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The map label for this gene is yfdE [H]

Identifier: 119776432

GI number: 119776432

Start: 3926693

End: 3927862

Strand: Direct

Name: yfdE [H]

Synonym: Sama_3300

Alternate gene names: 119776432

Gene position: 3926693-3927862 (Clockwise)

Preceding gene: 119776430

Following gene: 119776434

Centisome position: 91.19

GC content: 60.09

Gene sequence:

>1170_bases
ATGAAACAACCGCTCAAAGGCCTGCGGGTATTGGATCTCTCCCGGGTGCTGGCCGGTCCCTGGTGCAGCCAGTTACTGGC
CGATATGGGTGCCGAGGTTATCAAGATTGAACATCCGGACGGTGGCGACGATACCCGCCACTGGGGCCCGCCCTATGCAG
GGGGCCACACACAGGGGGATGCCGCCTACTTCCTTGCCGCCAACCGGGGCAAAAAATCCCTGCTGCTGGATTTGAAAAAT
CCTCATGATGTGGCACAAATTCAAAAGCTTGCCCGCCACAGCGACATACTGCTGGAAAACTTCAAAGTGGGTGGGCTGGC
AAAATACGGCCTGGATTATGGCAGCCTCAAGGCCATGAACCCCCAACTGGTGTATTGCTCAATCACCGGCTTTGGCCAGA
GCGGCCCGGACGCACCCCGCGCAGGCTACGACTTTATGATCCAGGCCATGGGTGGCCTGATGAGCCTCACCGGCGCGGCT
GATGATGGCGGCGAGCCCATGAAAACCGGCGTTGCCATTACCGACCTCTTTACCGGGCTTTATGCCGCCAATGCCATTCT
GGCGGCCATAGTGGCGCGCCAGTCCACGGGCCTTGGCTGCCATATCGATATGGCGCTGTTCGATGTACAGCTCGCCATGC
TGGCCAATCAGGCGCAAAACTTCCTCGCCAGCGGCCAAAATCCACCCCGGCTTGGCAATGCCCACCCTAATATCGTGCCC
TATCAGGCCTTTGCCTGCGCCGATGGCCACCTGATTTTGGCCGTGGGCAACGATGGCCAGTTTGCCCGTTTCTGCGAGCT
GGCAGGATTGCACGAACTGCCCCATGACAGCCGCTTTGCCACCAATGCCGGGCGGGTAAGGCACCGCGAAACCCTGTTGC
CACTGATAAAGGCCGCCATGCTGACCAAATCCAAGGGCGAGTGGCTGGCGCTTTTGAACGATGCCGGGGTGCCCGCCGGG
CCCATCAATACTGTGTCTGAAGCCCTTGATGAGCCCCAGGCCCAACACCGGCAAATGCAAATCGAGCGGGACTTTAACGG
CGAAAGGCTGCCCTTTGTAGGCAGCCCGGTGAAAATGGATGGAGAGGCGCTCAATTCGCCCCTGCCGCCGCCACGACTTG
GGGAGCATCAGCAGGAGCTGCTGGCCTGGCTCGATGGGCTTGAGTCGTAA

Upstream 100 bases:

>100_bases
ACCTTGATGACTGACCTTGCAGACTAGGGAGCAGCAGGGATAAAGTCAATAGCGGCGCAAATTCCAACAAAAAGATGCTG
TAAACCGTTAAGGAAACTCC

Downstream 100 bases:

>100_bases
CGAGCTCACGGTCTACGGTTTACGGTTTACGGTCTATTTCCGCTCGCGGCGGCGCAGGCAGGCACCCAATGCCAGCAGCG
CCAGCGCACCTGCGCCCAGG

Product: acyl-CoA transferase/carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MKQPLKGLRVLDLSRVLAGPWCSQLLADMGAEVIKIEHPDGGDDTRHWGPPYAGGHTQGDAAYFLAANRGKKSLLLDLKN
PHDVAQIQKLARHSDILLENFKVGGLAKYGLDYGSLKAMNPQLVYCSITGFGQSGPDAPRAGYDFMIQAMGGLMSLTGAA
DDGGEPMKTGVAITDLFTGLYAANAILAAIVARQSTGLGCHIDMALFDVQLAMLANQAQNFLASGQNPPRLGNAHPNIVP
YQAFACADGHLILAVGNDGQFARFCELAGLHELPHDSRFATNAGRVRHRETLLPLIKAAMLTKSKGEWLALLNDAGVPAG
PINTVSEALDEPQAQHRQMQIERDFNGERLPFVGSPVKMDGEALNSPLPPPRLGEHQQELLAWLDGLES

Sequences:

>Translated_389_residues
MKQPLKGLRVLDLSRVLAGPWCSQLLADMGAEVIKIEHPDGGDDTRHWGPPYAGGHTQGDAAYFLAANRGKKSLLLDLKN
PHDVAQIQKLARHSDILLENFKVGGLAKYGLDYGSLKAMNPQLVYCSITGFGQSGPDAPRAGYDFMIQAMGGLMSLTGAA
DDGGEPMKTGVAITDLFTGLYAANAILAAIVARQSTGLGCHIDMALFDVQLAMLANQAQNFLASGQNPPRLGNAHPNIVP
YQAFACADGHLILAVGNDGQFARFCELAGLHELPHDSRFATNAGRVRHRETLLPLIKAAMLTKSKGEWLALLNDAGVPAG
PINTVSEALDEPQAQHRQMQIERDFNGERLPFVGSPVKMDGEALNSPLPPPRLGEHQQELLAWLDGLES
>Mature_389_residues
MKQPLKGLRVLDLSRVLAGPWCSQLLADMGAEVIKIEHPDGGDDTRHWGPPYAGGHTQGDAAYFLAANRGKKSLLLDLKN
PHDVAQIQKLARHSDILLENFKVGGLAKYGLDYGSLKAMNPQLVYCSITGFGQSGPDAPRAGYDFMIQAMGGLMSLTGAA
DDGGEPMKTGVAITDLFTGLYAANAILAAIVARQSTGLGCHIDMALFDVQLAMLANQAQNFLASGQNPPRLGNAHPNIVP
YQAFACADGHLILAVGNDGQFARFCELAGLHELPHDSRFATNAGRVRHRETLLPLIKAAMLTKSKGEWLALLNDAGVPAG
PINTVSEALDEPQAQHRQMQIERDFNGERLPFVGSPVKMDGEALNSPLPPPRLGEHQQELLAWLDGLES

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=380, Percent_Identity=41.0526315789474, Blast_Score=314, Evalue=9e-86,
Organism=Homo sapiens, GI300863124, Length=407, Percent_Identity=39.0663390663391, Blast_Score=301, Evalue=6e-82,
Organism=Homo sapiens, GI13376042, Length=407, Percent_Identity=36.1179361179361, Blast_Score=263, Evalue=3e-70,
Organism=Homo sapiens, GI300863126, Length=380, Percent_Identity=35, Blast_Score=252, Evalue=3e-67,
Organism=Homo sapiens, GI266456254, Length=393, Percent_Identity=27.735368956743, Blast_Score=122, Evalue=8e-28,
Organism=Homo sapiens, GI42794625, Length=393, Percent_Identity=27.735368956743, Blast_Score=122, Evalue=8e-28,
Organism=Homo sapiens, GI266458393, Length=271, Percent_Identity=31.3653136531365, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI266458397, Length=259, Percent_Identity=31.2741312741313, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI266458395, Length=148, Percent_Identity=36.4864864864865, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI42822893, Length=148, Percent_Identity=36.4864864864865, Blast_Score=96, Evalue=5e-20,
Organism=Escherichia coli, GI87082093, Length=362, Percent_Identity=38.9502762430939, Blast_Score=275, Evalue=5e-75,
Organism=Escherichia coli, GI1788717, Length=405, Percent_Identity=28.8888888888889, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1786222, Length=346, Percent_Identity=27.1676300578035, Blast_Score=90, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI115535051, Length=348, Percent_Identity=26.1494252873563, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI32564160, Length=223, Percent_Identity=30.9417040358744, Blast_Score=98, Evalue=7e-21,
Organism=Drosophila melanogaster, GI24648431, Length=386, Percent_Identity=41.7098445595855, Blast_Score=308, Evalue=5e-84,
Organism=Drosophila melanogaster, GI24585488, Length=350, Percent_Identity=28.2857142857143, Blast_Score=117, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41718; Mature: 41718

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQPLKGLRVLDLSRVLAGPWCSQLLADMGAEVIKIEHPDGGDDTRHWGPPYAGGHTQGD
CCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
AAYFLAANRGKKSLLLDLKNPHDVAQIQKLARHSDILLENFKVGGLAKYGLDYGSLKAMN
EEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCEECCC
PQLVYCSITGFGQSGPDAPRAGYDFMIQAMGGLMSLTGAADDGGEPMKTGVAITDLFTGL
CEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCCCCHHHCCHHHHHHHHH
YAANAILAAIVARQSTGLGCHIDMALFDVQLAMLANQAQNFLASGQNPPRLGNAHPNIVP
HHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
YQAFACADGHLILAVGNDGQFARFCELAGLHELPHDSRFATNAGRVRHRETLLPLIKAAM
CEEEEECCCEEEEEECCCCCHHHHHHHHCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
LTKSKGEWLALLNDAGVPAGPINTVSEALDEPQAQHRQMQIERDFNGERLPFVGSPVKMD
HHCCCCCEEEEEECCCCCCCCHHHHHHHHCCHHHHHHHEEHCCCCCCCCCCCCCCCCCCC
GEALNSPLPPPRLGEHQQELLAWLDGLES
HHHHCCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKQPLKGLRVLDLSRVLAGPWCSQLLADMGAEVIKIEHPDGGDDTRHWGPPYAGGHTQGD
CCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
AAYFLAANRGKKSLLLDLKNPHDVAQIQKLARHSDILLENFKVGGLAKYGLDYGSLKAMN
EEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCEECCC
PQLVYCSITGFGQSGPDAPRAGYDFMIQAMGGLMSLTGAADDGGEPMKTGVAITDLFTGL
CEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCCCCHHHCCHHHHHHHHH
YAANAILAAIVARQSTGLGCHIDMALFDVQLAMLANQAQNFLASGQNPPRLGNAHPNIVP
HHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
YQAFACADGHLILAVGNDGQFARFCELAGLHELPHDSRFATNAGRVRHRETLLPLIKAAM
CEEEEECCCEEEEEECCCCCHHHHHHHHCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
LTKSKGEWLALLNDAGVPAGPINTVSEALDEPQAQHRQMQIERDFNGERLPFVGSPVKMD
HHCCCCCEEEEEECCCCCCCCHHHHHHHHCCHHHHHHHEEHCCCCCCCCCCCCCCCCCCC
GEALNSPLPPPRLGEHQQELLAWLDGLES
HHHHCCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]