| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776477
Identifier: 119776477
GI number: 119776477
Start: 3972350
End: 3972652
Strand: Direct
Name: 119776477
Synonym: Sama_3345
Alternate gene names: NA
Gene position: 3972350-3972652 (Clockwise)
Preceding gene: 119776476
Following gene: 119776478
Centisome position: 92.25
GC content: 52.81
Gene sequence:
>303_bases ATGTCCTGGATTTGCAAACATTGCCACACCAAGGTGGAAGACGACGCCTTTGAAATCTGCTGGCAGTGTAATACTCCCCG TGATGGCGAAGCGCCTGCACCAAAGGCTGCAATCACTTGTTTACGTTGCCATACTCCCCTGCGTTTTGTCGGCAGAAAGG ACTTCCATGAGGGCAGCCGTTGGGGCGTACTGGGCGAGCTGGGAGAGCTTTTCGTCAGCAAAGAAGCCCTCGATATGTAT GCCTGCCAGGACTGTGGGAAGGTGGAGTTTTTTCTCACTGGTTACCAGGGCGATGACATTTAA
Upstream 100 bases:
>100_bases AGCAAGCCGCTATCATGCCTGCGCTCGACAGCGATAAGCTGGACCCCGCTCTGTGTCAGTCAGACACGGAATCAATTCAG AATGGTTTAGGAGAAACCTG
Downstream 100 bases:
>100_bases CCTCACCCAATTAATGCCAACCGGCTGGCGCCGAGATAACGGCTTAACAGCGCTATACGAGAACCCAAATGATCCCTGTG TGCCTGAGCCCCGCCCACTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 100; Mature: 99
Protein sequence:
>100_residues MSWICKHCHTKVEDDAFEICWQCNTPRDGEAPAPKAAITCLRCHTPLRFVGRKDFHEGSRWGVLGELGELFVSKEALDMY ACQDCGKVEFFLTGYQGDDI
Sequences:
>Translated_100_residues MSWICKHCHTKVEDDAFEICWQCNTPRDGEAPAPKAAITCLRCHTPLRFVGRKDFHEGSRWGVLGELGELFVSKEALDMY ACQDCGKVEFFLTGYQGDDI >Mature_99_residues SWICKHCHTKVEDDAFEICWQCNTPRDGEAPAPKAAITCLRCHTPLRFVGRKDFHEGSRWGVLGELGELFVSKEALDMYA CQDCGKVEFFLTGYQGDDI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11331; Mature: 11200
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
8.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 10.0 %Cys+Met (Translated Protein) 8.1 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 9.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSWICKHCHTKVEDDAFEICWQCNTPRDGEAPAPKAAITCLRCHTPLRFVGRKDFHEGSR CCCCHHHCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCC WGVLGELGELFVSKEALDMYACQDCGKVEFFLTGYQGDDI CCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC >Mature Secondary Structure SWICKHCHTKVEDDAFEICWQCNTPRDGEAPAPKAAITCLRCHTPLRFVGRKDFHEGSR CCCHHHCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCC WGVLGELGELFVSKEALDMYACQDCGKVEFFLTGYQGDDI CCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA