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The map label for this gene is cynR [C]

Identifier: 119944198

GI number: 119944198

Start: 529139

End: 529501

Strand: Direct

Name: cynR [C]

Synonym: Ping_0418

Alternate gene names: 119944198

Gene position: 529139-529501 (Clockwise)

Preceding gene: 119944191

Following gene: 119944199

Centisome position: 11.6

GC content: 41.87

Gene sequence:

>363_bases
ATGAAGCAACTTATGGATTTTAATTATTTTCAGGTAGTCGCTAAGGGAGGTTCAATTCGTAAGCCTGCAGACCAACTTTC
GATCACTTCAACAGCACTTAACCGACGTATTCTTAGCATGGAAGATGAACTAGGTGAAAAAATATTTGAGCGTCAAGCCA
GTGGTCTACGACTTTCTGCTGCAGGAGAGTTATTCTTACATCATGTCCAAAGACAACTTGCTGATCTTGAACGTGTTAAA
AGTCAAATATCAGATCTTAGCGGTGTAAGGCGAGGGCATGTAAATATCGCATGTAGTCAGGCACTGCTTACGTCTTTTTT
CCTAAACAAATCGCACGTTTTCGGCACCAACATCCTGCGGTGA

Upstream 100 bases:

>100_bases
TATGCTGTTGGTTTTGCAGTTACGTGGTGCATATTTTGCATCACATGGATAAGTGTTCAATGGAGCAATTATCCAAACTT
TTACTAATGGAAGAATATAA

Downstream 100 bases:

>100_bases
CTTTTAGTCTTTATTTAAGGGATAGAAAGGCTGCAGAATCTACACTATTAGACAATAGTGTAGATTTAGCCATGGTATTT
GAACCAGTCTACATGAATGA

Product: transcriptional regulator of LysR family protein

Products: NA

Alternate protein names: Transcriptional Regulator LysR Family; Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator LysR; LysR Family Transcription Regulator Protein; Transcriptional Regulator Of LysR Family Protein; Transcriptional Regulator LysR Family Protein; LysR Family Protein; RuBisCO Transcriptional Regulator; Transcriptional Regulatory Protein; Transcriptional Regulator Lysr Family

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MKQLMDFNYFQVVAKGGSIRKPADQLSITSTALNRRILSMEDELGEKIFERQASGLRLSAAGELFLHHVQRQLADLERVK
SQISDLSGVRRGHVNIACSQALLTSFFLNKSHVFGTNILR

Sequences:

>Translated_120_residues
MKQLMDFNYFQVVAKGGSIRKPADQLSITSTALNRRILSMEDELGEKIFERQASGLRLSAAGELFLHHVQRQLADLERVK
SQISDLSGVRRGHVNIACSQALLTSFFLNKSHVFGTNILR
>Mature_120_residues
MKQLMDFNYFQVVAKGGSIRKPADQLSITSTALNRRILSMEDELGEKIFERQASGLRLSAAGELFLHHVQRQLADLERVK
SQISDLSGVRRGHVNIACSQALLTSFFLNKSHVFGTNILR

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI157672245, Length=104, Percent_Identity=33.6538461538462, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13473; Mature: 13473

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLMDFNYFQVVAKGGSIRKPADQLSITSTALNRRILSMEDELGEKIFERQASGLRLSA
CCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHH
AGELFLHHVQRQLADLERVKSQISDLSGVRRGHVNIACSQALLTSFFLNKSHVFGTNILR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKQLMDFNYFQVVAKGGSIRKPADQLSITSTALNRRILSMEDELGEKIFERQASGLRLSA
CCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHH
AGELFLHHVQRQLADLERVKSQISDLSGVRRGHVNIACSQALLTSFFLNKSHVFGTNILR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA