Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
---|---|
Accession | NC_008700 |
Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119776361
Identifier: 119776361
GI number: 119776361
Start: 3822710
End: 3823711
Strand: Direct
Name: 119776361
Synonym: Sama_3229
Alternate gene names: NA
Gene position: 3822710-3823711 (Clockwise)
Preceding gene: 119776358
Following gene: 119776362
Centisome position: 88.77
GC content: 41.52
Gene sequence:
>1002_bases ATGATTGATAGTTTGCTAGCTGAAAAAGTGCAATTAGGTTTCGATATTGCCACCAGCGTTACCATTATCACGGCATTGGC GACCTGGTGGCTTGAAAGTCGTCGTCGGGTCAAAAACGAACGGGAAGTGGGTATCAACGAGAGAGCGCGCGCTTCATCGC TGGCAAAAGTTCAATCAATTCTCGAAGAATTTGAAAATGCGTTCAGTCAGATTGTGCTTAATGGCACCAAGTTTGAGCGG CCGATAGATATTCGTCTGACAGATAAGGGCGATGGAATAAACTTCTCGAAGCTCGCGTTACACATCGCAAAAAACAGACC TTTTATTCAAACACAGCTTGAATCCTTAAGGGCCTTTATTGAAGGTACCGACCACTATTACGAAACGATTCAAAAGCGTC GCTACACCCTGCTACCCGTGCTCGATTCTATAAAAGACGGACAGAAAATCAGAGAAGACTTTTTCCGTGATATCGAGGAG ATCGCGCAAATACATAACAGATTAGGTTCAGGATGGTCTGCACTGCTTAAGGAGTATGTTGATTTACAAAATATTGTGAA TGAAACCCTTCACGATCAAACATTATCGAAAGAAGACAGTATCAAAGCGCTGATTTCCAACAGTGATTTTAAAGACAGAG CATTTTCGATACTGTTGGATATAGATTATTTTTCTTGGGTTAGCAGCTTTGTGCCGAGTGGCGAAGAAGAAAATTATAAA GATGCCATCAGTAATAATACAGCAGACCAAATAAGGGATACTGTCTTTGCCACATATATCAATTTAACATCATCAAGCGT TACCAAAGGTGATGAACTCATGGCCCAGATCCTTTATGGCACTTCCTGTGAAGTTCAGGCTGCACGCATTGAATGTAAAG ATATCCTTATCAAGCTCAGTGCACTGTCACATAAACTGCTCTCCAACAAAGAAGACAGACCTTTGAAAGAGATAATAACC GACTACGAAGAAGTACTGGGTAAAGATACGTTAATTCGCTGA
Upstream 100 bases:
>100_bases AATATACGATGCACTAACGCAGGCAACTCGATGAGATACTTGCATCTGATGCAATGATTTTATCAACATCGCCATTATCA ATGGAAAAGGAAATGGAATT
Downstream 100 bases:
>100_bases TGCTGTGATATCGACTCAGATTTACGTTGATTGCTTGCTGACTCAACGTGGATCTGAGTTGAATAGCGTTCAGGTTGCAT CATCCACATTGTTAATATGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 333; Mature: 333
Protein sequence:
>333_residues MIDSLLAEKVQLGFDIATSVTIITALATWWLESRRRVKNEREVGINERARASSLAKVQSILEEFENAFSQIVLNGTKFER PIDIRLTDKGDGINFSKLALHIAKNRPFIQTQLESLRAFIEGTDHYYETIQKRRYTLLPVLDSIKDGQKIREDFFRDIEE IAQIHNRLGSGWSALLKEYVDLQNIVNETLHDQTLSKEDSIKALISNSDFKDRAFSILLDIDYFSWVSSFVPSGEEENYK DAISNNTADQIRDTVFATYINLTSSSVTKGDELMAQILYGTSCEVQAARIECKDILIKLSALSHKLLSNKEDRPLKEIIT DYEEVLGKDTLIR
Sequences:
>Translated_333_residues MIDSLLAEKVQLGFDIATSVTIITALATWWLESRRRVKNEREVGINERARASSLAKVQSILEEFENAFSQIVLNGTKFER PIDIRLTDKGDGINFSKLALHIAKNRPFIQTQLESLRAFIEGTDHYYETIQKRRYTLLPVLDSIKDGQKIREDFFRDIEE IAQIHNRLGSGWSALLKEYVDLQNIVNETLHDQTLSKEDSIKALISNSDFKDRAFSILLDIDYFSWVSSFVPSGEEENYK DAISNNTADQIRDTVFATYINLTSSSVTKGDELMAQILYGTSCEVQAARIECKDILIKLSALSHKLLSNKEDRPLKEIIT DYEEVLGKDTLIR >Mature_333_residues MIDSLLAEKVQLGFDIATSVTIITALATWWLESRRRVKNEREVGINERARASSLAKVQSILEEFENAFSQIVLNGTKFER PIDIRLTDKGDGINFSKLALHIAKNRPFIQTQLESLRAFIEGTDHYYETIQKRRYTLLPVLDSIKDGQKIREDFFRDIEE IAQIHNRLGSGWSALLKEYVDLQNIVNETLHDQTLSKEDSIKALISNSDFKDRAFSILLDIDYFSWVSSFVPSGEEENYK DAISNNTADQIRDTVFATYINLTSSSVTKGDELMAQILYGTSCEVQAARIECKDILIKLSALSHKLLSNKEDRPLKEIIT DYEEVLGKDTLIR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38006; Mature: 38006
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDSLLAEKVQLGFDIATSVTIITALATWWLESRRRVKNEREVGINERARASSLAKVQSI CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH LEEFENAFSQIVLNGTKFERPIDIRLTDKGDGINFSKLALHIAKNRPFIQTQLESLRAFI HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH EGTDHYYETIQKRRYTLLPVLDSIKDGQKIREDFFRDIEEIAQIHNRLGSGWSALLKEYV CCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH DLQNIVNETLHDQTLSKEDSIKALISNSDFKDRAFSILLDIDYFSWVSSFVPSGEEENYK HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHEEHHHHHHHHHHCCCCCCCCHH DAISNNTADQIRDTVFATYINLTSSSVTKGDELMAQILYGTSCEVQAARIECKDILIKLS HHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH ALSHKLLSNKEDRPLKEIITDYEEVLGKDTLIR HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MIDSLLAEKVQLGFDIATSVTIITALATWWLESRRRVKNEREVGINERARASSLAKVQSI CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH LEEFENAFSQIVLNGTKFERPIDIRLTDKGDGINFSKLALHIAKNRPFIQTQLESLRAFI HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH EGTDHYYETIQKRRYTLLPVLDSIKDGQKIREDFFRDIEEIAQIHNRLGSGWSALLKEYV CCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH DLQNIVNETLHDQTLSKEDSIKALISNSDFKDRAFSILLDIDYFSWVSSFVPSGEEENYK HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHEEHHHHHHHHHHCCCCCCCCHH DAISNNTADQIRDTVFATYINLTSSSVTKGDELMAQILYGTSCEVQAARIECKDILIKLS HHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH ALSHKLLSNKEDRPLKEIITDYEEVLGKDTLIR HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA