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The map label for this gene is pcl [H]

Identifier: 119776514

GI number: 119776514

Start: 4008759

End: 4010138

Strand: Direct

Name: pcl [H]

Synonym: Sama_3382

Alternate gene names: 119776514

Gene position: 4008759-4010138 (Clockwise)

Preceding gene: 119776513

Following gene: 119776515

Centisome position: 93.09

GC content: 57.83

Gene sequence:

>1380_bases
GTGGATTGCATCACGATGACATCTCTGCTCTACAACGCCCTGACCCGCGGCCCAGCGGCACAGCAGCTGATAAGCTTCAA
TCACCACGATATCCTCACCGGGGCGCTGTTTACCACCCAGGTGCATCATCTGTGGCAAACCCTCAGCCAAAAAGAAGAAC
AACGCTGGCTACTCTCCTGCGAGAGTTCCGACTTGTTCGCCATTGGTCTTTGCGCCGGCTTGCTGGCGGGCAAAGAGCTG
GTACTGCCACCCAATACCCAAAGCGGCACCTTAAGTCAGCTCACCCAGAATTTCGATGCCGTGCTCTCGGATGTTCCCCT
GTGTGAAGGCCACGACTGGGTTGCCCTGAAAAAGGAAACCGCCCAAACGCCAGCCGTCTGGCCCGATGCCAAACCGACCG
GCAGCCTGACCCTGTACACCTCAGGCTCCAGTGGCGAGCCCAAACCGGTGAAAAAAACCCTCGAACAGCTCGACGCCGAA
GTCAGCACCCTCGAGGCCACGTTTGCTGCTGCCCTGCCCCATTGCAGCGTTATCTCCACCGTTTCTCATCAGCACATCTA
TGGCCTGCTGTTTAAAATTCTCTGGCCTCTGGCAGCCGGACGGCCGTTTTTAAGCGATTTGGTAGAATACCCAGAGACCC
TGAGTTACTACACGGCGCTGCTGCCCAACCTGTGCCTTATCAGCAGCCCGGCACAGCTCAGTCGTCTGCCGGATGCGCTG
GATAATGAGCGCCAATTTCACTCACCCAGCCTGGTGTTTTCCTCGGGCGGCCCATTGAGTGAAGACGCTGCCAGGGGGAT
CCAGAAGGTTTATGGCAGCCTGCCCATCGAGGTCTATGGGAGCACAGAGACCGGCGGCATTGGCTGGCGCAGACAAGCCT
CGGCCGCCGAGGCCTGGCAGGTCTTCCCCGGCATAAAGATAGCCAGCGCCGACGATGGCGCCCTGCTGCTGCGCTCGCCT
TACCTCGACAATCCGAACCAAATCTTGCGCTGCGAAGATAAAATTGCCATTGATGACAATGGCCGTTTTGTGCTGCAGGG
CAGACTGGATCGCATCGTTAAAATTGAAGAAAAGCGTTTGTCGCTGGTGCAGATGGAATCCCTGCTGGAGAGTCATCCGC
TGGTAAGCCGCGCCGCGCTGGTGCTGCTGACCGAACCCCGCACCCAGCTCGGCGCCGTAGTGGAGCTGTCGGATGAGGGT
AAGGCGCTGCTTGCCGAAGAGGGTAAACTGGCCCTCAACAATCAACTGAAGGCCCATCTATTAACCGAATTTGAACGGGT
TACCCTGCCGAGGCGTTGGCGTTACCCCTGCGAGCTGCCGCTCAACCAGCAGGGCAAGCGCGTATATCAAACTTTGATTG
AGCTGTTCACCCATGATTAA

Upstream 100 bases:

>100_bases
GACCCTGTATAACGGCCTGATTGCCTACATTCTTATGGGCATGCTGGCTGGCGGGGAGTGGTTGTACCGCACTTTTATTT
TGAAAAAAGGTGCCTGACAT

Downstream 100 bases:

>100_bases
GTCATTGCTGCCGCACGTGCTCTCCCGCGAAGAGACAGATACAGAGCTGAAACTCAGGCTCGCCATCGATGCCCACCTGC
CGTTTTTCGATGGCCACTTT

Product: hypothetical protein

Products: NA

Alternate protein names: 4CL; 4-coumaroyl-CoA synthase [H]

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MDCITMTSLLYNALTRGPAAQQLISFNHHDILTGALFTTQVHHLWQTLSQKEEQRWLLSCESSDLFAIGLCAGLLAGKEL
VLPPNTQSGTLSQLTQNFDAVLSDVPLCEGHDWVALKKETAQTPAVWPDAKPTGSLTLYTSGSSGEPKPVKKTLEQLDAE
VSTLEATFAAALPHCSVISTVSHQHIYGLLFKILWPLAAGRPFLSDLVEYPETLSYYTALLPNLCLISSPAQLSRLPDAL
DNERQFHSPSLVFSSGGPLSEDAARGIQKVYGSLPIEVYGSTETGGIGWRRQASAAEAWQVFPGIKIASADDGALLLRSP
YLDNPNQILRCEDKIAIDDNGRFVLQGRLDRIVKIEEKRLSLVQMESLLESHPLVSRAALVLLTEPRTQLGAVVELSDEG
KALLAEEGKLALNNQLKAHLLTEFERVTLPRRWRYPCELPLNQQGKRVYQTLIELFTHD

Sequences:

>Translated_459_residues
MDCITMTSLLYNALTRGPAAQQLISFNHHDILTGALFTTQVHHLWQTLSQKEEQRWLLSCESSDLFAIGLCAGLLAGKEL
VLPPNTQSGTLSQLTQNFDAVLSDVPLCEGHDWVALKKETAQTPAVWPDAKPTGSLTLYTSGSSGEPKPVKKTLEQLDAE
VSTLEATFAAALPHCSVISTVSHQHIYGLLFKILWPLAAGRPFLSDLVEYPETLSYYTALLPNLCLISSPAQLSRLPDAL
DNERQFHSPSLVFSSGGPLSEDAARGIQKVYGSLPIEVYGSTETGGIGWRRQASAAEAWQVFPGIKIASADDGALLLRSP
YLDNPNQILRCEDKIAIDDNGRFVLQGRLDRIVKIEEKRLSLVQMESLLESHPLVSRAALVLLTEPRTQLGAVVELSDEG
KALLAEEGKLALNNQLKAHLLTEFERVTLPRRWRYPCELPLNQQGKRVYQTLIELFTHD
>Mature_459_residues
MDCITMTSLLYNALTRGPAAQQLISFNHHDILTGALFTTQVHHLWQTLSQKEEQRWLLSCESSDLFAIGLCAGLLAGKEL
VLPPNTQSGTLSQLTQNFDAVLSDVPLCEGHDWVALKKETAQTPAVWPDAKPTGSLTLYTSGSSGEPKPVKKTLEQLDAE
VSTLEATFAAALPHCSVISTVSHQHIYGLLFKILWPLAAGRPFLSDLVEYPETLSYYTALLPNLCLISSPAQLSRLPDAL
DNERQFHSPSLVFSSGGPLSEDAARGIQKVYGSLPIEVYGSTETGGIGWRRQASAAEAWQVFPGIKIASADDGALLLRSP
YLDNPNQILRCEDKIAIDDNGRFVLQGRLDRIVKIEEKRLSLVQMESLLESHPLVSRAALVLLTEPRTQLGAVVELSDEG
KALLAEEGKLALNNQLKAHLLTEFERVTLPRRWRYPCELPLNQQGKRVYQTLIELFTHD

Specific function: Converts p-coumaric acid into p-coumaryl CoA. This is necessary for the activation of the photoactive yellow protein (PYP) chromophore [H]

COG id: COG0365

COG function: function code I; Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012743
- InterPro:   IPR020845
- InterPro:   IPR000873 [H]

Pfam domain/function: PF00501 AMP-binding [H]

EC number: =6.2.1.12 [H]

Molecular weight: Translated: 50595; Mature: 50595

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDCITMTSLLYNALTRGPAAQQLISFNHHDILTGALFTTQVHHLWQTLSQKEEQRWLLSC
CCHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
ESSDLFAIGLCAGLLAGKELVLPPNTQSGTLSQLTQNFDAVLSDVPLCEGHDWVALKKET
CCCCEEHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
AQTPAVWPDAKPTGSLTLYTSGSSGEPKPVKKTLEQLDAEVSTLEATFAAALPHCSVIST
CCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
VSHQHIYGLLFKILWPLAAGRPFLSDLVEYPETLSYYTALLPNLCLISSPAQLSRLPDAL
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHEECCCHHHHHCCHHH
DNERQFHSPSLVFSSGGPLSEDAARGIQKVYGSLPIEVYGSTETGGIGWRRQASAAEAWQ
CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHH
VFPGIKIASADDGALLLRSPYLDNPNQILRCEDKIAIDDNGRFVLQGRLDRIVKIEEKRL
HCCCCEEECCCCCEEEEECCCCCCCCCEEEECCCEEECCCCCEEEEECHHHHHHHHHHHH
SLVQMESLLESHPLVSRAALVLLTEPRTQLGAVVELSDEGKALLAEEGKLALNNQLKAHL
HHHHHHHHHHHCCCHHHEEEEEEECCCHHHCEEEEECCCCCEEEECCCCEEECHHHHHHH
LTEFERVTLPRRWRYPCELPLNQQGKRVYQTLIELFTHD
HHHHHHHCCCHHCCCCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDCITMTSLLYNALTRGPAAQQLISFNHHDILTGALFTTQVHHLWQTLSQKEEQRWLLSC
CCHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
ESSDLFAIGLCAGLLAGKELVLPPNTQSGTLSQLTQNFDAVLSDVPLCEGHDWVALKKET
CCCCEEHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
AQTPAVWPDAKPTGSLTLYTSGSSGEPKPVKKTLEQLDAEVSTLEATFAAALPHCSVIST
CCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
VSHQHIYGLLFKILWPLAAGRPFLSDLVEYPETLSYYTALLPNLCLISSPAQLSRLPDAL
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHEECCCHHHHHCCHHH
DNERQFHSPSLVFSSGGPLSEDAARGIQKVYGSLPIEVYGSTETGGIGWRRQASAAEAWQ
CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHH
VFPGIKIASADDGALLLRSPYLDNPNQILRCEDKIAIDDNGRFVLQGRLDRIVKIEEKRL
HCCCCEEECCCCCEEEEECCCCCCCCCEEEECCCEEECCCCCEEEEECHHHHHHHHHHHH
SLVQMESLLESHPLVSRAALVLLTEPRTQLGAVVELSDEGKALLAEEGKLALNNQLKAHL
HHHHHHHHHHHCCCHHHEEEEEEECCCHHHCEEEEECCCCCEEEECCCCEEECHHHHHHH
LTEFERVTLPRRWRYPCELPLNQQGKRVYQTLIELFTHD
HHHHHHHCCCHHCCCCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA