| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776513
Identifier: 119776513
GI number: 119776513
Start: 4008207
End: 4008755
Strand: Direct
Name: 119776513
Synonym: Sama_3381
Alternate gene names: NA
Gene position: 4008207-4008755 (Clockwise)
Preceding gene: 119776512
Following gene: 119776514
Centisome position: 93.08
GC content: 57.19
Gene sequence:
>549_bases ATGCGTGCTATTGAGGTATTGACGGCAGCGCTGCTGCTCGTCTACCCGCTGGCGGTTTGGCTTGGGCTGAATTATCTACC GCCGGGTATGCTGGCTGGTCTGCTGTGTCTGCTGCTGTTGCTGCGACTGGTGTTAAAGCGCCAGCAACTCAAAGCCATGG TGCTGCCGCTGCTGGCCGGAGTGATTCTTACCGCCGGTAGCCTGCTGGCCAAGCGCCAGGACTGGCTGCTCTACTACCCG ATAGTCATTAACCTGACCATGCTCGGGGTATTCGGCCAGTCACTGCTGAGCGGCCCCAGTATGGTTGAGCGACTGGCGCG CCTCGGCGAGCCTGAACTGCCCAACGAAGCCATACCTTATCTTCGCAGGGTGACGGCGCTTTGGTGCCTGCTTTTTGTGG TAAACGGCGGCATGGCCTTTTATACCGCCCACTTTACCAGCCTGGAAATCTGGACCCTGTATAACGGCCTGATTGCCTAC ATTCTTATGGGCATGCTGGCTGGCGGGGAGTGGTTGTACCGCACTTTTATTTTGAAAAAAGGTGCCTGA
Upstream 100 bases:
>100_bases TGCAACAGCTCACCGGCAAAAAAATTAAACCCGAAGAGTTCAAATCAGTACGCACCGTGGCAGATGTGGTTAACGCCATC GAGGCTTTGGTTCAGGGCTG
Downstream 100 bases:
>100_bases CATGTGGATTGCATCACGATGACATCTCTGCTCTACAACGCCCTGACCCGCGGCCCAGCGGCACAGCAGCTGATAAGCTT CAATCACCACGATATCCTCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 182; Mature: 182
Protein sequence:
>182_residues MRAIEVLTAALLLVYPLAVWLGLNYLPPGMLAGLLCLLLLLRLVLKRQQLKAMVLPLLAGVILTAGSLLAKRQDWLLYYP IVINLTMLGVFGQSLLSGPSMVERLARLGEPELPNEAIPYLRRVTALWCLLFVVNGGMAFYTAHFTSLEIWTLYNGLIAY ILMGMLAGGEWLYRTFILKKGA
Sequences:
>Translated_182_residues MRAIEVLTAALLLVYPLAVWLGLNYLPPGMLAGLLCLLLLLRLVLKRQQLKAMVLPLLAGVILTAGSLLAKRQDWLLYYP IVINLTMLGVFGQSLLSGPSMVERLARLGEPELPNEAIPYLRRVTALWCLLFVVNGGMAFYTAHFTSLEIWTLYNGLIAY ILMGMLAGGEWLYRTFILKKGA >Mature_182_residues MRAIEVLTAALLLVYPLAVWLGLNYLPPGMLAGLLCLLLLLRLVLKRQQLKAMVLPLLAGVILTAGSLLAKRQDWLLYYP IVINLTMLGVFGQSLLSGPSMVERLARLGEPELPNEAIPYLRRVTALWCLLFVVNGGMAFYTAHFTSLEIWTLYNGLIAY ILMGMLAGGEWLYRTFILKKGA
Specific function: Unknown
COG id: COG4648
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20235; Mature: 20235
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAIEVLTAALLLVYPLAVWLGLNYLPPGMLAGLLCLLLLLRLVLKRQQLKAMVLPLLAG CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VILTAGSLLAKRQDWLLYYPIVINLTMLGVFGQSLLSGPSMVERLARLGEPELPNEAIPY HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHH LRRVTALWCLLFVVNGGMAFYTAHFTSLEIWTLYNGLIAYILMGMLAGGEWLYRTFILKK HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC GA CC >Mature Secondary Structure MRAIEVLTAALLLVYPLAVWLGLNYLPPGMLAGLLCLLLLLRLVLKRQQLKAMVLPLLAG CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VILTAGSLLAKRQDWLLYYPIVINLTMLGVFGQSLLSGPSMVERLARLGEPELPNEAIPY HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHH LRRVTALWCLLFVVNGGMAFYTAHFTSLEIWTLYNGLIAYILMGMLAGGEWLYRTFILKK HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC GA CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA