Click here to switch to the map view.

The map label for this gene is yadE [C]

Identifier: 119944232

GI number: 119944232

Start: 577536

End: 578555

Strand: Direct

Name: yadE [C]

Synonym: Ping_0455

Alternate gene names: 119944232

Gene position: 577536-578555 (Clockwise)

Preceding gene: 119944231

Following gene: 119944233

Centisome position: 12.67

GC content: 36.76

Gene sequence:

>1020_bases
ATGAAACGTATTTTTAAAAAACTAATATTAAGCTGTCTAGATAAGTTAGGTTTTTTATATTTTTTGCACTATAAAAATCG
TCATAAAATTAGCGTGTTAATGTTGCATGGTGTGATGACTCCGCATGACAATACAATCTGGAATCCGCTAAGGCCGCAGC
TCTCTCCTGGTGAATTGCAGCGTGTACTTGGTATCTTATCTAGTTATTATCAATTTATCACTGTCAAGCAATGTATCGAC
ATGCTAGAAGGAAAAATCCCATTAATTGATAATGCATTACTCATTACCTTCGATGATGGTTATCGTAACAATATTGATTA
TGCCCTGCCTATTTGCGAGCAATTTGCTATTAAGCCAGTCCTATTTGTTACCACAGGCTACATAGATTCAGGCTTGCCTT
TTTGGTTTGACCGCTTAGATTATGCACTGCAACAGAATATGGGAGGGGTAATCTCATTTGAATACCAAGGAGCTAAGTAT
TGTTTTGATGCAACTTCTCGGCAAGCCTTAAAAACGAGTTACCAAGCATTCAGAGATCATTGTAAGCAAGTATTTACTGA
GGATATTGAAATGAATCAGTTATTTAATGCGTTATCTGAAATGCTTGAAATTCGTGCAGGGAAAGCACTACGAGAGATAT
CTACTGATGATGATTGGTCTGCTATGGTTTCTTGGCCACAATTACGAGAAGCGGTAAAAACAGGTCGCTTAGATGTATCA
AGCCATACTGTTGATCATTTGCGAGTCGATCGCTTACCTGAAGAGCAAATTTTAATCCAATTACAACAGTCAAAAATGCG
CATAGAGCAGGAGCTAGCAGGAAAATGTCATTATTTTTGTTACCCCAATGGCAATTATAATGATTTAGCTATCAGCTTGC
TGAAAAAAACTGGCTATCGTGCTGCTTTTTCAACGGATGTCGGATTGTGTGAAGTAAAGGATAGTTTAATGACTTTAAAA
CGTTTTAATTTCCCTGCCAATAAAACAAAAAATGAGATTCTTTATCAGCTCAATCGTTGA

Upstream 100 bases:

>100_bases
ATAGCGTCTTTTCTCACTATCAGAATCTGCTTAAATATTATGATTAATAAAAAAGACACAAAAAAATCGTGATGTAATGT
TAACTCAGGTGTTTATTATA

Downstream 100 bases:

>100_bases
ACTCTCTCTGTATATATATGGAGCCGTTTTATGATTTAAATATAATTCGTTAGCTATTTTCCAGAGACAGAAAATCTGGT
TATTTGTCAATATATTAATT

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Polysaccharide Deacetylase Family Protein; Polysaccharide Deacetylase Domain Protein; Polysaccharide Deacetylase Protein Pda4E; Polysaccharide Deacetylase Domain-Containing Protein

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MKRIFKKLILSCLDKLGFLYFLHYKNRHKISVLMLHGVMTPHDNTIWNPLRPQLSPGELQRVLGILSSYYQFITVKQCID
MLEGKIPLIDNALLITFDDGYRNNIDYALPICEQFAIKPVLFVTTGYIDSGLPFWFDRLDYALQQNMGGVISFEYQGAKY
CFDATSRQALKTSYQAFRDHCKQVFTEDIEMNQLFNALSEMLEIRAGKALREISTDDDWSAMVSWPQLREAVKTGRLDVS
SHTVDHLRVDRLPEEQILIQLQQSKMRIEQELAGKCHYFCYPNGNYNDLAISLLKKTGYRAAFSTDVGLCEVKDSLMTLK
RFNFPANKTKNEILYQLNR

