Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
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Accession | NC_008700 |
Length | 4,306,142 |
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The map label for this gene is katG1
Identifier: 119776402
GI number: 119776402
Start: 3884878
End: 3887034
Strand: Direct
Name: katG1
Synonym: Sama_3270
Alternate gene names: 119776402
Gene position: 3884878-3887034 (Clockwise)
Preceding gene: 119776401
Following gene: 119776403
Centisome position: 90.22
GC content: 57.95
Gene sequence:
>2157_bases ATGAGTAATGAAGGCAAATGTCCGGTAATGCACGGCGGTGCAACCTCTGCCACCCAGGCCGACAATCATTGGTGGCCCAA AGCCCTGAACCTCGACATACTCCACCAGCACGACAGTAAAACCAACCCCATGGCACCGGGCTTTAATTACCGGGAAGCCC TGAAAGGCCTCGATGTGGAGGCACTCAAACAAGATCTCAAAGCCCTGATGACCGACAGCCAGGCCTGGTGGCCAGCGGAC TGGGGCCATTATGGCGGCCTGATGATCCGCATGGCGTGGCACTCGGCCGGCACCTATCGCATTGCCGACGGTCGTGGTGG TGGCGGCCATGGTGCACAGCGCTTTGCCCCACTCAATTCCTGGCCCGACAATGGCAATCTCGACAAGGCCAGGCGCCTGC TGTGGCCCATCAAACAGAAATACGGCAACAAAGTGAGCTGGGCCGACTTGATGATTTTGGCAGGCAACATGGCGTATGAA TCCATGGGGCTGAAAACCTTCGGCTTTGCCTTTGGTCGTGAAGACATCTGGCACCCCGAGAAAGACACCTACTGGGGCGC AGAAAAAGAATGGTTGGCCCCCAGCGGCGGCGCCAACAGTCGCTATTCCGGGGTTCGCGATCTGCAAAACCCACTGGCAG CAGTGATGATGGGGCTGATTTATGTCAACCCGGAAGGGGTCGATGGCAATCCAGACCCACTGAAAACCGCCCAGGATATG CGCGTGACCTTCGCCCGAATGGCGATGAATGACGAAGAAACTGTGGCACTCACCGCCGGTGGCCATACCGTGGGTAAAGC CCATGGTAATGGTAACGCCGCCAATCTGGGGCCTGAACCTGAAGCCGCGCCTTTGGAAGAGCAAGGCTTTGGCTGGATGA ATCATCAAAGTCGCGGCATAGGCCGCAACACAGTCACCAGCGGAATCGAAGGCGCCTGGACCACCCACCCCACCCGTTGG GACAACGGTTATTTCCATCTGCTGTTCAGCTACGACTGGGCACTCACCAAGAGTCCGGCAGGCGCGTGGCAGTGGGAGCC GGTGAACATCAGGGAAGAAGACAAGCCAGTGGATGTGGAAGACCCCAACATCCGCAGCAACCCCATGATGACAGACGCCG ACATGGCGCTGAAGATGGACCCGGATTACCGCCGCATCGCCGAAAGATTCTTCCACGATCCCGACTATTTTGCCGACACC TTTGCCAGGGCCTGGTTCAAGTTGACTCACAGAGACATGGGCCCCAAATCCCGCTACTTTGGTCCGGATGTGCCAGCAGA AGACTTGATTTGGCAGGACCCGGTACCCAAGGGTAACAGTCAATATGACCCCGAGGCGGTTAAGGCACGCATCGCCGGTA CGGGGCTTGGCGCCGCCGAGCTGGTCGCCACCGCATGGGACAGCGCCAGAACCTATAGAAACTCAGATAAGCGCGGCGGA GCCAACGGCGCACGCATCCGCTTGTTGCCGCAAAAAGACTGGGTAGCCAACGAGCCCGCCAGACTGGCCAGAGTGCTGGA GCTGCTTACCCCCATCGCCAGCGACATGGGCGTCAGCATTGCCGACACCCTGGTGCTGGGTGGCAATCTTGGTGTCGAGC TGGCGGCCAAAGCCGCCGGTTTCAATATCAAGGTGCCTTTTATCCCCGGTCGTGGTGATGCCAGTCAGGCACAAACCGAC ATCGACTCCTTTGAGGTGCTTGAGCCACTGGCCGATGGCTTCCGTAACTGGCAAAAGCAGGACTTTGTGGTCACGCCGGA AGAAATGCTGCTCGACCGGGCACAACTCATGGGACTCTCAGCGCCGGAAATGACAGTGCTGATTGGTGGCATGCGCGCCA TGGCGGTTAACCATGGTGGAACCACACATGGGGTGCTGACCGACAATCCCGGCAGCCTCAGTAATGACTTTTTCGTTAAC CTCACCGATATGAGTTATCGCTGGAAACCGGTCGCCAACAATCTCTATGAGATCTGCGATAGGGCAAGTGGCCAGAAAAA ATGGACCGCCACCCGGGTCGATTTGGTGTTTGGCTCCAACTCTGTATTGCGCGCCTACGCCGAGTACTATGCCCAGGACG ACAACAAAGAGACCTTCGTAAAGGACTTTGTCACCGCCTGGTGCAAGGTGATGAATGCCGACCGCTTCGATGCCTAG
Upstream 100 bases:
>100_bases GGCCAATCGCAGCTGAAGACTCAGATGCCAAGCTTCTGTCGATGCCATGTTTTCTGATGGAAGCCCTTAAACAGGGAATG GTACTAAGGAGAGCAGCAAC
Downstream 100 bases:
>100_bases GCCAACGATGCCATTCTGAACTGACAACGCCTCCGTAAGGAGGCGTTTCATCATCTACAGAGGCACTTGGGCTTGGGCAT TGGCTGGGGTACAATCGAGC
Product: catalase
Products: NA
Alternate protein names: CP 1; Peroxidase/catalase 1
Number of amino acids: Translated: 718; Mature: 717
Protein sequence:
>718_residues MSNEGKCPVMHGGATSATQADNHWWPKALNLDILHQHDSKTNPMAPGFNYREALKGLDVEALKQDLKALMTDSQAWWPAD WGHYGGLMIRMAWHSAGTYRIADGRGGGGHGAQRFAPLNSWPDNGNLDKARRLLWPIKQKYGNKVSWADLMILAGNMAYE SMGLKTFGFAFGREDIWHPEKDTYWGAEKEWLAPSGGANSRYSGVRDLQNPLAAVMMGLIYVNPEGVDGNPDPLKTAQDM RVTFARMAMNDEETVALTAGGHTVGKAHGNGNAANLGPEPEAAPLEEQGFGWMNHQSRGIGRNTVTSGIEGAWTTHPTRW DNGYFHLLFSYDWALTKSPAGAWQWEPVNIREEDKPVDVEDPNIRSNPMMTDADMALKMDPDYRRIAERFFHDPDYFADT FARAWFKLTHRDMGPKSRYFGPDVPAEDLIWQDPVPKGNSQYDPEAVKARIAGTGLGAAELVATAWDSARTYRNSDKRGG ANGARIRLLPQKDWVANEPARLARVLELLTPIASDMGVSIADTLVLGGNLGVELAAKAAGFNIKVPFIPGRGDASQAQTD IDSFEVLEPLADGFRNWQKQDFVVTPEEMLLDRAQLMGLSAPEMTVLIGGMRAMAVNHGGTTHGVLTDNPGSLSNDFFVN LTDMSYRWKPVANNLYEICDRASGQKKWTATRVDLVFGSNSVLRAYAEYYAQDDNKETFVKDFVTAWCKVMNADRFDA
Sequences:
>Translated_718_residues MSNEGKCPVMHGGATSATQADNHWWPKALNLDILHQHDSKTNPMAPGFNYREALKGLDVEALKQDLKALMTDSQAWWPAD WGHYGGLMIRMAWHSAGTYRIADGRGGGGHGAQRFAPLNSWPDNGNLDKARRLLWPIKQKYGNKVSWADLMILAGNMAYE SMGLKTFGFAFGREDIWHPEKDTYWGAEKEWLAPSGGANSRYSGVRDLQNPLAAVMMGLIYVNPEGVDGNPDPLKTAQDM RVTFARMAMNDEETVALTAGGHTVGKAHGNGNAANLGPEPEAAPLEEQGFGWMNHQSRGIGRNTVTSGIEGAWTTHPTRW DNGYFHLLFSYDWALTKSPAGAWQWEPVNIREEDKPVDVEDPNIRSNPMMTDADMALKMDPDYRRIAERFFHDPDYFADT FARAWFKLTHRDMGPKSRYFGPDVPAEDLIWQDPVPKGNSQYDPEAVKARIAGTGLGAAELVATAWDSARTYRNSDKRGG ANGARIRLLPQKDWVANEPARLARVLELLTPIASDMGVSIADTLVLGGNLGVELAAKAAGFNIKVPFIPGRGDASQAQTD IDSFEVLEPLADGFRNWQKQDFVVTPEEMLLDRAQLMGLSAPEMTVLIGGMRAMAVNHGGTTHGVLTDNPGSLSNDFFVN LTDMSYRWKPVANNLYEICDRASGQKKWTATRVDLVFGSNSVLRAYAEYYAQDDNKETFVKDFVTAWCKVMNADRFDA >Mature_717_residues SNEGKCPVMHGGATSATQADNHWWPKALNLDILHQHDSKTNPMAPGFNYREALKGLDVEALKQDLKALMTDSQAWWPADW GHYGGLMIRMAWHSAGTYRIADGRGGGGHGAQRFAPLNSWPDNGNLDKARRLLWPIKQKYGNKVSWADLMILAGNMAYES MGLKTFGFAFGREDIWHPEKDTYWGAEKEWLAPSGGANSRYSGVRDLQNPLAAVMMGLIYVNPEGVDGNPDPLKTAQDMR VTFARMAMNDEETVALTAGGHTVGKAHGNGNAANLGPEPEAAPLEEQGFGWMNHQSRGIGRNTVTSGIEGAWTTHPTRWD NGYFHLLFSYDWALTKSPAGAWQWEPVNIREEDKPVDVEDPNIRSNPMMTDADMALKMDPDYRRIAERFFHDPDYFADTF ARAWFKLTHRDMGPKSRYFGPDVPAEDLIWQDPVPKGNSQYDPEAVKARIAGTGLGAAELVATAWDSARTYRNSDKRGGA NGARIRLLPQKDWVANEPARLARVLELLTPIASDMGVSIADTLVLGGNLGVELAAKAAGFNIKVPFIPGRGDASQAQTDI DSFEVLEPLADGFRNWQKQDFVVTPEEMLLDRAQLMGLSAPEMTVLIGGMRAMAVNHGGTTHGVLTDNPGSLSNDFFVNL TDMSYRWKPVANNLYEICDRASGQKKWTATRVDLVFGSNSVLRAYAEYYAQDDNKETFVKDFVTAWCKVMNADRFDA
Specific function: Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
COG id: COG0376
COG function: function code P; Catalase (peroxidase I)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peroxidase family. Peroxidase/catalase subfamily
Homologues:
Organism=Escherichia coli, GI1790378, Length=725, Percent_Identity=56.1379310344828, Blast_Score=787, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): KATG1_SHEAM (A1SAR6)
Other databases:
- EMBL: CP000507 - RefSeq: YP_929142.1 - ProteinModelPortal: A1SAR6 - SMR: A1SAR6 - STRING: A1SAR6 - PeroxiBase: 3656 - GeneID: 4605517 - GenomeReviews: CP000507_GR - KEGG: saz:Sama_3270 - NMPDR: fig|326297.7.peg.3081 - eggNOG: COG0376 - HOGENOM: HBG285610 - OMA: WPNALNL - PhylomeDB: A1SAR6 - ProtClustDB: PRK15061 - HAMAP: MF_01961 - InterPro: IPR000763 - InterPro: IPR010255 - InterPro: IPR002016 - InterPro: IPR019794 - PRINTS: PR00460 - PRINTS: PR00458 - TIGRFAMs: TIGR00198
Pfam domain/function: PF00141 peroxidase; SSF48113 Peroxidase_super
EC number: =1.11.1.6; =1.11.1.7
Molecular weight: Translated: 79500; Mature: 79369
Theoretical pI: Translated: 5.52; Mature: 5.52
Prosite motif: PS00435 PEROXIDASE_1; PS00436 PEROXIDASE_2; PS50873 PEROXIDASE_4
Important sites: ACT_SITE 94-94
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNEGKCPVMHGGATSATQADNHWWPKALNLDILHQHDSKTNPMAPGFNYREALKGLDVE CCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCHH ALKQDLKALMTDSQAWWPADWGHYGGLMIRMAWHSAGTYRIADGRGGGGHGAQRFAPLNS HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCHHHCCCCCC WPDNGNLDKARRLLWPIKQKYGNKVSWADLMILAGNMAYESMGLKTFGFAFGREDIWHPE CCCCCCHHHHHHHHHHHHHHHCCCCCHHEEEEEECCHHHHHCCCHHHHHHHCCCCCCCCC KDTYWGAEKEWLAPSGGANSRYSGVRDLQNPLAAVMMGLIYVNPEGVDGNPDPLKTAQDM CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHHH RVTFARMAMNDEETVALTAGGHTVGKAHGNGNAANLGPEPEAAPLEEQGFGWMNHQSRGI HHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCC GRNTVTSGIEGAWTTHPTRWDNGYFHLLFSYDWALTKSPAGAWQWEPVNIREEDKPVDVE CCHHHHCCCCCCCCCCCCCCCCCEEEEEEEECEEEECCCCCCEECCCCCCCCCCCCCCCC DPNIRSNPMMTDADMALKMDPDYRRIAERFFHDPDYFADTFARAWFKLTHRDMGPKSRYF CCCCCCCCCEECCCCEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC GPDVPAEDLIWQDPVPKGNSQYDPEAVKARIAGTGLGAAELVATAWDSARTYRNSDKRGG CCCCCHHHCEECCCCCCCCCCCCHHHHHEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCC ANGARIRLLPQKDWVANEPARLARVLELLTPIASDMGVSIADTLVLGGNLGVELAAKAAG CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHEEECCCCCEEEEHCCCC FNIKVPFIPGRGDASQAQTDIDSFEVLEPLADGFRNWQKQDFVVTPEEMLLDRAQLMGLS CEEEEEEECCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHCCC APEMTVLIGGMRAMAVNHGGTTHGVLTDNPGSLSNDFFVNLTDMSYRWKPVANNLYEICD CCCEEEEECCEEEEEEECCCCCCCEEECCCCCCCCCEEEEEECCCEECCHHHHHHHHHHH RASGQKKWTATRVDLVFGSNSVLRAYAEYYAQDDNKETFVKDFVTAWCKVMNADRFDA CCCCCCCEEEEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SNEGKCPVMHGGATSATQADNHWWPKALNLDILHQHDSKTNPMAPGFNYREALKGLDVE CCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCHH ALKQDLKALMTDSQAWWPADWGHYGGLMIRMAWHSAGTYRIADGRGGGGHGAQRFAPLNS HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCHHHCCCCCC WPDNGNLDKARRLLWPIKQKYGNKVSWADLMILAGNMAYESMGLKTFGFAFGREDIWHPE CCCCCCHHHHHHHHHHHHHHHCCCCCHHEEEEEECCHHHHHCCCHHHHHHHCCCCCCCCC KDTYWGAEKEWLAPSGGANSRYSGVRDLQNPLAAVMMGLIYVNPEGVDGNPDPLKTAQDM CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHHH RVTFARMAMNDEETVALTAGGHTVGKAHGNGNAANLGPEPEAAPLEEQGFGWMNHQSRGI HHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCC GRNTVTSGIEGAWTTHPTRWDNGYFHLLFSYDWALTKSPAGAWQWEPVNIREEDKPVDVE CCHHHHCCCCCCCCCCCCCCCCCEEEEEEEECEEEECCCCCCEECCCCCCCCCCCCCCCC DPNIRSNPMMTDADMALKMDPDYRRIAERFFHDPDYFADTFARAWFKLTHRDMGPKSRYF CCCCCCCCCEECCCCEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC GPDVPAEDLIWQDPVPKGNSQYDPEAVKARIAGTGLGAAELVATAWDSARTYRNSDKRGG CCCCCHHHCEECCCCCCCCCCCCHHHHHEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCC ANGARIRLLPQKDWVANEPARLARVLELLTPIASDMGVSIADTLVLGGNLGVELAAKAAG CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHEEECCCCCEEEEHCCCC FNIKVPFIPGRGDASQAQTDIDSFEVLEPLADGFRNWQKQDFVVTPEEMLLDRAQLMGLS CEEEEEEECCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHCCC APEMTVLIGGMRAMAVNHGGTTHGVLTDNPGSLSNDFFVNLTDMSYRWKPVANNLYEICD CCCEEEEECCEEEEEEECCCCCCCEEECCCCCCCCCEEEEEECCCEECCHHHHHHHHHHH RASGQKKWTATRVDLVFGSNSVLRAYAEYYAQDDNKETFVKDFVTAWCKVMNADRFDA CCCCCCCEEEEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA