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The map label for this gene is ompS2 [H]

Identifier: 119776468

GI number: 119776468

Start: 3964229

End: 3965383

Strand: Direct

Name: ompS2 [H]

Synonym: Sama_3336

Alternate gene names: 119776468

Gene position: 3964229-3965383 (Clockwise)

Preceding gene: 119776467

Following gene: 119776471

Centisome position: 92.06

GC content: 55.84

Gene sequence:

>1155_bases
ATGAAAAAATCACAATTGGCACTCTTACTGCCACTGCTTATTGGCGCCTCGTCCGTCAATGCCATGGAGCTATACAACGA
CAACAAAAACAGCCTCGGCCTCACCGGCTGGCTCGGTTTTAACGCCCTCTACGATGGCGACGAAACTGCGGTGAACGACA
ACCTGTCGCAGCTGCGCTTTACCTTCGAGCGGGAAGAGCGCAACGGCTGGCGTGCCTATGCGGTGACCGAATGGGGCGTG
AATATCGTTTCAGGCAACGAAGATTTGGTCATGCAGGGCGGCAAGCTGAATGCGGAAAAGAGCGGTGACTTCCTCAATAA
CCGCCTGGGTTATGTGGGTCTGTCCCATGACAATTACGGCAGCCTGACTTTCGGCAAGCAGTGGGGCGCTTACTATGATG
TGGCCGGCACCACCGACCTGCCCAACGTGTTTGCCGGTTACAGCGTGGGCGCCTACGGCTTTGGTGATGGCGGCCTGACC
GGCACCGGCCGCGCCGACAGCGCCTTTTTGTACCGCAACAGCTTTGGCCCCGTCTCCATCGCGTTGCAATACGCCGCCAA
AAACAACGGCGATATCAGCGTGACCGACAGCGACGGCAATCAGATTGACGATGCCGAGCTGAGTTTTGACAACAGCTACG
GCGCCTCCGTGACCTGGGCGGTGACCGATAAATTCAGCCTGCTGGCGGGCATGAATCGCGGTGACATTAAAGGCCATATT
GGCTCCAGCGAAATCGATGAAGCCAATCAAATCATCGGCATAGGCGCCATGTACGGCAGTTACTACCATTATGCCGATGA
GCGCAAGGCCGACGGTCTTTACCTGGGTTTCAATGCCCACAAGAGTGAAAACAACGAGCAGGTAAATGGCGATTTGTACG
ATGCCACCGGCGCCGAGCTGATGCTGGCATGGCAGGCCGATAACGGCTTTGTGCCCATGGCAGTGCTGACGTATCTCGAT
TTGGACACAGATGAGAGTACCCCCATCACCGGTAACTGGACCCGCCGCTTCGCCATGGTGGGGCTGCACTACAGATACAG
CCTGGATACTGTGATGTTTTTCGAAGCCAAACTCGACTTCTCCGACATGGACGACAAGTCGCTGGAAGCGCTGGAAGACA
ACCAGTTTGCGGTGGGCATTAACTACTTTTTCTGA

Upstream 100 bases:

>100_bases
TCCAAGAAAAACGAACTGCGCCTGCAACAGGCCTGAACACAACACACATAAGGCCTCGTCTTGTGGCGAGGCCACAACAA
AGAAATTCAAAGGTGGAATC

Downstream 100 bases:

>100_bases
TTACGCTCCACAAAAAGCGGCGTGACACACGCCTTGATGACCGCCACGTCCGGGGCCTTCGCCATGAAGCCCCGGGTATC
AGCGCCGACCTCCACTTCCA

Product: outer membrane porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MKKSQLALLLPLLIGASSVNAMELYNDNKNSLGLTGWLGFNALYDGDETAVNDNLSQLRFTFEREERNGWRAYAVTEWGV
NIVSGNEDLVMQGGKLNAEKSGDFLNNRLGYVGLSHDNYGSLTFGKQWGAYYDVAGTTDLPNVFAGYSVGAYGFGDGGLT
GTGRADSAFLYRNSFGPVSIALQYAAKNNGDISVTDSDGNQIDDAELSFDNSYGASVTWAVTDKFSLLAGMNRGDIKGHI
GSSEIDEANQIIGIGAMYGSYYHYADERKADGLYLGFNAHKSENNEQVNGDLYDATGAELMLAWQADNGFVPMAVLTYLD
LDTDESTPITGNWTRRFAMVGLHYRYSLDTVMFFEAKLDFSDMDDKSLEALEDNQFAVGINYFF

Sequences:

>Translated_384_residues
MKKSQLALLLPLLIGASSVNAMELYNDNKNSLGLTGWLGFNALYDGDETAVNDNLSQLRFTFEREERNGWRAYAVTEWGV
NIVSGNEDLVMQGGKLNAEKSGDFLNNRLGYVGLSHDNYGSLTFGKQWGAYYDVAGTTDLPNVFAGYSVGAYGFGDGGLT
GTGRADSAFLYRNSFGPVSIALQYAAKNNGDISVTDSDGNQIDDAELSFDNSYGASVTWAVTDKFSLLAGMNRGDIKGHI
GSSEIDEANQIIGIGAMYGSYYHYADERKADGLYLGFNAHKSENNEQVNGDLYDATGAELMLAWQADNGFVPMAVLTYLD
LDTDESTPITGNWTRRFAMVGLHYRYSLDTVMFFEAKLDFSDMDDKSLEALEDNQFAVGINYFF
>Mature_384_residues
MKKSQLALLLPLLIGASSVNAMELYNDNKNSLGLTGWLGFNALYDGDETAVNDNLSQLRFTFEREERNGWRAYAVTEWGV
NIVSGNEDLVMQGGKLNAEKSGDFLNNRLGYVGLSHDNYGSLTFGKQWGAYYDVAGTTDLPNVFAGYSVGAYGFGDGGLT
GTGRADSAFLYRNSFGPVSIALQYAAKNNGDISVTDSDGNQIDDAELSFDNSYGASVTWAVTDKFSLLAGMNRGDIKGHI
GSSEIDEANQIIGIGAMYGSYYHYADERKADGLYLGFNAHKSENNEQVNGDLYDATGAELMLAWQADNGFVPMAVLTYLD
LDTDESTPITGNWTRRFAMVGLHYRYSLDTVMFFEAKLDFSDMDDKSLEALEDNQFAVGINYFF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1786436, Length=211, Percent_Identity=31.2796208530806, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 42087; Mature: 42087

Theoretical pI: Translated: 4.10; Mature: 4.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSQLALLLPLLIGASSVNAMELYNDNKNSLGLTGWLGFNALYDGDETAVNDNLSQLRF
CCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCCEEECCCCCCCCCCHHHEEE
TFEREERNGWRAYAVTEWGVNIVSGNEDLVMQGGKLNAEKSGDFLNNRLGYVGLSHDNYG
EEEECCCCCEEEEEEEECCEEEEECCCCEEEECCCCCCCCCCCHHHCCCCEEEECCCCCC
SLTFGKQWGAYYDVAGTTDLPNVFAGYSVGAYGFGDGGLTGTGRADSAFLYRNSFGPVSI
CEEECCCCCCEEECCCCCCCCHHHCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCCEEE
ALQYAAKNNGDISVTDSDGNQIDDAELSFDNSYGASVTWAVTDKFSLLAGMNRGDIKGHI
EEEEEECCCCCEEEECCCCCCCCCCEEEECCCCCCEEEEEEECCCHHHHCCCCCCCEECC
GSSEIDEANQIIGIGAMYGSYYHYADERKADGLYLGFNAHKSENNEQVNGDLYDATGAEL
CCCCCCCCCEEEEEEHHHCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCEE
MLAWQADNGFVPMAVLTYLDLDTDESTPITGNWTRRFAMVGLHYRYSLDTVMFFEAKLDF
EEEEECCCCEEHEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEECCEEEEEEEECCC
SDMDDKSLEALEDNQFAVGINYFF
CCCCCCHHHHHCCCCEEEEEEECC
>Mature Secondary Structure
MKKSQLALLLPLLIGASSVNAMELYNDNKNSLGLTGWLGFNALYDGDETAVNDNLSQLRF
CCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCCEEECCCCCCCCCCHHHEEE
TFEREERNGWRAYAVTEWGVNIVSGNEDLVMQGGKLNAEKSGDFLNNRLGYVGLSHDNYG
EEEECCCCCEEEEEEEECCEEEEECCCCEEEECCCCCCCCCCCHHHCCCCEEEECCCCCC
SLTFGKQWGAYYDVAGTTDLPNVFAGYSVGAYGFGDGGLTGTGRADSAFLYRNSFGPVSI
CEEECCCCCCEEECCCCCCCCHHHCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCCEEE
ALQYAAKNNGDISVTDSDGNQIDDAELSFDNSYGASVTWAVTDKFSLLAGMNRGDIKGHI
EEEEEECCCCCEEEECCCCCCCCCCEEEECCCCCCEEEEEEECCCHHHHCCCCCCCEECC
GSSEIDEANQIIGIGAMYGSYYHYADERKADGLYLGFNAHKSENNEQVNGDLYDATGAEL
CCCCCCCCCEEEEEEHHHCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCEE
MLAWQADNGFVPMAVLTYLDLDTDESTPITGNWTRRFAMVGLHYRYSLDTVMFFEAKLDF
EEEEECCCCEEHEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEECCEEEEEEEECCC
SDMDDKSLEALEDNQFAVGINYFF
CCCCCCHHHHHCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]