Sequences:

>Translated_339_residues
MKRIFKKLILSCLDKLGFLYFLHYKNRHKISVLMLHGVMTPHDNTIWNPLRPQLSPGELQRVLGILSSYYQFITVKQCID
MLEGKIPLIDNALLITFDDGYRNNIDYALPICEQFAIKPVLFVTTGYIDSGLPFWFDRLDYALQQNMGGVISFEYQGAKY
CFDATSRQALKTSYQAFRDHCKQVFTEDIEMNQLFNALSEMLEIRAGKALREISTDDDWSAMVSWPQLREAVKTGRLDVS
SHTVDHLRVDRLPEEQILIQLQQSKMRIEQELAGKCHYFCYPNGNYNDLAISLLKKTGYRAAFSTDVGLCEVKDSLMTLK
RFNFPANKTKNEILYQLNR
>Mature_339_residues
MKRIFKKLILSCLDKLGFLYFLHYKNRHKISVLMLHGVMTPHDNTIWNPLRPQLSPGELQRVLGILSSYYQFITVKQCID
MLEGKIPLIDNALLITFDDGYRNNIDYALPICEQFAIKPVLFVTTGYIDSGLPFWFDRLDYALQQNMGGVISFEYQGAKY
CFDATSRQALKTSYQAFRDHCKQVFTEDIEMNQLFNALSEMLEIRAGKALREISTDDDWSAMVSWPQLREAVKTGRLDVS
SHTVDHLRVDRLPEEQILIQLQQSKMRIEQELAGKCHYFCYPNGNYNDLAISLLKKTGYRAAFSTDVGLCEVKDSLMTLK
RFNFPANKTKNEILYQLNR

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39276; Mature: 39276

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIFKKLILSCLDKLGFLYFLHYKNRHKISVLMLHGVMTPHDNTIWNPLRPQLSPGELQ
CHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHH
RVLGILSSYYQFITVKQCIDMLEGKIPLIDNALLITFDDGYRNNIDYALPICEQFAIKPV
HHHHHHHHHHHHHHHHHHHHHHCCCCCEECCEEEEEECCCCCCCCCHHHHHHHHHCCCCE
LFVTTGYIDSGLPFWFDRLDYALQQNMGGVISFEYQGAKYCFDATSRQALKTSYQAFRDH
EEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCEECCCHHHHHHHHHHHHHHHH
CKQVFTEDIEMNQLFNALSEMLEIRAGKALREISTDDDWSAMVSWPQLREAVKTGRLDVS
HHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHCCCCCCHHHHHCCHHHHHHHHHCCCCCC
SHTVDHLRVDRLPEEQILIQLQQSKMRIEQELAGKCHYFCYPNGNYNDLAISLLKKTGYR
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCC
AAFSTDVGLCEVKDSLMTLKRFNFPANKTKNEILYQLNR
EEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHEEECC
>Mature Secondary Structure
MKRIFKKLILSCLDKLGFLYFLHYKNRHKISVLMLHGVMTPHDNTIWNPLRPQLSPGELQ
CHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHH
RVLGILSSYYQFITVKQCIDMLEGKIPLIDNALLITFDDGYRNNIDYALPICEQFAIKPV
HHHHHHHHHHHHHHHHHHHHHHCCCCCEECCEEEEEECCCCCCCCCHHHHHHHHHCCCCE
LFVTTGYIDSGLPFWFDRLDYALQQNMGGVISFEYQGAKYCFDATSRQALKTSYQAFRDH
EEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCEECCCHHHHHHHHHHHHHHHH
CKQVFTEDIEMNQLFNALSEMLEIRAGKALREISTDDDWSAMVSWPQLREAVKTGRLDVS
HHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHCCCCCCHHHHHCCHHHHHHHHHCCCCCC
SHTVDHLRVDRLPEEQILIQLQQSKMRIEQELAGKCHYFCYPNGNYNDLAISLLKKTGYR
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCC
AAFSTDVGLCEVKDSLMTLKRFNFPANKTKNEILYQLNR
EEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA