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The map label for this gene is eccD4 [H]

Identifier: 119867193

GI number: 119867193

Start: 1227615

End: 1228928

Strand: Reverse

Name: eccD4 [H]

Synonym: Mkms_1142

Alternate gene names: 119867193

Gene position: 1228928-1227615 (Counterclockwise)

Preceding gene: 119867205

Following gene: 119867192

Centisome position: 21.42

GC content: 72.91

Gene sequence:

>1314_bases
ATGGGAGTAGCCGTGTCGGCCAACCTGTGTCACGTCTCTGTCCATGCCGACGACGTCGGCGCGGTGGATCTCGCGCTGCC
CGCGCGGCTGCCGGTGGCGTCGCTGATCCCGGACATCGTCCGATTGGCCGGTGCCGACACCGGGACGCCGGCACGGTGGG
AGCTCGCCACGCTGTGCGGCACCGTCCTCGACGAGGCGGTTCCGTTGCAGGATCAGGACGTTCGCGACGGTGACGTGTTG
CTGCTCAGCCCCGCGCTGTCCCGTGTGCCGCGGTTCGACCGACCCGATGTCGTCACCGCGGTGCTGGCGTCGGCGCCGCC
GCAGGGTGACACGCGTGCGCTGCGGGTGATCGTGGGGGTGATCGCGGCGGCGGCGGGAGCGCTCGCCGGTCTGGCCGGGC
AGAGATCCGCGTCGCTGATCACCCTCGGCATGCTGGCGTGCCTGGTCGGCGGGACCGCGGTCGCCATGTCGCGGGCGGGA
CGGGGGATGTGGGTGTGCGGTCCCCTCGGGTGGCTCACCGTACTGTTGGCCGGGCTGTGCGGGGCGCTGGCCGTTCCGGG
CGCGCTGGATGTGCCTCACGCACTGCTGGGTGTCGCTGCCGCAGCGTCTGTTTCGCTGGTCCTCCTCCGCCTCCGGGTCG
GGTCGCCGGTCGTGTCGACCGCGGCGGCGTGTGCGGGCCTGCTGTGCGCCGCGGTGATGTCGGGCGCGGTGGTGTGGCAG
GTGTCGCCGCATTCGGCCGGCGTCGCGCTGGCACTGCTGGCGCTCGGTGCGTTGAGCCTGGCCCCACGTCTCTCTGTCCT
GCTCTCCGGGCTGGCTCCTGCACCCTCGCTGACGGACGAACTCCTTCCCGACGCGGCCCACCGGGCGGCCGCCGGGCACC
GGCTTCTCGTCGGGCTGGTGATCGGCATCTGTGCGGCGGCGTGCATCGGCACCGCCGTGGTGGCGATCGGGGGTCTCAGT
GGTGCGCGACACTGGCTGTCCGGCACCGCGTTCTGCGTCGTCGCCGGAGCGGCGATGCTGCTGCGGTCACGCTGCTACGC
TGCGGGCGCGTGCCGGTGGGCGCTGACGCTGTCCGGATCGTGTTCGCTCACAGCAGCATTCGTGGTGGCGGCGATGCGGT
ACGGTCCTTGGGCGGCGGCGGTGGCGGTCTGCGCCGGCGTCACCGTGATCGTGCGCGAGAGCCCGGGTAAGCCGTCGCCG
CTCGCCGCGCGCTCCGTCGAGGTGCTCGAGTACGCCGTCCTGGCGGCGGTGGTGCCGGTCGCCTGCGCGGCACTCGACCT
GTTCGCCATGGTCCGCACCTCGGACCTGATATGA

Upstream 100 bases:

>100_bases
TTGGACGGTGCCCGGCGCCGATCGGTTCCCTGTCCACAAGAACCGAATTCGGTGCGCGGGACTGTCGTGGCGCGCGGTTA
CGGTGGCGACATCTCAAGCG

Downstream 100 bases:

>100_bases
CCGGCCGACTCACCGCGGCGACCCTCACCGGACTGCTCGTGGCGGCGGTTCCGTTGGCGACGGCCCCGGAGGTGTCGGCG
GTGACCCCACCCGCCGTCGA

Product: hypothetical protein

Products: NA

Alternate protein names: ESX conserved component D4; Type VII secretion system protein eccD4; T7SS protein eccD4 [H]

Number of amino acids: Translated: 437; Mature: 436

Protein sequence:

>437_residues
MGVAVSANLCHVSVHADDVGAVDLALPARLPVASLIPDIVRLAGADTGTPARWELATLCGTVLDEAVPLQDQDVRDGDVL
LLSPALSRVPRFDRPDVVTAVLASAPPQGDTRALRVIVGVIAAAAGALAGLAGQRSASLITLGMLACLVGGTAVAMSRAG
RGMWVCGPLGWLTVLLAGLCGALAVPGALDVPHALLGVAAAASVSLVLLRLRVGSPVVSTAAACAGLLCAAVMSGAVVWQ
VSPHSAGVALALLALGALSLAPRLSVLLSGLAPAPSLTDELLPDAAHRAAAGHRLLVGLVIGICAAACIGTAVVAIGGLS
GARHWLSGTAFCVVAGAAMLLRSRCYAAGACRWALTLSGSCSLTAAFVVAAMRYGPWAAAVAVCAGVTVIVRESPGKPSP
LAARSVEVLEYAVLAAVVPVACAALDLFAMVRTSDLI

Sequences:

>Translated_437_residues
MGVAVSANLCHVSVHADDVGAVDLALPARLPVASLIPDIVRLAGADTGTPARWELATLCGTVLDEAVPLQDQDVRDGDVL
LLSPALSRVPRFDRPDVVTAVLASAPPQGDTRALRVIVGVIAAAAGALAGLAGQRSASLITLGMLACLVGGTAVAMSRAG
RGMWVCGPLGWLTVLLAGLCGALAVPGALDVPHALLGVAAAASVSLVLLRLRVGSPVVSTAAACAGLLCAAVMSGAVVWQ
VSPHSAGVALALLALGALSLAPRLSVLLSGLAPAPSLTDELLPDAAHRAAAGHRLLVGLVIGICAAACIGTAVVAIGGLS
GARHWLSGTAFCVVAGAAMLLRSRCYAAGACRWALTLSGSCSLTAAFVVAAMRYGPWAAAVAVCAGVTVIVRESPGKPSP
LAARSVEVLEYAVLAAVVPVACAALDLFAMVRTSDLI
>Mature_436_residues
GVAVSANLCHVSVHADDVGAVDLALPARLPVASLIPDIVRLAGADTGTPARWELATLCGTVLDEAVPLQDQDVRDGDVLL
LSPALSRVPRFDRPDVVTAVLASAPPQGDTRALRVIVGVIAAAAGALAGLAGQRSASLITLGMLACLVGGTAVAMSRAGR
GMWVCGPLGWLTVLLAGLCGALAVPGALDVPHALLGVAAAASVSLVLLRLRVGSPVVSTAAACAGLLCAAVMSGAVVWQV
SPHSAGVALALLALGALSLAPRLSVLLSGLAPAPSLTDELLPDAAHRAAAGHRLLVGLVIGICAAACIGTAVVAIGGLSG
ARHWLSGTAFCVVAGAAMLLRSRCYAAGACRWALTLSGSCSLTAAFVVAAMRYGPWAAAVAVCAGVTVIVRESPGKPSPL
AARSVEVLEYAVLAAVVPVACAALDLFAMVRTSDLI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eccD/snm4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006707 [H]

Pfam domain/function: PF04600 DUF571 [H]

EC number: NA

Molecular weight: Translated: 43410; Mature: 43278

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVAVSANLCHVSVHADDVGAVDLALPARLPVASLIPDIVRLAGADTGTPARWELATLCG
CCEEEECCEEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
TVLDEAVPLQDQDVRDGDVLLLSPALSRVPRFDRPDVVTAVLASAPPQGDTRALRVIVGV
HHHHHCCCCCCCCCCCCCEEEECHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHH
IAAAAGALAGLAGQRSASLITLGMLACLVGGTAVAMSRAGRGMWVCGPLGWLTVLLAGLC
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCEEEECHHHHHHHHHHHHH
GALAVPGALDVPHALLGVAAAASVSLVLLRLRVGSPVVSTAAACAGLLCAAVMSGAVVWQ
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEE
VSPHSAGVALALLALGALSLAPRLSVLLSGLAPAPSLTDELLPDAAHRAAAGHRLLVGLV
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHCCHHHHHHHH
IGICAAACIGTAVVAIGGLSGARHWLSGTAFCVVAGAAMLLRSRCYAAGACRWALTLSGS
HHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
CSLTAAFVVAAMRYGPWAAAVAVCAGVTVIVRESPGKPSPLAARSVEVLEYAVLAAVVPV
CHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
ACAALDLFAMVRTSDLI
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GVAVSANLCHVSVHADDVGAVDLALPARLPVASLIPDIVRLAGADTGTPARWELATLCG
CEEEECCEEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
TVLDEAVPLQDQDVRDGDVLLLSPALSRVPRFDRPDVVTAVLASAPPQGDTRALRVIVGV
HHHHHCCCCCCCCCCCCCEEEECHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHH
IAAAAGALAGLAGQRSASLITLGMLACLVGGTAVAMSRAGRGMWVCGPLGWLTVLLAGLC
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCEEEECHHHHHHHHHHHHH
GALAVPGALDVPHALLGVAAAASVSLVLLRLRVGSPVVSTAAACAGLLCAAVMSGAVVWQ
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEE
VSPHSAGVALALLALGALSLAPRLSVLLSGLAPAPSLTDELLPDAAHRAAAGHRLLVGLV
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHCCHHHHHHHH
IGICAAACIGTAVVAIGGLSGARHWLSGTAFCVVAGAAMLLRSRCYAAGACRWALTLSGS
HHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
CSLTAAFVVAAMRYGPWAAAVAVCAGVTVIVRESPGKPSPLAARSVEVLEYAVLAAVVPV
CHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
ACAALDLFAMVRTSDLI
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]