Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776361

Identifier: 119776361

GI number: 119776361

Start: 3822710

End: 3823711

Strand: Direct

Name: 119776361

Synonym: Sama_3229

Alternate gene names: NA

Gene position: 3822710-3823711 (Clockwise)

Preceding gene: 119776358

Following gene: 119776362

Centisome position: 88.77

GC content: 41.52

Gene sequence:

>1002_bases
ATGATTGATAGTTTGCTAGCTGAAAAAGTGCAATTAGGTTTCGATATTGCCACCAGCGTTACCATTATCACGGCATTGGC
GACCTGGTGGCTTGAAAGTCGTCGTCGGGTCAAAAACGAACGGGAAGTGGGTATCAACGAGAGAGCGCGCGCTTCATCGC
TGGCAAAAGTTCAATCAATTCTCGAAGAATTTGAAAATGCGTTCAGTCAGATTGTGCTTAATGGCACCAAGTTTGAGCGG
CCGATAGATATTCGTCTGACAGATAAGGGCGATGGAATAAACTTCTCGAAGCTCGCGTTACACATCGCAAAAAACAGACC
TTTTATTCAAACACAGCTTGAATCCTTAAGGGCCTTTATTGAAGGTACCGACCACTATTACGAAACGATTCAAAAGCGTC
GCTACACCCTGCTACCCGTGCTCGATTCTATAAAAGACGGACAGAAAATCAGAGAAGACTTTTTCCGTGATATCGAGGAG
ATCGCGCAAATACATAACAGATTAGGTTCAGGATGGTCTGCACTGCTTAAGGAGTATGTTGATTTACAAAATATTGTGAA
TGAAACCCTTCACGATCAAACATTATCGAAAGAAGACAGTATCAAAGCGCTGATTTCCAACAGTGATTTTAAAGACAGAG
CATTTTCGATACTGTTGGATATAGATTATTTTTCTTGGGTTAGCAGCTTTGTGCCGAGTGGCGAAGAAGAAAATTATAAA
GATGCCATCAGTAATAATACAGCAGACCAAATAAGGGATACTGTCTTTGCCACATATATCAATTTAACATCATCAAGCGT
TACCAAAGGTGATGAACTCATGGCCCAGATCCTTTATGGCACTTCCTGTGAAGTTCAGGCTGCACGCATTGAATGTAAAG
ATATCCTTATCAAGCTCAGTGCACTGTCACATAAACTGCTCTCCAACAAAGAAGACAGACCTTTGAAAGAGATAATAACC
GACTACGAAGAAGTACTGGGTAAAGATACGTTAATTCGCTGA

Upstream 100 bases:

>100_bases
AATATACGATGCACTAACGCAGGCAACTCGATGAGATACTTGCATCTGATGCAATGATTTTATCAACATCGCCATTATCA
ATGGAAAAGGAAATGGAATT

Downstream 100 bases:

>100_bases
TGCTGTGATATCGACTCAGATTTACGTTGATTGCTTGCTGACTCAACGTGGATCTGAGTTGAATAGCGTTCAGGTTGCAT
CATCCACATTGTTAATATGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MIDSLLAEKVQLGFDIATSVTIITALATWWLESRRRVKNEREVGINERARASSLAKVQSILEEFENAFSQIVLNGTKFER
PIDIRLTDKGDGINFSKLALHIAKNRPFIQTQLESLRAFIEGTDHYYETIQKRRYTLLPVLDSIKDGQKIREDFFRDIEE
IAQIHNRLGSGWSALLKEYVDLQNIVNETLHDQTLSKEDSIKALISNSDFKDRAFSILLDIDYFSWVSSFVPSGEEENYK
DAISNNTADQIRDTVFATYINLTSSSVTKGDELMAQILYGTSCEVQAARIECKDILIKLSALSHKLLSNKEDRPLKEIIT
DYEEVLGKDTLIR

Sequences:

>Translated_333_residues
MIDSLLAEKVQLGFDIATSVTIITALATWWLESRRRVKNEREVGINERARASSLAKVQSILEEFENAFSQIVLNGTKFER
PIDIRLTDKGDGINFSKLALHIAKNRPFIQTQLESLRAFIEGTDHYYETIQKRRYTLLPVLDSIKDGQKIREDFFRDIEE
IAQIHNRLGSGWSALLKEYVDLQNIVNETLHDQTLSKEDSIKALISNSDFKDRAFSILLDIDYFSWVSSFVPSGEEENYK
DAISNNTADQIRDTVFATYINLTSSSVTKGDELMAQILYGTSCEVQAARIECKDILIKLSALSHKLLSNKEDRPLKEIIT
DYEEVLGKDTLIR
>Mature_333_residues
MIDSLLAEKVQLGFDIATSVTIITALATWWLESRRRVKNEREVGINERARASSLAKVQSILEEFENAFSQIVLNGTKFER
PIDIRLTDKGDGINFSKLALHIAKNRPFIQTQLESLRAFIEGTDHYYETIQKRRYTLLPVLDSIKDGQKIREDFFRDIEE
IAQIHNRLGSGWSALLKEYVDLQNIVNETLHDQTLSKEDSIKALISNSDFKDRAFSILLDIDYFSWVSSFVPSGEEENYK
DAISNNTADQIRDTVFATYINLTSSSVTKGDELMAQILYGTSCEVQAARIECKDILIKLSALSHKLLSNKEDRPLKEIIT
DYEEVLGKDTLIR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38006; Mature: 38006

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDSLLAEKVQLGFDIATSVTIITALATWWLESRRRVKNEREVGINERARASSLAKVQSI
CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LEEFENAFSQIVLNGTKFERPIDIRLTDKGDGINFSKLALHIAKNRPFIQTQLESLRAFI
HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
EGTDHYYETIQKRRYTLLPVLDSIKDGQKIREDFFRDIEEIAQIHNRLGSGWSALLKEYV
CCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
DLQNIVNETLHDQTLSKEDSIKALISNSDFKDRAFSILLDIDYFSWVSSFVPSGEEENYK
HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHEEHHHHHHHHHHCCCCCCCCHH
DAISNNTADQIRDTVFATYINLTSSSVTKGDELMAQILYGTSCEVQAARIECKDILIKLS
HHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
ALSHKLLSNKEDRPLKEIITDYEEVLGKDTLIR
HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIDSLLAEKVQLGFDIATSVTIITALATWWLESRRRVKNEREVGINERARASSLAKVQSI
CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LEEFENAFSQIVLNGTKFERPIDIRLTDKGDGINFSKLALHIAKNRPFIQTQLESLRAFI
HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
EGTDHYYETIQKRRYTLLPVLDSIKDGQKIREDFFRDIEEIAQIHNRLGSGWSALLKEYV
CCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
DLQNIVNETLHDQTLSKEDSIKALISNSDFKDRAFSILLDIDYFSWVSSFVPSGEEENYK
HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHEEHHHHHHHHHHCCCCCCCCHH
DAISNNTADQIRDTVFATYINLTSSSVTKGDELMAQILYGTSCEVQAARIECKDILIKLS
HHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
ALSHKLLSNKEDRPLKEIITDYEEVLGKDTLIR
HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA