Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776513

Identifier: 119776513

GI number: 119776513

Start: 4008207

End: 4008755

Strand: Direct

Name: 119776513

Synonym: Sama_3381

Alternate gene names: NA

Gene position: 4008207-4008755 (Clockwise)

Preceding gene: 119776512

Following gene: 119776514

Centisome position: 93.08

GC content: 57.19

Gene sequence:

>549_bases
ATGCGTGCTATTGAGGTATTGACGGCAGCGCTGCTGCTCGTCTACCCGCTGGCGGTTTGGCTTGGGCTGAATTATCTACC
GCCGGGTATGCTGGCTGGTCTGCTGTGTCTGCTGCTGTTGCTGCGACTGGTGTTAAAGCGCCAGCAACTCAAAGCCATGG
TGCTGCCGCTGCTGGCCGGAGTGATTCTTACCGCCGGTAGCCTGCTGGCCAAGCGCCAGGACTGGCTGCTCTACTACCCG
ATAGTCATTAACCTGACCATGCTCGGGGTATTCGGCCAGTCACTGCTGAGCGGCCCCAGTATGGTTGAGCGACTGGCGCG
CCTCGGCGAGCCTGAACTGCCCAACGAAGCCATACCTTATCTTCGCAGGGTGACGGCGCTTTGGTGCCTGCTTTTTGTGG
TAAACGGCGGCATGGCCTTTTATACCGCCCACTTTACCAGCCTGGAAATCTGGACCCTGTATAACGGCCTGATTGCCTAC
ATTCTTATGGGCATGCTGGCTGGCGGGGAGTGGTTGTACCGCACTTTTATTTTGAAAAAAGGTGCCTGA

Upstream 100 bases:

>100_bases
TGCAACAGCTCACCGGCAAAAAAATTAAACCCGAAGAGTTCAAATCAGTACGCACCGTGGCAGATGTGGTTAACGCCATC
GAGGCTTTGGTTCAGGGCTG

Downstream 100 bases:

>100_bases
CATGTGGATTGCATCACGATGACATCTCTGCTCTACAACGCCCTGACCCGCGGCCCAGCGGCACAGCAGCTGATAAGCTT
CAATCACCACGATATCCTCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MRAIEVLTAALLLVYPLAVWLGLNYLPPGMLAGLLCLLLLLRLVLKRQQLKAMVLPLLAGVILTAGSLLAKRQDWLLYYP
IVINLTMLGVFGQSLLSGPSMVERLARLGEPELPNEAIPYLRRVTALWCLLFVVNGGMAFYTAHFTSLEIWTLYNGLIAY
ILMGMLAGGEWLYRTFILKKGA

Sequences:

>Translated_182_residues
MRAIEVLTAALLLVYPLAVWLGLNYLPPGMLAGLLCLLLLLRLVLKRQQLKAMVLPLLAGVILTAGSLLAKRQDWLLYYP
IVINLTMLGVFGQSLLSGPSMVERLARLGEPELPNEAIPYLRRVTALWCLLFVVNGGMAFYTAHFTSLEIWTLYNGLIAY
ILMGMLAGGEWLYRTFILKKGA
>Mature_182_residues
MRAIEVLTAALLLVYPLAVWLGLNYLPPGMLAGLLCLLLLLRLVLKRQQLKAMVLPLLAGVILTAGSLLAKRQDWLLYYP
IVINLTMLGVFGQSLLSGPSMVERLARLGEPELPNEAIPYLRRVTALWCLLFVVNGGMAFYTAHFTSLEIWTLYNGLIAY
ILMGMLAGGEWLYRTFILKKGA

Specific function: Unknown

COG id: COG4648

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20235; Mature: 20235

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAIEVLTAALLLVYPLAVWLGLNYLPPGMLAGLLCLLLLLRLVLKRQQLKAMVLPLLAG
CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VILTAGSLLAKRQDWLLYYPIVINLTMLGVFGQSLLSGPSMVERLARLGEPELPNEAIPY
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHH
LRRVTALWCLLFVVNGGMAFYTAHFTSLEIWTLYNGLIAYILMGMLAGGEWLYRTFILKK
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
GA
CC
>Mature Secondary Structure
MRAIEVLTAALLLVYPLAVWLGLNYLPPGMLAGLLCLLLLLRLVLKRQQLKAMVLPLLAG
CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VILTAGSLLAKRQDWLLYYPIVINLTMLGVFGQSLLSGPSMVERLARLGEPELPNEAIPY
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHH
LRRVTALWCLLFVVNGGMAFYTAHFTSLEIWTLYNGLIAYILMGMLAGGEWLYRTFILKK
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
GA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA