Definition | Psychromonas ingrahamii 37, complete genome. |
---|---|
Accession | NC_008709 |
Length | 4,559,598 |
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The map label for this gene is fusA1 [H]
Identifier: 119944139
GI number: 119944139
Start: 459328
End: 461424
Strand: Direct
Name: fusA1 [H]
Synonym: Ping_0357
Alternate gene names: 119944139
Gene position: 459328-461424 (Clockwise)
Preceding gene: 119944138
Following gene: 119944140
Centisome position: 10.07
GC content: 42.16
Gene sequence:
>2097_bases ATGAAAGATTTAAGTAAATACAGAAATATTGGTATTTTTGCCCATGTTGATGCGGGTAAAACAACAACCACAGAGCGTAT CCTAAAACTGACTGGTACAATCCACAAAACCGGTGAAGTGCATGATGGTGAATCTACAACTGACTTTATGGAACAGGAAG CTGAGCGCGGTATTACTATCCAGTCTGCAGCGGTAACTTGTTTCTGGAAAGACCACCGTTTTAACGTTATTGATACTCCT GGGCACGTTGACTTCACAGTAGAAGTTTACCGTTCTCTCAAAGTATTGGATGGCGGCATCGGTGTATTCTGTGGTAGTGG TGGTGTTGAACCGCAATCAGAAACAAACTGGCGTTATGCGAATGACTCAAAAGTTGCACGTATTATCTTTGTTAATAAAT TAGACCGTATGGGTGCTGATTTTTACCGCGTGATTGAGCAGACTAAAAAAGTACTAGGTGCTAACCCGCTAGTCATGGTT TTACCTATCGGTATTGAAGATGAATTCAGTGGTGTTGTTGACTTATTAACACGTAAAGCATATATCTGGGATGCGACTGG TCTTCCAGAAAACTATGAAATTACTGATATTCCAGCTGATATGCTTGAATTGACTGAAGAATACCGTGAAAAATTGATCG AAACTGCCGTTGAGCAAGACGATGATCTAATGGAAGCGTACCTGGAAGAGGGTGTTGAGCCTTCTATGGAAGAACTTAAA CGTTGTATCCGTAAAGGAACACGTACTATGGAATTCTTCCCAGCTTACTGTGGTTCTGCCTTCAAAAACAAAGGTATTCA AAATATTCTTGACGCTGTTGTTGATTACCTGCCTTCTCCAACAGAAGTTGATCCACAACCACTTACGGATGAAGAAGGCG AACCAACTGGTAAGTTTGCAACTGTCTCTACAGAAGAAACATTTAAAGCCTTAGCATTTAAAATTATGGATGACCGTTTT GGTGCTTTAACCTTTATACGTATCTATTCCGGTACGCTTAAGAAAGGCGATACCATCCTTAACTCCTTTACGGGTAAAAC TGAGCGTGTTGGCCGTATGGTTGAGATGCAGGCAGATGATCGTAAAGAGCTATCCGCAGCACAAGCCGGTGATATCATGG CTATCGTTGGTATGAAGAACAACGTTCAAACGGGCCACACTTTATGTGATCCTAAAGACCCGATTATCCTGGAAGCAATG GTATTCCCTAACCCGGTAATCTCTATCTCTGTTACACCTAAAGATAAAGGTTCAACTGAGAAGATGGGTATTGCTATCGG TAAAATGGTTGCAGAAGATCCAACCTTTAAAGTTGAAACTGATGTTGATTCAGGTGAAACTATCCTGTCTGGTATGGGTG AGCTTCACTTGGATATCAAAGTTGATATCCTTAAGCGTACCTACGGTGTTGACCTTGCTGTTGGTGAACCTCAAGTTGCT TACCGTGAAACTATCACCGAAGAAATTGAAGATAGCTACACACATAAGAAACAGTCTGGTGGTTCTGGTCAGTTCGGTAA AATTGATTACCGTATCAAGCCTGGTGAACCAGGTAGTGGTTTCGTCTTCACTTCTAAAGTTGTTGGCGGTAACGTACCAA AAGAATTCTTCCCGGCGATTGAGAAAGGCTTTAAGGGAATGATGGATACCGGTGTACTAGCTGGCTTCCCAGTACTTGAC GTTGAAGTTGAAGTTTATGATGGTGGTTTCCATGCCGTCGATTCATCTGCAGTTGCATTTGAATTAGCAGCACGTGGTGC ATTCCGTCAGTCAATTCCAAAAGCGGGTGCACAACTTCTTGAACCAATCATGGCTGTAGATGTATTTACGCCTGATGATC ACGTGGGTGATGTTATCGGTGACCTTAACCGTCGTCGTGGTATGATTGCCGGCCAAGAAGCAGGAACTAGTGGTGTTCGT ATTAAAGCTGACGTACCTCTTTCAGAAATGTTTGGTTACATTGGTTCTCTACGTACAATGACATCAGGCCGTGGTCAGTT CTCTATGCTGTTTAAAAACTATATGCCTTGTCCAAACAATGTTGCTGAAGGCGTAATCGAAAAAGTTAAAGCTGATAAAG CTGCTAAAAAGAAATAG
Upstream 100 bases:
>100_bases CATATTTTATTTTATTTTTAATTCCGTGTTCTGTTTAACGCTAATACTTGTATAATGCTGCCGGAATATTGATTCAATTT TTTACTAAAGAGTATATAAA
Downstream 100 bases:
>100_bases TTTCTTTTAAATAACTTTTAAGATTAATAAACCTCGTTATCCATGATAGCGGGGTTTTTTTATGTCTGCCTGCAAAAATA TCTGGGCACATATATTCAGT
Product: elongation factor G
Products: GDP; phosphate
Alternate protein names: EF-G 1 [H]
Number of amino acids: Translated: 698; Mature: 698
Protein sequence:
>698_residues MKDLSKYRNIGIFAHVDAGKTTTTERILKLTGTIHKTGEVHDGESTTDFMEQEAERGITIQSAAVTCFWKDHRFNVIDTP GHVDFTVEVYRSLKVLDGGIGVFCGSGGVEPQSETNWRYANDSKVARIIFVNKLDRMGADFYRVIEQTKKVLGANPLVMV LPIGIEDEFSGVVDLLTRKAYIWDATGLPENYEITDIPADMLELTEEYREKLIETAVEQDDDLMEAYLEEGVEPSMEELK RCIRKGTRTMEFFPAYCGSAFKNKGIQNILDAVVDYLPSPTEVDPQPLTDEEGEPTGKFATVSTEETFKALAFKIMDDRF GALTFIRIYSGTLKKGDTILNSFTGKTERVGRMVEMQADDRKELSAAQAGDIMAIVGMKNNVQTGHTLCDPKDPIILEAM VFPNPVISISVTPKDKGSTEKMGIAIGKMVAEDPTFKVETDVDSGETILSGMGELHLDIKVDILKRTYGVDLAVGEPQVA YRETITEEIEDSYTHKKQSGGSGQFGKIDYRIKPGEPGSGFVFTSKVVGGNVPKEFFPAIEKGFKGMMDTGVLAGFPVLD VEVEVYDGGFHAVDSSAVAFELAARGAFRQSIPKAGAQLLEPIMAVDVFTPDDHVGDVIGDLNRRRGMIAGQEAGTSGVR IKADVPLSEMFGYIGSLRTMTSGRGQFSMLFKNYMPCPNNVAEGVIEKVKADKAAKKK
Sequences:
>Translated_698_residues MKDLSKYRNIGIFAHVDAGKTTTTERILKLTGTIHKTGEVHDGESTTDFMEQEAERGITIQSAAVTCFWKDHRFNVIDTP GHVDFTVEVYRSLKVLDGGIGVFCGSGGVEPQSETNWRYANDSKVARIIFVNKLDRMGADFYRVIEQTKKVLGANPLVMV LPIGIEDEFSGVVDLLTRKAYIWDATGLPENYEITDIPADMLELTEEYREKLIETAVEQDDDLMEAYLEEGVEPSMEELK RCIRKGTRTMEFFPAYCGSAFKNKGIQNILDAVVDYLPSPTEVDPQPLTDEEGEPTGKFATVSTEETFKALAFKIMDDRF GALTFIRIYSGTLKKGDTILNSFTGKTERVGRMVEMQADDRKELSAAQAGDIMAIVGMKNNVQTGHTLCDPKDPIILEAM VFPNPVISISVTPKDKGSTEKMGIAIGKMVAEDPTFKVETDVDSGETILSGMGELHLDIKVDILKRTYGVDLAVGEPQVA YRETITEEIEDSYTHKKQSGGSGQFGKIDYRIKPGEPGSGFVFTSKVVGGNVPKEFFPAIEKGFKGMMDTGVLAGFPVLD VEVEVYDGGFHAVDSSAVAFELAARGAFRQSIPKAGAQLLEPIMAVDVFTPDDHVGDVIGDLNRRRGMIAGQEAGTSGVR IKADVPLSEMFGYIGSLRTMTSGRGQFSMLFKNYMPCPNNVAEGVIEKVKADKAAKKK >Mature_698_residues MKDLSKYRNIGIFAHVDAGKTTTTERILKLTGTIHKTGEVHDGESTTDFMEQEAERGITIQSAAVTCFWKDHRFNVIDTP GHVDFTVEVYRSLKVLDGGIGVFCGSGGVEPQSETNWRYANDSKVARIIFVNKLDRMGADFYRVIEQTKKVLGANPLVMV LPIGIEDEFSGVVDLLTRKAYIWDATGLPENYEITDIPADMLELTEEYREKLIETAVEQDDDLMEAYLEEGVEPSMEELK RCIRKGTRTMEFFPAYCGSAFKNKGIQNILDAVVDYLPSPTEVDPQPLTDEEGEPTGKFATVSTEETFKALAFKIMDDRF GALTFIRIYSGTLKKGDTILNSFTGKTERVGRMVEMQADDRKELSAAQAGDIMAIVGMKNNVQTGHTLCDPKDPIILEAM VFPNPVISISVTPKDKGSTEKMGIAIGKMVAEDPTFKVETDVDSGETILSGMGELHLDIKVDILKRTYGVDLAVGEPQVA YRETITEEIEDSYTHKKQSGGSGQFGKIDYRIKPGEPGSGFVFTSKVVGGNVPKEFFPAIEKGFKGMMDTGVLAGFPVLD VEVEVYDGGFHAVDSSAVAFELAARGAFRQSIPKAGAQLLEPIMAVDVFTPDDHVGDVIGDLNRRRGMIAGQEAGTSGVR IKADVPLSEMFGYIGSLRTMTSGRGQFSMLFKNYMPCPNNVAEGVIEKVKADKAAKKK
Specific function: Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and
COG id: COG0480
COG function: function code J; Translation elongation factors (GTPases)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. EF-G/EF-2 subfamily [H]
Homologues:
Organism=Homo sapiens, GI18390331, Length=694, Percent_Identity=42.6512968299712, Blast_Score=555, Evalue=1e-158, Organism=Homo sapiens, GI19923640, Length=715, Percent_Identity=37.2027972027972, Blast_Score=411, Evalue=1e-114, Organism=Homo sapiens, GI25306283, Length=398, Percent_Identity=44.2211055276382, Blast_Score=284, Evalue=2e-76, Organism=Homo sapiens, GI25306287, Length=291, Percent_Identity=48.4536082474227, Blast_Score=246, Evalue=6e-65, Organism=Homo sapiens, GI157426893, Length=159, Percent_Identity=38.9937106918239, Blast_Score=110, Evalue=5e-24, Organism=Homo sapiens, GI94966754, Length=140, Percent_Identity=34.2857142857143, Blast_Score=87, Evalue=4e-17, Organism=Homo sapiens, GI4503483, Length=153, Percent_Identity=35.9477124183007, Blast_Score=85, Evalue=2e-16, Organism=Homo sapiens, GI310132016, Length=123, Percent_Identity=35.7723577235772, Blast_Score=73, Evalue=8e-13, Organism=Homo sapiens, GI310110807, Length=123, Percent_Identity=35.7723577235772, Blast_Score=73, Evalue=8e-13, Organism=Homo sapiens, GI310123363, Length=123, Percent_Identity=35.7723577235772, Blast_Score=73, Evalue=8e-13, Organism=Escherichia coli, GI1789738, Length=696, Percent_Identity=53.735632183908, Blast_Score=736, Evalue=0.0, Organism=Escherichia coli, GI1790835, Length=496, Percent_Identity=24.5967741935484, Blast_Score=135, Evalue=7e-33, Organism=Escherichia coli, GI48994988, Length=144, Percent_Identity=38.1944444444444, Blast_Score=97, Evalue=4e-21, Organism=Escherichia coli, GI1788922, Length=155, Percent_Identity=36.1290322580645, Blast_Score=96, Evalue=7e-21, Organism=Caenorhabditis elegans, GI17533571, Length=686, Percent_Identity=38.7755102040816, Blast_Score=471, Evalue=1e-133, Organism=Caenorhabditis elegans, GI17556745, Length=712, Percent_Identity=30.8988764044944, Blast_Score=312, Evalue=4e-85, Organism=Caenorhabditis elegans, GI17552882, Length=798, Percent_Identity=22.6817042606516, Blast_Score=107, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17557151, Length=151, Percent_Identity=38.4105960264901, Blast_Score=105, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17506493, Length=422, Percent_Identity=25.8293838862559, Blast_Score=99, Evalue=6e-21, Organism=Caenorhabditis elegans, GI71988819, Length=134, Percent_Identity=30.5970149253731, Blast_Score=70, Evalue=4e-12, Organism=Caenorhabditis elegans, GI71988811, Length=134, Percent_Identity=30.5970149253731, Blast_Score=69, Evalue=9e-12, Organism=Saccharomyces cerevisiae, GI6323098, Length=700, Percent_Identity=41.2857142857143, Blast_Score=529, Evalue=1e-151, Organism=Saccharomyces cerevisiae, GI6322359, Length=787, Percent_Identity=31.3850063532402, Blast_Score=348, Evalue=1e-96, Organism=Saccharomyces cerevisiae, GI6324707, Length=412, Percent_Identity=24.5145631067961, Blast_Score=96, Evalue=2e-20, Organism=Saccharomyces cerevisiae, GI6320593, Length=412, Percent_Identity=24.5145631067961, Blast_Score=96, Evalue=2e-20, Organism=Saccharomyces cerevisiae, GI6323320, Length=150, Percent_Identity=37.3333333333333, Blast_Score=95, Evalue=5e-20, Organism=Saccharomyces cerevisiae, GI6324166, Length=179, Percent_Identity=30.7262569832402, Blast_Score=79, Evalue=3e-15, Organism=Saccharomyces cerevisiae, GI6324761, Length=140, Percent_Identity=34.2857142857143, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24582462, Length=714, Percent_Identity=41.1764705882353, Blast_Score=541, Evalue=1e-154, Organism=Drosophila melanogaster, GI221458488, Length=738, Percent_Identity=32.7913279132791, Blast_Score=362, Evalue=1e-100, Organism=Drosophila melanogaster, GI21357743, Length=795, Percent_Identity=24.1509433962264, Blast_Score=129, Evalue=7e-30, Organism=Drosophila melanogaster, GI78706572, Length=155, Percent_Identity=36.7741935483871, Blast_Score=104, Evalue=2e-22, Organism=Drosophila melanogaster, GI28574573, Length=171, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=8e-18, Organism=Drosophila melanogaster, GI24585709, Length=151, Percent_Identity=37.0860927152318, Blast_Score=86, Evalue=6e-17, Organism=Drosophila melanogaster, GI24585711, Length=151, Percent_Identity=37.0860927152318, Blast_Score=86, Evalue=6e-17, Organism=Drosophila melanogaster, GI24585713, Length=151, Percent_Identity=37.0860927152318, Blast_Score=86, Evalue=6e-17,
Paralogues:
None
Copy number: 1080 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2520 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 7984 Molecules/Cell In: Growth Phase, Gl
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR000795 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR005225 - InterPro: IPR004540 - InterPro: IPR000640 - InterPro: IPR005517 - InterPro: IPR004161 - InterPro: IPR009000 [H]
Pfam domain/function: PF00679 EFG_C; PF03764 EFG_IV; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2 [H]
EC number: 3.6.5.3
Molecular weight: Translated: 76596; Mature: 76596
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDLSKYRNIGIFAHVDAGKTTTTERILKLTGTIHKTGEVHDGESTTDFMEQEAERGITI CCCHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHCCCEE QSAAVTCFWKDHRFNVIDTPGHVDFTVEVYRSLKVLDGGIGVFCGSGGVEPQSETNWRYA EEEEEEEEEECCCCEEECCCCCEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEC NDSKVARIIFVNKLDRMGADFYRVIEQTKKVLGANPLVMVLPIGIEDEFSGVVDLLTRKA CCCCEEEEEEEECHHHHCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCC YIWDATGLPENYEITDIPADMLELTEEYREKLIETAVEQDDDLMEAYLEEGVEPSMEELK EEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHH RCIRKGTRTMEFFPAYCGSAFKNKGIQNILDAVVDYLPSPTEVDPQPLTDEEGEPTGKFA HHHHCCCCEEEHHHHHHCHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEE TVSTEETFKALAFKIMDDRFGALTFIRIYSGTLKKGDTILNSFTGKTERVGRMVEMQADD EECHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHCCCCHHHHHHHEEECCCC RKELSAAQAGDIMAIVGMKNNVQTGHTLCDPKDPIILEAMVFPNPVISISVTPKDKGSTE HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCH KMGIAIGKMVAEDPTFKVETDVDSGETILSGMGELHLDIKVDILKRTYGVDLAVGEPQVA HHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCEEEEEEEEEEHHHHCCEEEECCCCHH YRETITEEIEDSYTHKKQSGGSGQFGKIDYRIKPGEPGSGFVFTSKVVGGNVPKEFFPAI HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEHHHCCCCCHHHHHHH EKGFKGMMDTGVLAGFPVLDVEVEVYDGGFHAVDSSAVAFELAARGAFRQSIPKAGAQLL HHHHHHHHHCCHHCCCCEEEEEEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHH EPIMAVDVFTPDDHVGDVIGDLNRRRGMIAGQEAGTSGVRIKADVPLSEMFGYIGSLRTM HHHHHEEEECCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEECCCHHHHHHHHHHHHHH TSGRGQFSMLFKNYMPCPNNVAEGVIEKVKADKAAKKK CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKDLSKYRNIGIFAHVDAGKTTTTERILKLTGTIHKTGEVHDGESTTDFMEQEAERGITI CCCHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHCCCEE QSAAVTCFWKDHRFNVIDTPGHVDFTVEVYRSLKVLDGGIGVFCGSGGVEPQSETNWRYA EEEEEEEEEECCCCEEECCCCCEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEC NDSKVARIIFVNKLDRMGADFYRVIEQTKKVLGANPLVMVLPIGIEDEFSGVVDLLTRKA CCCCEEEEEEEECHHHHCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCC YIWDATGLPENYEITDIPADMLELTEEYREKLIETAVEQDDDLMEAYLEEGVEPSMEELK EEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHH RCIRKGTRTMEFFPAYCGSAFKNKGIQNILDAVVDYLPSPTEVDPQPLTDEEGEPTGKFA HHHHCCCCEEEHHHHHHCHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEE TVSTEETFKALAFKIMDDRFGALTFIRIYSGTLKKGDTILNSFTGKTERVGRMVEMQADD EECHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHCCCCHHHHHHHEEECCCC RKELSAAQAGDIMAIVGMKNNVQTGHTLCDPKDPIILEAMVFPNPVISISVTPKDKGSTE HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCH KMGIAIGKMVAEDPTFKVETDVDSGETILSGMGELHLDIKVDILKRTYGVDLAVGEPQVA HHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCEEEEEEEEEEHHHHCCEEEECCCCHH YRETITEEIEDSYTHKKQSGGSGQFGKIDYRIKPGEPGSGFVFTSKVVGGNVPKEFFPAI HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEHHHCCCCCHHHHHHH EKGFKGMMDTGVLAGFPVLDVEVEVYDGGFHAVDSSAVAFELAARGAFRQSIPKAGAQLL HHHHHHHHHCCHHCCCCEEEEEEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHH EPIMAVDVFTPDDHVGDVIGDLNRRRGMIAGQEAGTSGVRIKADVPLSEMFGYIGSLRTM HHHHHEEEECCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEECCCHHHHHHHHHHHHHH TSGRGQFSMLFKNYMPCPNNVAEGVIEKVKADKAAKKK CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: GTP; H2O
Specific reaction: GTP + H2O = GDP + phosphate
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA