Click here to switch to the map view.

The map label for this gene is rbsD

Identifier: 119944125

GI number: 119944125

Start: 441616

End: 442032

Strand: Direct

Name: rbsD

Synonym: Ping_0340

Alternate gene names: 119944125

Gene position: 441616-442032 (Clockwise)

Preceding gene: 119944124

Following gene: 119944126

Centisome position: 9.69

GC content: 43.41

Gene sequence:

>417_bases
ATGAAAAAAACCGCACTGCTCAACGCTGAATTATCTTACCTGGTCGCTTCGCTGGGGCACTTTGATGAAATAACTATCTG
TGATGCGGGATTGCCTATTCCAAATGAGACACAGCGAATTGATCTTGCCTTAACCCATGGTGTACCCGCCTTTATTGATA
CGGTTCGCGTGATCTTAAGTGAAATGCAAATTACAGGCGTTTTATTAGCCAGTGAATTCAAACAAGTCAGCCCTGATTTA
CACCGGGCATTAATTGAACTTGTCGAACAGGAAAAGCTTGCTGGCAGCAGGATAGAACTTATCTATATCAGCCACGAAGC
CTTTAAGGAAAGAACATCGAACAGCAAAGCGGTGGTTCGCACGGGTGAATGTACTCCTTATGCCAATGTTATTTTCCAAT
CTGGTGTGGTTTTTTAG

Upstream 100 bases:

>100_bases
AACGTTTGCGCAATCGTTTCGTTTGTAAAAATTTACAAAAAAATAATATTTAAATATATTCATAATCTTAAAAATACAAT
GAATTATTAAGGCGAACTCC

Downstream 100 bases:

>100_bases
TTACAAATAATGATTAAGGAGCTGAGATGAATCAGCCAATTTTAGAACTAAAAGACATTCATAAATCATTCCCAGGCGTA
AAAGCCCTTGATAATGCGTG

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MKKTALLNAELSYLVASLGHFDEITICDAGLPIPNETQRIDLALTHGVPAFIDTVRVILSEMQITGVLLASEFKQVSPDL
HRALIELVEQEKLAGSRIELIYISHEAFKERTSNSKAVVRTGECTPYANVIFQSGVVF

Sequences:

>Translated_138_residues
MKKTALLNAELSYLVASLGHFDEITICDAGLPIPNETQRIDLALTHGVPAFIDTVRVILSEMQITGVLLASEFKQVSPDL
HRALIELVEQEKLAGSRIELIYISHEAFKERTSNSKAVVRTGECTPYANVIFQSGVVF
>Mature_138_residues
MKKTALLNAELSYLVASLGHFDEITICDAGLPIPNETQRIDLALTHGVPAFIDTVRVILSEMQITGVLLASEFKQVSPDL
HRALIELVEQEKLAGSRIELIYISHEAFKERTSNSKAVVRTGECTPYANVIFQSGVVF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=48.2014388489209, Blast_Score=153, Evalue=4e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_PSYIN (A1SRU1)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_941805.1
- ProteinModelPortal:   A1SRU1
- SMR:   A1SRU1
- STRING:   A1SRU1
- GeneID:   4626717
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_0340
- eggNOG:   COG1869
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- PhylomeDB:   A1SRU1
- ProtClustDB:   PRK11797
- BioCyc:   PING357804:PING_0340-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 15213; Mature: 15213

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 105-105

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTALLNAELSYLVASLGHFDEITICDAGLPIPNETQRIDLALTHGVPAFIDTVRVILS
CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHH
EMQITGVLLASEFKQVSPDLHRALIELVEQEKLAGSRIELIYISHEAFKERTSNSKAVVR
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHCCCCCEEEE
TGECTPYANVIFQSGVVF
ECCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MKKTALLNAELSYLVASLGHFDEITICDAGLPIPNETQRIDLALTHGVPAFIDTVRVILS
CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHH
EMQITGVLLASEFKQVSPDLHRALIELVEQEKLAGSRIELIYISHEAFKERTSNSKAVVR
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHCCCCCEEEE
TGECTPYANVIFQSGVVF
ECCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA