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The map label for this gene is rnfE [H]

Identifier: 119944504

GI number: 119944504

Start: 926772

End: 927464

Strand: Reverse

Name: rnfE [H]

Synonym: Ping_0733

Alternate gene names: 119944504

Gene position: 927464-926772 (Counterclockwise)

Preceding gene: 119944505

Following gene: 119944503

Centisome position: 20.34

GC content: 41.7

Gene sequence:

>693_bases
ATGAGTGAACAAAGCCAGGAAATCCCTGCAGACAAAGATAAGACAGATAGCGCAGATTCCGTTTATAGGAAATTAATGCG
TCAGGGTTTATGGGCAAATAATCCCGGTATTGTGCAGTTATTAGGGTTATGCCCTCTGCTGGCCGTCACAAATACAATAA
CCAATGCGCTGGGGCTTGGTTTGGCCACGCTCTTTGTGGTGGTCGCTTCAAATTCATTGATCTCATTAATCCGTCACCTT
GTACCACAAGCCATCCGGATCCCTATTTTTGTGATGATCATCGCCTCACTGGTCAGCTGTATTCAATTATTAATGAATGC
CTTTACCTATGAGCTTTATCTGTCTTTAGGTATTTTTATACCCTTGATCGTCACTAACTGTATGATTATTGGCCGTGCGG
AAGCTTTTGCGTCTAAAAATAGCATTAAACATTCCGCATTTGATGGTCTGATGATGGGGGTGGGTTTTGGCCTGGTATTA
ATCATTTTAGGCGCCAGCCGAGAAATATTAGCTCAAGGTACATTATTTGACGGAATAGAAACTATGTTAGGCGATTGGGC
TAAGATATTAACCATCACGATCTACCAGGCTGATACAAGTTTTTTACTTGCGGCACTGCCGCCGGGTGCTTTTATTATTA
TGGGATTAATCATTGCCATTAAAAATGCGATTGATCACCGGATTAAAGAATAA

Upstream 100 bases:

>100_bases
CGCCTCGCGCCGTTGTTTTTGCAGTAAAAGATGCGTTAATTTATTTTCAAAAAAACAAAAAAGCACTCTTCAAGCATAAA
GCAAATTGTGGAGAAAGTTT

Downstream 100 bases:

>100_bases
TGAACAGGTTTACATATCCCGAAATATTAATGCATTTATCGACTGAAAAGTAATGAGCGATATTAAACGTCGCAAAATAT
TAATGCATTTATGGGACTGA

Product: electron transport complex, RnfABCDGE type, E subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MSEQSQEIPADKDKTDSADSVYRKLMRQGLWANNPGIVQLLGLCPLLAVTNTITNALGLGLATLFVVVASNSLISLIRHL
VPQAIRIPIFVMIIASLVSCIQLLMNAFTYELYLSLGIFIPLIVTNCMIIGRAEAFASKNSIKHSAFDGLMMGVGFGLVL
IILGASREILAQGTLFDGIETMLGDWAKILTITIYQADTSFLLAALPPGAFIIMGLIIAIKNAIDHRIKE

Sequences:

>Translated_230_residues
MSEQSQEIPADKDKTDSADSVYRKLMRQGLWANNPGIVQLLGLCPLLAVTNTITNALGLGLATLFVVVASNSLISLIRHL
VPQAIRIPIFVMIIASLVSCIQLLMNAFTYELYLSLGIFIPLIVTNCMIIGRAEAFASKNSIKHSAFDGLMMGVGFGLVL
IILGASREILAQGTLFDGIETMLGDWAKILTITIYQADTSFLLAALPPGAFIIMGLIIAIKNAIDHRIKE
>Mature_229_residues
SEQSQEIPADKDKTDSADSVYRKLMRQGLWANNPGIVQLLGLCPLLAVTNTITNALGLGLATLFVVVASNSLISLIRHLV
PQAIRIPIFVMIIASLVSCIQLLMNAFTYELYLSLGIFIPLIVTNCMIIGRAEAFASKNSIKHSAFDGLMMGVGFGLVLI
ILGASREILAQGTLFDGIETMLGDWAKILTITIYQADTSFLLAALPPGAFIIMGLIIAIKNAIDHRIKE

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=211, Percent_Identity=57.8199052132701, Blast_Score=233, Evalue=7e-63,
Organism=Escherichia coli, GI1787914, Length=149, Percent_Identity=36.241610738255, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 24860; Mature: 24729

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQSQEIPADKDKTDSADSVYRKLMRQGLWANNPGIVQLLGLCPLLAVTNTITNALGLG
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LATLFVVVASNSLISLIRHLVPQAIRIPIFVMIIASLVSCIQLLMNAFTYELYLSLGIFI
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLIVTNCMIIGRAEAFASKNSIKHSAFDGLMMGVGFGLVLIILGASREILAQGTLFDGIE
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHH
TMLGDWAKILTITIYQADTSFLLAALPPGAFIIMGLIIAIKNAIDHRIKE
HHHHHHHHHHHHEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SEQSQEIPADKDKTDSADSVYRKLMRQGLWANNPGIVQLLGLCPLLAVTNTITNALGLG
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LATLFVVVASNSLISLIRHLVPQAIRIPIFVMIIASLVSCIQLLMNAFTYELYLSLGIFI
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLIVTNCMIIGRAEAFASKNSIKHSAFDGLMMGVGFGLVLIILGASREILAQGTLFDGIE
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHH
TMLGDWAKILTITIYQADTSFLLAALPPGAFIIMGLIIAIKNAIDHRIKE
HHHHHHHHHHHHEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA