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The map label for this gene is ydhC [H]

Identifier: 119776425

GI number: 119776425

Start: 3913328

End: 3914098

Strand: Direct

Name: ydhC [H]

Synonym: Sama_3293

Alternate gene names: 119776425

Gene position: 3913328-3914098 (Clockwise)

Preceding gene: 119776423

Following gene: 119776426

Centisome position: 90.88

GC content: 60.44

Gene sequence:

>771_bases
ATGAGCCAGAGTACCCCGAAAGATCTCAGCACTGAACGCGGCGCCAGCGAGCGCGGCGCGGCCACCCTGGCCGATCAGAT
CCTGAGTGCGATTCAAACTGCCATCATCAAGGGCGAACTGGCCCCGGGCAGCAAGATAAATGAGCAGGCACTGGCCGCCC
AATTCGGCATCAGCCGAGGCCCCACCCGTGAAGCCCTGCAAACCCTCGAGCGCCAACGTTTGGTGGTACGCATGCCCCAT
GTGGGTGCCCGGGTGGCACAGCTGTCGGTGGAAGAGCTGAACGACCTCTATGACCTGCGCTCCACCCTGGAAGCCATGGC
CTGTCGCCTCGCAGCCGAACGCATTACTGAAGCACAACTTGTCGAATTGCAGGCGCTGCTCGAACGTCAGGAAGCCGCGC
TCAAACAGGGCGACACCTATTTTCAGGAGCAGGGTGACGTGGACTTCCACTACCAAATCATCCGCGCCAGCGGCAACAAA
CACCTGCAGGAAACCCTGATGGGCGGCCTGTACCACCTGCTGCGCATGTACCGTTATCAGTGCAGCAACCACCAGCGCCC
AAGCCGGGCAATAGCCGAACACAGACGCATAGTCGAGGCCATTGCCGAGCGTGATGGCGAGCTGGCGGCGCTGTTGATGC
AGCGCCATATCGAACAGGGACGCCGCAACACAGAGGCACGTCTTAAAGAACTCAAGGCCGAGGCAAGCGCCCGTGAGCAC
AGCTCGCTTACCTTCGCCAATACACAGCAATTAAAGGGAGAGACAGCATGA

Upstream 100 bases:

>100_bases
TACGTCTACGTCAACGGATTGTTGACAATCCACCGCAAGAGGTCTAATTTTCAACCATTGTCAGCGACAGGGCCGCAGCC
AAAGCGGCAACAAGCACCCA

Downstream 100 bases:

>100_bases
CCCACAGCGCAGGCAAGCGTTTTCGCGACGCACTGGCACGCTCCAAGCCACTGCAAATCGTAGGTACCACCAACGCCTAT
TTCGCTCTGATGGCCGAAAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MSQSTPKDLSTERGASERGAATLADQILSAIQTAIIKGELAPGSKINEQALAAQFGISRGPTREALQTLERQRLVVRMPH
VGARVAQLSVEELNDLYDLRSTLEAMACRLAAERITEAQLVELQALLERQEAALKQGDTYFQEQGDVDFHYQIIRASGNK
HLQETLMGGLYHLLRMYRYQCSNHQRPSRAIAEHRRIVEAIAERDGELAALLMQRHIEQGRRNTEARLKELKAEASAREH
SSLTFANTQQLKGETA

Sequences:

>Translated_256_residues
MSQSTPKDLSTERGASERGAATLADQILSAIQTAIIKGELAPGSKINEQALAAQFGISRGPTREALQTLERQRLVVRMPH
VGARVAQLSVEELNDLYDLRSTLEAMACRLAAERITEAQLVELQALLERQEAALKQGDTYFQEQGDVDFHYQIIRASGNK
HLQETLMGGLYHLLRMYRYQCSNHQRPSRAIAEHRRIVEAIAERDGELAALLMQRHIEQGRRNTEARLKELKAEASAREH
SSLTFANTQQLKGETA
>Mature_255_residues
SQSTPKDLSTERGASERGAATLADQILSAIQTAIIKGELAPGSKINEQALAAQFGISRGPTREALQTLERQRLVVRMPHV
GARVAQLSVEELNDLYDLRSTLEAMACRLAAERITEAQLVELQALLERQEAALKQGDTYFQEQGDVDFHYQIIRASGNKH
LQETLMGGLYHLLRMYRYQCSNHQRPSRAIAEHRRIVEAIAERDGELAALLMQRHIEQGRRNTEARLKELKAEASAREHS
SLTFANTQQLKGETA

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=197, Percent_Identity=27.9187817258883, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87082149, Length=201, Percent_Identity=29.8507462686567, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI48994961, Length=198, Percent_Identity=30.8080808080808, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 28640; Mature: 28509

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQSTPKDLSTERGASERGAATLADQILSAIQTAIIKGELAPGSKINEQALAAQFGISRG
CCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCC
PTREALQTLERQRLVVRMPHVGARVAQLSVEELNDLYDLRSTLEAMACRLAAERITEAQL
CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VELQALLERQEAALKQGDTYFQEQGDVDFHYQIIRASGNKHLQETLMGGLYHLLRMYRYQ
HHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHH
CSNHQRPSRAIAEHRRIVEAIAERDGELAALLMQRHIEQGRRNTEARLKELKAEASAREH
HCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SSLTFANTQQLKGETA
CCCCCCCHHHHCCCCC
>Mature Secondary Structure 
SQSTPKDLSTERGASERGAATLADQILSAIQTAIIKGELAPGSKINEQALAAQFGISRG
CCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCC
PTREALQTLERQRLVVRMPHVGARVAQLSVEELNDLYDLRSTLEAMACRLAAERITEAQL
CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VELQALLERQEAALKQGDTYFQEQGDVDFHYQIIRASGNKHLQETLMGGLYHLLRMYRYQ
HHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHH
CSNHQRPSRAIAEHRRIVEAIAERDGELAALLMQRHIEQGRRNTEARLKELKAEASAREH
HCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SSLTFANTQQLKGETA
CCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]