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The map label for this gene is ompS2 [H]

Identifier: 119944438

GI number: 119944438

Start: 854481

End: 855455

Strand: Direct

Name: ompS2 [H]

Synonym: Ping_0666

Alternate gene names: 119944438

Gene position: 854481-855455 (Clockwise)

Preceding gene: 119944437

Following gene: 119944439

Centisome position: 18.74

GC content: 42.97

Gene sequence:

>975_bases
ATGAAAAAAACATTACTAGCAGTCGCAATCCCAGCACTTTTATTCGCCAACGCAAGTTCAGCGGTTGAATTATACAACGA
TGCAGCTAATACTTTTTCTATCGGCGGCCATGTTGCAATGGGTTTAGCTGGATCAGATGAAGGCGAAACTCAGGTAGCTT
CAGTATCACCGCGTATCAATTTTGAAGCTACTCGTGATTTAGGCGAAGGTTACACTATGTTTCTTCGCACTGAGTGGTCA
GTAAATACATTAGACGGCGGAGCAAACTCATTTTCCACACGTTTAGGTTACCTTGGGCTTAGCCATGCAGACAACGGTAC
TGCTATCATCGGTACACAATGGTCTCCATACTACAGTGTTGGTGGCGTTGCAGATTTACCTGTTGCATTCGCTAACGGAT
CTTTATACAGCGACCACTATAATCTTGGTACAGGACGTGCTGAAAGAATGGTCAGTTACAGCAATAAACTAGATTTAGGC
ACTGCAGGCGCGCTTAAATTAGGTCTAGGTTGGCAGGGTAAGCACGCTGCATATGATACTCGTGTGCAAGCGGCATTAAC
CTACTCAGTAATGGACGTAACTCTAGGTTATGCACACAACACCGGTGATGTTGCTGCAGACAAAGCTGTTTCAAATATTG
TTTCAGCAAAATATGGTTCTTACGGTAACGGATTATATGCAGCCGTTTCTTATGCTGACAACGAGTTTATGAACAATGCA
CTTGCTGAAACATCGCAGACAAGCGCGATTGCAGCTTACGCATTACCAAGCAGCGTAAACCTCAGTGTTAACTATGAAAC
TGTTGAAAATGATCTAACTAATAAGACATTAAATGAATCAACGGCATTCCAGGTAGAATACAAGCCGTTTAACAATGTTC
TGACTTATGTTGGTTACCAGGTTGATCTTGGTGACGACGATGCTACTACTGCAGATGATAACAAGTGGGCACTTGGTGCA
CGTTTATACCTATAA

Upstream 100 bases:

>100_bases
TAATAATGAGGCAGACTTTACTCAAGATTAGCGCCGAGCATACACTATTATGCTGTATTGCCTGCGCATTTAACCTAAAA
AAAAGATAAACAGGAAAACT

Downstream 100 bases:

>100_bases
GGTATAGTGTTGTCTAAAAAACCTCGGTTTTTAAACTAAGATAATATTGGAACGGTCTTGAATGCATCTATAAAGCATTT
AAGACCGTTTTTTTAATTTA

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MKKTLLAVAIPALLFANASSAVELYNDAANTFSIGGHVAMGLAGSDEGETQVASVSPRINFEATRDLGEGYTMFLRTEWS
VNTLDGGANSFSTRLGYLGLSHADNGTAIIGTQWSPYYSVGGVADLPVAFANGSLYSDHYNLGTGRAERMVSYSNKLDLG
TAGALKLGLGWQGKHAAYDTRVQAALTYSVMDVTLGYAHNTGDVAADKAVSNIVSAKYGSYGNGLYAAVSYADNEFMNNA
LAETSQTSAIAAYALPSSVNLSVNYETVENDLTNKTLNESTAFQVEYKPFNNVLTYVGYQVDLGDDDATTADDNKWALGA
RLYL

Sequences:

>Translated_324_residues
MKKTLLAVAIPALLFANASSAVELYNDAANTFSIGGHVAMGLAGSDEGETQVASVSPRINFEATRDLGEGYTMFLRTEWS
VNTLDGGANSFSTRLGYLGLSHADNGTAIIGTQWSPYYSVGGVADLPVAFANGSLYSDHYNLGTGRAERMVSYSNKLDLG
TAGALKLGLGWQGKHAAYDTRVQAALTYSVMDVTLGYAHNTGDVAADKAVSNIVSAKYGSYGNGLYAAVSYADNEFMNNA
LAETSQTSAIAAYALPSSVNLSVNYETVENDLTNKTLNESTAFQVEYKPFNNVLTYVGYQVDLGDDDATTADDNKWALGA
RLYL
>Mature_324_residues
MKKTLLAVAIPALLFANASSAVELYNDAANTFSIGGHVAMGLAGSDEGETQVASVSPRINFEATRDLGEGYTMFLRTEWS
VNTLDGGANSFSTRLGYLGLSHADNGTAIIGTQWSPYYSVGGVADLPVAFANGSLYSDHYNLGTGRAERMVSYSNKLDLG
TAGALKLGLGWQGKHAAYDTRVQAALTYSVMDVTLGYAHNTGDVAADKAVSNIVSAKYGSYGNGLYAAVSYADNEFMNNA
LAETSQTSAIAAYALPSSVNLSVNYETVENDLTNKTLNESTAFQVEYKPFNNVLTYVGYQVDLGDDDATTADDNKWALGA
RLYL

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 34397; Mature: 34397

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLLAVAIPALLFANASSAVELYNDAANTFSIGGHVAMGLAGSDEGETQVASVSPRIN
CCCHHHHHHHHHHHHCCCCCCEEEHHCCCCEEECCCEEEEEECCCCCCCEEEEEECCCCC
FEATRDLGEGYTMFLRTEWSVNTLDGGANSFSTRLGYLGLSHADNGTAIIGTQWSPYYSV
CHHHCCCCCCEEEEEEEECEEEECCCCCCCHHHHHHEEEEEECCCCCEEEECCCCCCCCC
GGVADLPVAFANGSLYSDHYNLGTGRAERMVSYSNKLDLGTAGALKLGLGWQGKHAAYDT
CCCCCCCEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCHHH
RVQAALTYSVMDVTLGYAHNTGDVAADKAVSNIVSAKYGSYGNGLYAAVSYADNEFMNNA
HEEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHH
LAETSQTSAIAAYALPSSVNLSVNYETVENDLTNKTLNESTAFQVEYKPFNNVLTYVGYQ
HHCCCCCCEEEEEECCCCEEEEEEHHHHCCCCCCCCCCCCEEEEEEECCHHCEEEHEEEE
VDLGDDDATTADDNKWALGARLYL
EEECCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MKKTLLAVAIPALLFANASSAVELYNDAANTFSIGGHVAMGLAGSDEGETQVASVSPRIN
CCCHHHHHHHHHHHHCCCCCCEEEHHCCCCEEECCCEEEEEECCCCCCCEEEEEECCCCC
FEATRDLGEGYTMFLRTEWSVNTLDGGANSFSTRLGYLGLSHADNGTAIIGTQWSPYYSV
CHHHCCCCCCEEEEEEEECEEEECCCCCCCHHHHHHEEEEEECCCCCEEEECCCCCCCCC
GGVADLPVAFANGSLYSDHYNLGTGRAERMVSYSNKLDLGTAGALKLGLGWQGKHAAYDT
CCCCCCCEEEECCCEEECCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCHHH
RVQAALTYSVMDVTLGYAHNTGDVAADKAVSNIVSAKYGSYGNGLYAAVSYADNEFMNNA
HEEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHH
LAETSQTSAIAAYALPSSVNLSVNYETVENDLTNKTLNESTAFQVEYKPFNNVLTYVGYQ
HHCCCCCCEEEEEECCCCEEEEEEHHHHCCCCCCCCCCCCEEEEEEECCHHCEEEHEEEE
VDLGDDDATTADDNKWALGARLYL
EEECCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]