Synonym: Ping_0763

Alternate gene names: 119944530

Gene position: 959792-962350 (Clockwise)

Preceding gene: 119944529

Following gene: 119944531

Centisome position: 21.05

GC content: 41.07

Gene sequence:

>2559_bases
ATGTTTAATTTATGTCTATTATTTTCAGCTTTAATGCTGCTTGTTGGGTCTTTTAATGCGCTGGCTGCTACGCCAACGTC
TGCGCAGATTCAACAGTTTAAAGCACTGCCAAGCGCGCAACAAAATGCACTGGCCTCGCAATACGGCGTCAATATAGATG
CTGTCACCGCGCCTCCTGCTGAAAATAGCGCAACGCCAGATGCAGAGCCGACAATAGAAGATCGTACAACAGAAGATCCT
ACAACAACGGCCCAAAAAACACCAAGGGGTTTGAAGATGTTTGGTTATGATCTGTTTGCCGGCGAACCCATGTCATTGGC
ACCCTTAAGCGATCTTCCTGTCCCGAATGATTATTTGTTGGGGGTTGGCGATGAGCTGCAAATCAAAGTGTTTGGTACAA
AGACAGAAAGCTACAATTTAGTGATTAACCGCGAAGGCTCTATCCATATTCCAGACTTGGGACCTTTTCAGGCCAGGGGC
TTAACTTATCAGCAGCTTAAAACAGAATTTACAGCGTTAATAAACCGCCGCATGATTGGTGTCGAAACCAGTATCAGCTT
AGGTAAATTAAAAACAATGGAAGTTTTTGTGTTGGGGGCGGCTTATAAACCTGGCAGTTACGTCATTAGCTCATTATCTT
CGGTCACTCAGGCAATAAAAGCTGCTGGCGGTATAGAGAGATTAGGCTCTTTACGTGAGATCCAGGTAAAGCGTAATAAT
AAAATCATCAAAAAAATCGATCTCTATGATCTGTTAATTTCGGGTGATACATCCTCAGATATTTCACTCAAACAAGGTGA
TGTTGTTTTTATCCCAATCAAAAAGAAAACCGTCAGTATTGATGGTTTTGTAAAACGGCCGGCGATTTATGAATTAAAAA
ATGAAAAAGATATTGATAGCATCCTTAAACTTGCGGGCGGTTTAAACGCAAAAGCATACCCTGGCGTGCAAGTAACAAGA
AGAACTCAAATTGGCCGAGATTTATATAATTTCAACTTGGAAGATAAGCAGAGTAGTCAAACATTTATAGTCGAAAATGG
CGATCAGTTGAATGTTGGTGGCGTGACTGATCTTTACCATAATGCGGTCAGTGTTTCTGGTGCTGTTAGTTATGAAGGAG
CCTATCAGTGGAATGCAGACTTAACCGTCAGTGATTTAATTACATCAATCAAATTCGATTTGAATAAAGATGCTGATTTA
CACAACGCGTTACTGGTGCGAGAAGTGGGTCTTGAGCATAATATTAAAGTGCTGTATTTTGATCTGCTGGCTGCCATATC
TAACCCTAAAAGTGACTTAGATCTGAAGTTACAGGCGCAAGATCAGCTCCTAATTTTAAATAAAGAGACCGGAATTGCTG
AAAAACTGGGTAAGAAAAGTAATTTATCCAAACAGATTGATAATCAAGAGGTTAATGATCAATTCGTCATCTCGGATTTA
GGTGATAAATCAAAACAGCAGAGCAGTGCACAAGCCTTTAGAGCGGACCTGCTAAAACCTGTCATTGCGCAGTTAAAAGC
GCAGTCTAATTTTGAAAATGCAGTGCAAATTGTTGATATTCGTGGCGCAGTTAAGTTCCCCGGTGTTTACCCCTTATTTG
AACATGCCGATTTAAAAACGCTGATCAATCTCGCTGGCGGTTTAAAAGAGGCATCGTATTTGACGGCCGGTGAATTAAGC
CGTATTAAGTTGATTGACGGTAAAGAGCGTATTCATTATCAAACAATTGATATTGCCAGTGCGATGAAAGACACTAAAAA
TGGAAATATTAAGCTTAAAAGTAAAGATAGAGTGCATGTCTTTACTAAGCCCGAATGGCGGGAAGATTACAAAGCAACTT
TGTCGGGCGAAGTGCGGTTTCCGGGGACTTACCGCTTTAATCGTGGTGAAACATTATATGATGTGATTCAACGAGCAGGC
GGTCTGACTGAATACGCTTATCCAGAAGGTGCTGTATTTGCGAGAGAAAGCCTGCGTAAAATAGAAGAAAAACAACTCGC
ATTTTTACATAGGCGCTTAAAAGAAGAAGTCAGTTCGTTAGCATTTCGCCGCCAGTCCAGCAGCAATCCAGTACAAAGTA
ATAATACCCAGAGTGCGATGGATACCGTTGAGAAGCTTGGAGTCGCTGAAGCCGTTGGCCGTATGTCCATTAATCTTAAA
AAAATGCTGCAGCACGACGAAGCACAAAATATTAATTTAGAGAATCAGGATTTTTTACATATTCCACCATTACGTAAAGT
AATATCAGTCATTGGACATGTACAGTTTCCAACGGCTCATATTTTTGAAGAAAATAAAAGCGTTGATGCCTACTTAGCGC
TATCGGGTGGTGCTAAAAAACAAGCAGATACAGACCGAGTTTATGTTATCCGTGCAAACGGCAGTGTCTTTATTCCCAAT
CAGTCATTCTGGTTTAGCCGTGAAGAACAGCAGTTAATGCCGGGTGATACTATTGTCATGCCGATGGATACTGATTACAT
GGATAGATTGTCAACCCTTACCTCATCAACACAGATAATGTACCAGTTAGGTGTAGCTTGGAGCGCGATAAGTAATTAG

Upstream 100 bases:

>100_bases
TCGTGGGAATTGCATTTTTAATTGGACGGACTTGTTTAAGAGTTTATTTTTTGGGCCAAAGTGGCTTTAATTTTTTTTAC
ATATAGGTAACGAGTGAAAA

Downstream 100 bases:

>100_bases
TGAAAAACAACTGTGATCCGGTAGCGTATATAACCGTCATCCCAGCATTGCTTTGGCCGGGAGCTCGACGAATAAGTTAA
GCACATCGAAAGCTTAAACA

Product: polysaccharide export protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 852; Mature: 852

Protein sequence:

>852_residues
MFNLCLLFSALMLLVGSFNALAATPTSAQIQQFKALPSAQQNALASQYGVNIDAVTAPPAENSATPDAEPTIEDRTTEDP
TTTAQKTPRGLKMFGYDLFAGEPMSLAPLSDLPVPNDYLLGVGDELQIKVFGTKTESYNLVINREGSIHIPDLGPFQARG
LTYQQLKTEFTALINRRMIGVETSISLGKLKTMEVFVLGAAYKPGSYVISSLSSVTQAIKAAGGIERLGSLREIQVKRNN
KIIKKIDLYDLLISGDTSSDISLKQGDVVFIPIKKKTVSIDGFVKRPAIYELKNEKDIDSILKLAGGLNAKAYPGVQVTR
RTQIGRDLYNFNLEDKQSSQTFIVENGDQLNVGGVTDLYHNAVSVSGAVSYEGAYQWNADLTVSDLITSIKFDLNKDADL
HNALLVREVGLEHNIKVLYFDLLAAISNPKSDLDLKLQAQDQLLILNKETGIAEKLGKKSNLSKQIDNQEVNDQFVISDL
GDKSKQQSSAQAFRADLLKPVIAQLKAQSNFENAVQIVDIRGAVKFPGVYPLFEHADLKTLINLAGGLKEASYLTAGELS
RIKLIDGKERIHYQTIDIASAMKDTKNGNIKLKSKDRVHVFTKPEWREDYKATLSGEVRFPGTYRFNRGETLYDVIQRAG
GLTEYAYPEGAVFARESLRKIEEKQLAFLHRRLKEEVSSLAFRRQSSSNPVQSNNTQSAMDTVEKLGVAEAVGRMSINLK
KMLQHDEAQNINLENQDFLHIPPLRKVISVIGHVQFPTAHIFEENKSVDAYLALSGGAKKQADTDRVYVIRANGSVFIPN
QSFWFSREEQQLMPGDTIVMPMDTDYMDRLSTLTSSTQIMYQLGVAWSAISN

Sequences:

>Translated_852_residues
MFNLCLLFSALMLLVGSFNALAATPTSAQIQQFKALPSAQQNALASQYGVNIDAVTAPPAENSATPDAEPTIEDRTTEDP
TTTAQKTPRGLKMFGYDLFAGEPMSLAPLSDLPVPNDYLLGVGDELQIKVFGTKTESYNLVINREGSIHIPDLGPFQARG
LTYQQLKTEFTALINRRMIGVETSISLGKLKTMEVFVLGAAYKPGSYVISSLSSVTQAIKAAGGIERLGSLREIQVKRNN
KIIKKIDLYDLLISGDTSSDISLKQGDVVFIPIKKKTVSIDGFVKRPAIYELKNEKDIDSILKLAGGLNAKAYPGVQVTR
RTQIGRDLYNFNLEDKQSSQTFIVENGDQLNVGGVTDLYHNAVSVSGAVSYEGAYQWNADLTVSDLITSIKFDLNKDADL
HNALLVREVGLEHNIKVLYFDLLAAISNPKSDLDLKLQAQDQLLILNKETGIAEKLGKKSNLSKQIDNQEVNDQFVISDL
GDKSKQQSSAQAFRADLLKPVIAQLKAQSNFENAVQIVDIRGAVKFPGVYPLFEHADLKTLINLAGGLKEASYLTAGELS
RIKLIDGKERIHYQTIDIASAMKDTKNGNIKLKSKDRVHVFTKPEWREDYKATLSGEVRFPGTYRFNRGETLYDVIQRAG
GLTEYAYPEGAVFARESLRKIEEKQLAFLHRRLKEEVSSLAFRRQSSSNPVQSNNTQSAMDTVEKLGVAEAVGRMSINLK
KMLQHDEAQNINLENQDFLHIPPLRKVISVIGHVQFPTAHIFEENKSVDAYLALSGGAKKQADTDRVYVIRANGSVFIPN
QSFWFSREEQQLMPGDTIVMPMDTDYMDRLSTLTSSTQIMYQLGVAWSAISN
>Mature_852_residues
MFNLCLLFSALMLLVGSFNALAATPTSAQIQQFKALPSAQQNALASQYGVNIDAVTAPPAENSATPDAEPTIEDRTTEDP
TTTAQKTPRGLKMFGYDLFAGEPMSLAPLSDLPVPNDYLLGVGDELQIKVFGTKTESYNLVINREGSIHIPDLGPFQARG
LTYQQLKTEFTALINRRMIGVETSISLGKLKTMEVFVLGAAYKPGSYVISSLSSVTQAIKAAGGIERLGSLREIQVKRNN
KIIKKIDLYDLLISGDTSSDISLKQGDVVFIPIKKKTVSIDGFVKRPAIYELKNEKDIDSILKLAGGLNAKAYPGVQVTR
RTQIGRDLYNFNLEDKQSSQTFIVENGDQLNVGGVTDLYHNAVSVSGAVSYEGAYQWNADLTVSDLITSIKFDLNKDADL
HNALLVREVGLEHNIKVLYFDLLAAISNPKSDLDLKLQAQDQLLILNKETGIAEKLGKKSNLSKQIDNQEVNDQFVISDL
GDKSKQQSSAQAFRADLLKPVIAQLKAQSNFENAVQIVDIRGAVKFPGVYPLFEHADLKTLINLAGGLKEASYLTAGELS
RIKLIDGKERIHYQTIDIASAMKDTKNGNIKLKSKDRVHVFTKPEWREDYKATLSGEVRFPGTYRFNRGETLYDVIQRAG
GLTEYAYPEGAVFARESLRKIEEKQLAFLHRRLKEEVSSLAFRRQSSSNPVQSNNTQSAMDTVEKLGVAEAVGRMSINLK
KMLQHDEAQNINLENQDFLHIPPLRKVISVIGHVQFPTAHIFEENKSVDAYLALSGGAKKQADTDRVYVIRANGSVFIPN
QSFWFSREEQQLMPGDTIVMPMDTDYMDRLSTLTSSTQIMYQLGVAWSAISN

Specific function: Involved in the translocation of the polysialic acid capsule across the outer membrane to the cell surface. May function as the periplasmic binding element of the PSA transport system, in which it transiently interacts with the membrane component of the t

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli K5 kpsD [H]

Homologues:

Organism=Escherichia coli, GI1787218, Length=169, Percent_Identity=27.2189349112426, Blast_Score=70, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715 [H]

Pfam domain/function: PF02563 Poly_export [H]

EC number: NA

Molecular weight: Translated: 94240; Mature: 94240

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNLCLLFSALMLLVGSFNALAATPTSAQIQQFKALPSAQQNALASQYGVNIDAVTAPPA
CCHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCC
ENSATPDAEPTIEDRTTEDPTTTAQKTPRGLKMFGYDLFAGEPMSLAPLSDLPVPNDYLL
CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEECEEEECCCCCCCCCCCCCCCCCCEEE
GVGDELQIKVFGTKTESYNLVINREGSIHIPDLGPFQARGLTYQQLKTEFTALINRRMIG
ECCCEEEEEEEEECCCCEEEEEECCCCEECCCCCCHHHCCCCHHHHHHHHHHHHHCCEEE
VETSISLGKLKTMEVFVLGAAYKPGSYVISSLSSVTQAIKAAGGIERLGSLREIQVKRNN
EECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEEEECCC
KIIKKIDLYDLLISGDTSSDISLKQGDVVFIPIKKKTVSIDGFVKRPAIYELKNEKDIDS
CEEEEEEEEEEEEECCCCCCCEEECCCEEEEEECCEEEEECCEECCCEEEECCCCCCHHH
ILKLAGGLNAKAYPGVQVTRRTQIGRDLYNFNLEDKQSSQTFIVENGDQLNVGGVTDLYH
HHHHHCCCCCCCCCCCEEEHHHHHCCHHHCCCCCCCCCCCEEEEECCCEEECCCHHHHHH
NAVSVSGAVSYEGAYQWNADLTVSDLITSIKFDLNKDADLHNALLVREVGLEHNIKVLYF
HHEEECCEEEECCCEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEHHH
DLLAAISNPKSDLDLKLQAQDQLLILNKETGIAEKLGKKSNLSKQIDNQEVNDQFVISDL
HHHHHHCCCCCCCEEEEECCCEEEEEECCCCHHHHHCCCCCCHHHCCCCCCCCEEEEECC
GDKSKQQSSAQAFRADLLKPVIAQLKAQSNFENAVQIVDIRGAVKFPGVYPLFEHADLKT
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEECCCCCCCHHCCHHHH
LINLAGGLKEASYLTAGELSRIKLIDGKERIHYQTIDIASAMKDTKNGNIKLKSKDRVHV
HHHHHCCCCCCCEEECCCCCEEEEECCCCCEEEEEEHHHHHHHCCCCCCEEEECCCEEEE
FTKPEWREDYKATLSGEVRFPGTYRFNRGETLYDVIQRAGGLTEYAYPEGAVFARESLRK
EECCCHHHCHHHEECCCEECCCEEEECCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
IEEKQLAFLHRRLKEEVSSLAFRRQSSSNPVQSNNTQSAMDTVEKLGVAEAVGRMSINLK
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHH
KMLQHDEAQNINLENQDFLHIPPLRKVISVIGHVQFPTAHIFEENKSVDAYLALSGGAKK
HHHCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEEECCCCCC
QADTDRVYVIRANGSVFIPNQSFWFSREEQQLMPGDTIVMPMDTDYMDRLSTLTSSTQIM
CCCCCEEEEEEECCEEEECCCCCCCCCCHHHCCCCCEEEEECCCHHHHHHHHHHHHHHEE
YQLGVAWSAISN
HHHHHHHHHCCC
>Mature Secondary Structure
MFNLCLLFSALMLLVGSFNALAATPTSAQIQQFKALPSAQQNALASQYGVNIDAVTAPPA
CCHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCC
ENSATPDAEPTIEDRTTEDPTTTAQKTPRGLKMFGYDLFAGEPMSLAPLSDLPVPNDYLL
CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEECEEEECCCCCCCCCCCCCCCCCCEEE
GVGDELQIKVFGTKTESYNLVINREGSIHIPDLGPFQARGLTYQQLKTEFTALINRRMIG
ECCCEEEEEEEEECCCCEEEEEECCCCEECCCCCCHHHCCCCHHHHHHHHHHHHHCCEEE
VETSISLGKLKTMEVFVLGAAYKPGSYVISSLSSVTQAIKAAGGIERLGSLREIQVKRNN
EECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEEEECCC
KIIKKIDLYDLLISGDTSSDISLKQGDVVFIPIKKKTVSIDGFVKRPAIYELKNEKDIDS
CEEEEEEEEEEEEECCCCCCCEEECCCEEEEEECCEEEEECCEECCCEEEECCCCCCHHH
ILKLAGGLNAKAYPGVQVTRRTQIGRDLYNFNLEDKQSSQTFIVENGDQLNVGGVTDLYH
HHHHHCCCCCCCCCCCEEEHHHHHCCHHHCCCCCCCCCCCEEEEECCCEEECCCHHHHHH
NAVSVSGAVSYEGAYQWNADLTVSDLITSIKFDLNKDADLHNALLVREVGLEHNIKVLYF
HHEEECCEEEECCCEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEHHH
DLLAAISNPKSDLDLKLQAQDQLLILNKETGIAEKLGKKSNLSKQIDNQEVNDQFVISDL
HHHHHHCCCCCCCEEEEECCCEEEEEECCCCHHHHHCCCCCCHHHCCCCCCCCEEEEECC
GDKSKQQSSAQAFRADLLKPVIAQLKAQSNFENAVQIVDIRGAVKFPGVYPLFEHADLKT
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEECCCCCCCHHCCHHHH
LINLAGGLKEASYLTAGELSRIKLIDGKERIHYQTIDIASAMKDTKNGNIKLKSKDRVHV
HHHHHCCCCCCCEEECCCCCEEEEECCCCCEEEEEEHHHHHHHCCCCCCEEEECCCEEEE
FTKPEWREDYKATLSGEVRFPGTYRFNRGETLYDVIQRAGGLTEYAYPEGAVFARESLRK
EECCCHHHCHHHEECCCEECCCEEEECCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
IEEKQLAFLHRRLKEEVSSLAFRRQSSSNPVQSNNTQSAMDTVEKLGVAEAVGRMSINLK
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHH
KMLQHDEAQNINLENQDFLHIPPLRKVISVIGHVQFPTAHIFEENKSVDAYLALSGGAKK
HHHCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEEECCCCCC
QADTDRVYVIRANGSVFIPNQSFWFSREEQQLMPGDTIVMPMDTDYMDRLSTLTSSTQIM
CCCCCEEEEEEECCEEEECCCCCCCCCCHHHCCCCCEEEEECCCHHHHHHHHHHHHHHEE
YQLGVAWSAISN
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8021185 [H]