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The map label for this gene is cobD [H]

Identifier: 119899807

GI number: 119899807

Start: 3860126

End: 3861145

Strand: Direct

Name: cobD [H]

Synonym: azo3518

Alternate gene names: 119899807

Gene position: 3860126-3861145 (Clockwise)

Preceding gene: 119899805

Following gene: 119899808

Centisome position: 88.21

GC content: 74.02

Gene sequence:

>1020_bases
GTGCCGGCCGCCCGGCGTCCCGCTGCCGCCCTGTTTCCCGCCCCCACGGTTCCGCCGGGCTTTTCATCGCTGCCATCCAT
GTCCGCTACCGTCCTGCTCGTCGCCAAACTCGCCGCTGGCATCGCCTGCGACCGCGTCTTCGGTGAGCCGCGGCGCTTTC
ATCCCCTGGTGGGCTTCGGCCGCTGGGCGCGCGCGGTCGAAAGTCTGGTGCGCGGGACGGGTGCCGTCGGCGCCTCGCGC
CCAGGCGGCCTGTTTGCCTGGCTGCTCGCGGTCGGGCCCTGGGTGGCGCTTGCGTTCGCGCTACGCAGCGCCCACCCGCA
GGCGCACTGGGTGGTCGACATCGCGCTGCTGTACTTCGCGCTCGGCGCCCGCAGCCTGGTTGAACATGGCGAAGCCGTGG
CAGCACCGCTGGCCGATGGCCGGCTGGACGAAGCGCGCGAACGCGTCGGCTGGATCGTCAGCCGCGACACCCGCGCGCTG
GACAGCACCGGCGTCGCCCGCGCGGGCACTGAATCCGTGCTGGAAAACGGCAACGACGCCGTGTTCGGCACCCTGTTCTG
GTTTCTGGTCGGCGGCGGTGCCGGGGCGCTGCTGTTCCGGCTCGCCAACACGCTGGATGCCATGTGGGGCTACCGCAGCC
CGCGCTATCTTCGCTTCGGCTGGGCGGCCGCGCGGCTGGACGACGTGCTGAACGCGGCCCCGGCGCGCCTGACCGCGCTC
ACCTATGCGCTGCTCGGCCGCACCCGGCGCGCGCTGCACTGCTGGCGGCGGCAGGCGCCGGCCTGGGATAGCCCGAATGC
CGGCCCGGTCATGGCGGCCGGCGCCGGTGCGCTTGGCGTCGCGCTCGGCGGCAGCGCGATCTATCACGGCCGCGAGGAAA
GCCGCCCGGCACTCGGGGAAGGTGGCGCGCCGGATGCCGGCACCATCCGCGCCGCCCTCGCGCTCGTCCGTCGTGGCATG
CTGCTGTGGCTGGCCGCGGCGGCCTGCGTCGCCGCAGTGCTGGAGCTGGCGGGTGCTTGA

Upstream 100 bases:

>100_bases
CTTGCCGGCATCGGAGGTGGTGCCCTGCACCATCAGGGCGGAAGCCTTGGACATCGCGTAAAATCCGTCGCCTTGTTCGG
GGCCGTGATTATCCACCACA

Downstream 100 bases:

>100_bases
GCACGGCGGCCGCCTGCGCCGCGCCGCCGCGCAGTTCCGCATTCCACTGGCCGACTGGGTGGACCTGTCCACCGGCATCA
ACCCCCGCCCCTACCCGGTC

Product: cobalamin biosynthesis protein

Products: ADP; phosphate; Adenosyl cobinamide phosphate; Adenosyl cobinamide

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MPAARRPAAALFPAPTVPPGFSSLPSMSATVLLVAKLAAGIACDRVFGEPRRFHPLVGFGRWARAVESLVRGTGAVGASR
PGGLFAWLLAVGPWVALAFALRSAHPQAHWVVDIALLYFALGARSLVEHGEAVAAPLADGRLDEARERVGWIVSRDTRAL
DSTGVARAGTESVLENGNDAVFGTLFWFLVGGGAGALLFRLANTLDAMWGYRSPRYLRFGWAAARLDDVLNAAPARLTAL
TYALLGRTRRALHCWRRQAPAWDSPNAGPVMAAGAGALGVALGGSAIYHGREESRPALGEGGAPDAGTIRAALALVRRGM
LLWLAAAACVAAVLELAGA

Sequences:

>Translated_339_residues
MPAARRPAAALFPAPTVPPGFSSLPSMSATVLLVAKLAAGIACDRVFGEPRRFHPLVGFGRWARAVESLVRGTGAVGASR
PGGLFAWLLAVGPWVALAFALRSAHPQAHWVVDIALLYFALGARSLVEHGEAVAAPLADGRLDEARERVGWIVSRDTRAL
DSTGVARAGTESVLENGNDAVFGTLFWFLVGGGAGALLFRLANTLDAMWGYRSPRYLRFGWAAARLDDVLNAAPARLTAL
TYALLGRTRRALHCWRRQAPAWDSPNAGPVMAAGAGALGVALGGSAIYHGREESRPALGEGGAPDAGTIRAALALVRRGM
LLWLAAAACVAAVLELAGA
>Mature_338_residues
PAARRPAAALFPAPTVPPGFSSLPSMSATVLLVAKLAAGIACDRVFGEPRRFHPLVGFGRWARAVESLVRGTGAVGASRP
GGLFAWLLAVGPWVALAFALRSAHPQAHWVVDIALLYFALGARSLVEHGEAVAAPLADGRLDEARERVGWIVSRDTRALD
STGVARAGTESVLENGNDAVFGTLFWFLVGGGAGALLFRLANTLDAMWGYRSPRYLRFGWAAARLDDVLNAAPARLTALT
YALLGRTRRALHCWRRQAPAWDSPNAGPVMAAGAGALGVALGGSAIYHGREESRPALGEGGAPDAGTIRAALALVRRGML
LWLAAAACVAAVLELAGA

Specific function: Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group [H]

COG id: COG1270

COG function: function code H; Cobalamin biosynthesis protein CobD/CbiB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CobD/CbiB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004485 [H]

Pfam domain/function: PF03186 CobD_Cbib [H]

EC number: 6.3.1.10

Molecular weight: Translated: 35408; Mature: 35277

Theoretical pI: Translated: 10.99; Mature: 10.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAARRPAAALFPAPTVPPGFSSLPSMSATVLLVAKLAAGIACDRVFGEPRRFHPLVGFG
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHH
RWARAVESLVRGTGAVGASRPGGLFAWLLAVGPWVALAFALRSAHPQAHWVVDIALLYFA
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LGARSLVEHGEAVAAPLADGRLDEARERVGWIVSRDTRALDSTGVARAGTESVLENGNDA
HHHHHHHHCCCHHCCCCCCCCHHHHHHHHCCHHCCCCHHHHCCCCCCCCHHHHHHCCCCH
VFGTLFWFLVGGGAGALLFRLANTLDAMWGYRSPRYLRFGWAAARLDDVLNAAPARLTAL
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHCCHHHHHHH
TYALLGRTRRALHCWRRQAPAWDSPNAGPVMAAGAGALGVALGGSAIYHGREESRPALGE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHCCCHHCCCCCCCCCCCCC
GGAPDAGTIRAALALVRRGMLLWLAAAACVAAVLELAGA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PAARRPAAALFPAPTVPPGFSSLPSMSATVLLVAKLAAGIACDRVFGEPRRFHPLVGFG
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHH
RWARAVESLVRGTGAVGASRPGGLFAWLLAVGPWVALAFALRSAHPQAHWVVDIALLYFA
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LGARSLVEHGEAVAAPLADGRLDEARERVGWIVSRDTRALDSTGVARAGTESVLENGNDA
HHHHHHHHCCCHHCCCCCCCCHHHHHHHHCCHHCCCCHHHHCCCCCCCCHHHHHHCCCCH
VFGTLFWFLVGGGAGALLFRLANTLDAMWGYRSPRYLRFGWAAARLDDVLNAAPARLTAL
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHCCHHHHHHH
TYALLGRTRRALHCWRRQAPAWDSPNAGPVMAAGAGALGVALGGSAIYHGREESRPALGE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHCCCHHCCCCCCCCCCCCC
GGAPDAGTIRAALALVRRGMLLWLAAAACVAAVLELAGA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; adenosylcobyric acid; (R)-1-aminopropan-2-yl phosphate; (R)-1-aminopropan-2-ol

Specific reaction: (1) ATP + adenosylcobyric acid + (R)-1-aminopropan-2-yl phosphate = ADP + phosphate + adenosylcobinamide phosphate; (2) ATP + adenosylcobyric acid + (R)-1-aminopropan-2-ol = ADP + phosphate + adenosylcobinamide

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]