Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776476

Identifier: 119776476

GI number: 119776476

Start: 3971850

End: 3972350

Strand: Direct

Name: 119776476

Synonym: Sama_3344

Alternate gene names: NA

Gene position: 3971850-3972350 (Clockwise)

Preceding gene: 119776475

Following gene: 119776477

Centisome position: 92.24

GC content: 53.89

Gene sequence:

>501_bases
ATGGAATACGCACAGGAATACACCAAGCGGGAGAAATGGACGCGGGTGTGCCTGTATTCGCTGCTTGGATTGCTGCTGAT
TATGGGCCAGAGGTTGTGGTTCAATCCATTTATCGAGGACTTCGCCAATCGCCCCCACTGCTATCAGCTTGCTGGCCTGA
ATGGTGCCGACTATTTCTGGCAGCTCATCTTTGTGGGTATTCCAGTACTGGCGCTTTTACCCATGCTGTTCACTCTGGTG
CCGATGGCCATCCGGGGGCTGATGCAAGGTCGCTTTCCCCCTGAGGGCGAGAAAGTATATAAACCCACATTGGTGGTCCG
AGGCGCCAAAGCCTATGTCAAACCTGTACTCTACCTGACCATAACGGTTGCCTGCGTCCTCCTGATCTGGTGGGGGCATC
AGCAAGCCGCTATCATGCCTGCGCTCGACAGCGATAAGCTGGACCCCGCTCTGTGTCAGTCAGACACGGAATCAATTCAG
AATGGTTTAGGAGAAACCTGA

Upstream 100 bases:

>100_bases
CAGACAGGCCATTTTGCCAGGTTTATATTGCCCCCAAGCTTGAAAAGCTGGCGCGGCTATTGGAGGATGACAAGTCGTGA
TTTAACCGCAAGGGACCGCC

Downstream 100 bases:

>100_bases
TGTCCTGGATTTGCAAACATTGCCACACCAAGGTGGAAGACGACGCCTTTGAAATCTGCTGGCAGTGTAATACTCCCCGT
GATGGCGAAGCGCCTGCACC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MEYAQEYTKREKWTRVCLYSLLGLLLIMGQRLWFNPFIEDFANRPHCYQLAGLNGADYFWQLIFVGIPVLALLPMLFTLV
PMAIRGLMQGRFPPEGEKVYKPTLVVRGAKAYVKPVLYLTITVACVLLIWWGHQQAAIMPALDSDKLDPALCQSDTESIQ
NGLGET

Sequences:

>Translated_166_residues
MEYAQEYTKREKWTRVCLYSLLGLLLIMGQRLWFNPFIEDFANRPHCYQLAGLNGADYFWQLIFVGIPVLALLPMLFTLV
PMAIRGLMQGRFPPEGEKVYKPTLVVRGAKAYVKPVLYLTITVACVLLIWWGHQQAAIMPALDSDKLDPALCQSDTESIQ
NGLGET
>Mature_166_residues
MEYAQEYTKREKWTRVCLYSLLGLLLIMGQRLWFNPFIEDFANRPHCYQLAGLNGADYFWQLIFVGIPVLALLPMLFTLV
PMAIRGLMQGRFPPEGEKVYKPTLVVRGAKAYVKPVLYLTITVACVLLIWWGHQQAAIMPALDSDKLDPALCQSDTESIQ
NGLGET

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18855; Mature: 18855

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYAQEYTKREKWTRVCLYSLLGLLLIMGQRLWFNPFIEDFANRPHCYQLAGLNGADYFW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHCCCCCEEEECCCCCHHHHH
QLIFVGIPVLALLPMLFTLVPMAIRGLMQGRFPPEGEKVYKPTLVVRGAKAYVKPVLYLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHEEECHHHHHHHHHHHH
ITVACVLLIWWGHQQAAIMPALDSDKLDPALCQSDTESIQNGLGET
HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEYAQEYTKREKWTRVCLYSLLGLLLIMGQRLWFNPFIEDFANRPHCYQLAGLNGADYFW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHCCCCCEEEECCCCCHHHHH
QLIFVGIPVLALLPMLFTLVPMAIRGLMQGRFPPEGEKVYKPTLVVRGAKAYVKPVLYLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHEEECHHHHHHHHHHHH
ITVACVLLIWWGHQQAAIMPALDSDKLDPALCQSDTESIQNGLGET
HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA