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The map label for this gene is nqrD [H]

Identifier: 119776110

GI number: 119776110

Start: 3547988

End: 3548614

Strand: Reverse

Name: nqrD [H]

Synonym: Sama_2978

Alternate gene names: 119776110

Gene position: 3548614-3547988 (Counterclockwise)

Preceding gene: 119776111

Following gene: 119776109

Centisome position: 82.41

GC content: 55.82

Gene sequence:

>627_bases
ATGAGCGCAGTATTATCCAATCGTGAACTCCTGATGCGCCCGGTGTTTGCCAATAACCCGGTGGCCATGCAGGTGCTGGG
GGTCTGTTCGGCCCTGGCGGTGAGTAACTCCATGCAAACCGCGCTGGTGATGACACTGGCGGTGACCTTTGTGTTGGTGT
GCTCCAACTTCTTTATCTCGCTTATTCGCGCCTTTATCCCCAACAGCGTGCGCATCATCGCCCAGATGACCATTATCGCC
TCGCTGGTGATTGTGGTGGATATGGTGCTTCAGGACGTGGCGCCGGACTTATCCAAGCAGCTGTCGGTGTTTGTGAGTCT
GATTATCACCAACTGTATTGTGATGGGCCGCGCCGAAGCCTTTGCCATGAAAGAGCCGCCACACCTGTCGGTGATGGATG
CCATCGGCAATGCCGCCGGTTACGGCTTTATCCTGTTGAGCGTCGCCTTTGTGCGCGAGCTTTTGGGCTCGGGCACCCTG
TTTGGTCACAGCATTTTGAAGACCATTGAGCAGGGCGGCTGGTATTTGCCCAATGAGATGTTCAAGCTGCCTCCCAGCGC
CTTCTTCCTGATTGGCGTGATTATCTGGGTGGTTAACATAGCTCAGCGCAAGCGCGCCAAGGCCTGA

Upstream 100 bases:

>100_bases
ACCCGCACAGGTGCGGGCGTGGCCAAGGCGGTGCAGTTCTGGTTTGGCCCCGAAGGCTTTGAAGCCGCGCTGGGCAAACT
GAAAGCGGCGGGGGTGTGAG

Downstream 100 bases:

>100_bases
GGATAACGTCATGGAACACTACATTAATCTGTTTATCCAGGCGTCATTTATCGACAACATGGCGCTGTCTTTCTTCCTGG
GCATGTGTACCTTCCTCGCG

Product: Na(+)-translocating NADH-quinone reductase subunit D

Products: NA

Alternate protein names: Na(+)-NQR subunit D; Na(+)-translocating NQR subunit D; NQR complex subunit D; NQR-1 subunit D [H]

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MSAVLSNRELLMRPVFANNPVAMQVLGVCSALAVSNSMQTALVMTLAVTFVLVCSNFFISLIRAFIPNSVRIIAQMTIIA
SLVIVVDMVLQDVAPDLSKQLSVFVSLIITNCIVMGRAEAFAMKEPPHLSVMDAIGNAAGYGFILLSVAFVRELLGSGTL
FGHSILKTIEQGGWYLPNEMFKLPPSAFFLIGVIIWVVNIAQRKRAKA

Sequences:

>Translated_208_residues
MSAVLSNRELLMRPVFANNPVAMQVLGVCSALAVSNSMQTALVMTLAVTFVLVCSNFFISLIRAFIPNSVRIIAQMTIIA
SLVIVVDMVLQDVAPDLSKQLSVFVSLIITNCIVMGRAEAFAMKEPPHLSVMDAIGNAAGYGFILLSVAFVRELLGSGTL
FGHSILKTIEQGGWYLPNEMFKLPPSAFFLIGVIIWVVNIAQRKRAKA
>Mature_207_residues
SAVLSNRELLMRPVFANNPVAMQVLGVCSALAVSNSMQTALVMTLAVTFVLVCSNFFISLIRAFIPNSVRIIAQMTIIAS
LVIVVDMVLQDVAPDLSKQLSVFVSLIITNCIVMGRAEAFAMKEPPHLSVMDAIGNAAGYGFILLSVAFVRELLGSGTLF
GHSILKTIEQGGWYLPNEMFKLPPSAFFLIGVIIWVVNIAQRKRAKA

Specific function: NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to nqrE are probably involved in the second step, the conversion of ubisemiqui

COG id: COG1347

COG function: function code C; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=200, Percent_Identity=37, Blast_Score=101, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011292 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 22546; Mature: 22415

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVLSNRELLMRPVFANNPVAMQVLGVCSALAVSNSMQTALVMTLAVTFVLVCSNFFIS
CCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIRAFIPNSVRIIAQMTIIASLVIVVDMVLQDVAPDLSKQLSVFVSLIITNCIVMGRAEA
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHH
FAMKEPPHLSVMDAIGNAAGYGFILLSVAFVRELLGSGTLFGHSILKTIEQGGWYLPNEM
HHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHH
FKLPPSAFFLIGVIIWVVNIAQRKRAKA
HHCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SAVLSNRELLMRPVFANNPVAMQVLGVCSALAVSNSMQTALVMTLAVTFVLVCSNFFIS
CCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIRAFIPNSVRIIAQMTIIASLVIVVDMVLQDVAPDLSKQLSVFVSLIITNCIVMGRAEA
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHH
FAMKEPPHLSVMDAIGNAAGYGFILLSVAFVRELLGSGTLFGHSILKTIEQGGWYLPNEM
HHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHH
FKLPPSAFFLIGVIIWVVNIAQRKRAKA
HHCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA