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The map label for this gene is yciR [C]

Identifier: 119776105

GI number: 119776105

Start: 3542699

End: 3544903

Strand: Reverse

Name: yciR [C]

Synonym: Sama_2973

Alternate gene names: 119776105

Gene position: 3544903-3542699 (Counterclockwise)

Preceding gene: 119776107

Following gene: 119776104

Centisome position: 82.32

GC content: 56.51

Gene sequence:

>2205_bases
ATGTCATTGCCTGAGTTAAACCCGCTGCATGCTGCACTGGCAGGGATATTCACGGATGTCCCGCTGGTAACGCTGGAACA
GAATGTCGATCGCGCGCTGCAAACCATGACGGCGAAGCTCGACTGTGATGGCGTGTTTGTGCTCTCTGCCTCGACCCGGC
AACCCGGTGTCACCCCCCGCAATATTTACCTCAAACCCGGCAGCGTGCCGAACAATCAGGTGCGCCACTGGCCGCTGGCA
CGTATGCCGTATTTCAGACGTTTAATGCGCCAACCCAGGCTCCTTAATGTGCCCGACATCGCCAGGCTGCCCTCAGAGGC
GGCTGAAGAGAAGCGCTTTTTACGGGAGTGGCGGGTAAAGAGCCTGTTGGTGCTCACGCCGGTGCATTTTGGTGAAACCC
AGATTGCCCTGGGGGCCGTTAATTGCGAACGTGCCAGAGAGTGGTCGCAGGCCTTTATGGATGAGCTTGGCATTGCAGCC
ACCCTTATCTGTGCCGTGATGGAGCTGACCCGTATTGCCCAGGCTTTGACCGTGAGCGAGCGCCGCTATCAGGAGCTGTT
CAATCAGTTGCCGCTGGCCTGTGGACTGGTGGACAGACGTAACAGGGTAAAGCTGTTAAACAGCATAGCCCGCCAGAATC
TGCCGGTGAGCGATGGACAGGACCTGCTGGCATTGGTAAGGCCGGAGGAAGAGGCCATGCTGCAGGATACGCTGCAGGTG
GTGCGCGATGGGGTGTTGAGTCAGGCCTGGTGCGAGATTTCCATGAAGGGGCCGCTGCTGAATCAGCAATGGATAAAGCT
GAGTTTCAGCACCATGTCAGACGACCCGGGGACCTTACTGATGCTGGCGGAAGACGTGAGTGAGCGCCACCGGCTTGCCG
ATGAGCTCTCATTTCATGCCAATTACGATGCCCTCACCGGGCTGCCAAACCGTTCCCATTTCGAGGCCGTGCTCGACAAA
CTCCTGCAGCAAATACCGGAAGAGCCCATTTGCGTGGCATTTCTCGATTTGGACCAGTTTCAGGTGATCAACAATGTCAG
CGGTCATCAGGCCGGTGACAAGCTGCTGTGTCAGGTTGCACTGAGGCTCAAGCAGTTGGTGCGCAAAGGGGATACCGTGG
CCCGCCTCGGCGGCGATGAATTTGCCATCCTGATGCACTACTGCAACGAGGATACCGCCAAAGTCATTGCCCAGCGCATT
TGTACTCAATTGTTTGAACACGAGTTTTACTGGGAACACCGGCGTCACAATGTGTCAGTTTCCATGGGGGTTGCCCCCCT
CGATGCCGGGGTCAACGATATTTATGTGCTGATGAGCCGTGCCGATGCGGCTTGTCGGCTCGCCAAGGAACAGGGGCGCA
ATGGCTGGCATATCTACTGTGCCACCGACCCGAAAATGAACCGGCTTTACAGTGAGATGACCGCCTCGGTGGACATCATA
GATGCCCTGTCGCAAAACCAGTTTCAGCTTTACTATCAACTTATTGAGCCGCTTTTGAACGAGCAGGCCGGTATTCATAT
GGAAATACTGCTTCGTCTCCAGCGGCCCGATGGCAAGATGTTGTCGCCGGGGCTGTTTTTACCCGCCGCCGAGCGGTACA
ACCTGGCATCCAGGGTAGACCGATGGGTGATAGACAACCTGCTGCGCTGGGGCGGCAATCACCTGGCGTTGTGGCAGGAG
CTGGACATGGTATCGGTCAATCTGTCTGCCAATTCCCTCAGCGACCAGGAGTTTATGGAATGGCTCGAGATACGGCTGAT
GGCCGAGCCTGAGCTGGTGAGTAAACTATGTTTTGAAATCACCGAAACGGCGGCAGTCAGCCAGCTTGAACAGGCCCAGG
CCCTGATTGAGCTCTTGCGGCCCCTTGGCTGTAAACTGGCGCTGGATGACTTTGGTTCGGGCTTTTCAAGCTTTGCTTAC
CTGAAGCTGCTTGATGTGGACTTTGTCAAAATCGACGGGCAATTCGTGGTGAACCTCTGCGACAACAAGTCCGATCAAGC
CATCGTCAATGCAATCTGCCAGCTGGGCCGTGATATGGACTTCGACGTCATTGCCGAGTTTGTGGAATCTGAGGCGGTGG
GGCTGCGCCTGCGTGAGCTGGAAGTGGACTATGCCCAGGGCTATGCCATCGGCAAGCCGGAGCCGCTGGATAACCTCAGC
AGTGGCAAGCGCGTCCCCTGGCTTAGCGACTTAACTACTGGTTGA

Upstream 100 bases:

>100_bases
CAGACATAAAGGCTTACCTTTGTCTACGTCAGTAGCCAAACCTTGCCTATACTCTTGGTTGAATGCAAGTAACAGCTATT
CCGGGAAGGAAAGCGTCAAT

Downstream 100 bases:

>100_bases
GTGGCTGAGCCTGCATCCTTGCCCTGACTGCACTTGTGGTTTCCTTTCCTGTACAATGGCCGCCACTGTTTTCACCCGCC
GGAATGCCCTTGAACGCTCT

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 734; Mature: 733

Protein sequence:

>734_residues
MSLPELNPLHAALAGIFTDVPLVTLEQNVDRALQTMTAKLDCDGVFVLSASTRQPGVTPRNIYLKPGSVPNNQVRHWPLA
RMPYFRRLMRQPRLLNVPDIARLPSEAAEEKRFLREWRVKSLLVLTPVHFGETQIALGAVNCERAREWSQAFMDELGIAA
TLICAVMELTRIAQALTVSERRYQELFNQLPLACGLVDRRNRVKLLNSIARQNLPVSDGQDLLALVRPEEEAMLQDTLQV
VRDGVLSQAWCEISMKGPLLNQQWIKLSFSTMSDDPGTLLMLAEDVSERHRLADELSFHANYDALTGLPNRSHFEAVLDK
LLQQIPEEPICVAFLDLDQFQVINNVSGHQAGDKLLCQVALRLKQLVRKGDTVARLGGDEFAILMHYCNEDTAKVIAQRI
CTQLFEHEFYWEHRRHNVSVSMGVAPLDAGVNDIYVLMSRADAACRLAKEQGRNGWHIYCATDPKMNRLYSEMTASVDII
DALSQNQFQLYYQLIEPLLNEQAGIHMEILLRLQRPDGKMLSPGLFLPAAERYNLASRVDRWVIDNLLRWGGNHLALWQE
LDMVSVNLSANSLSDQEFMEWLEIRLMAEPELVSKLCFEITETAAVSQLEQAQALIELLRPLGCKLALDDFGSGFSSFAY
LKLLDVDFVKIDGQFVVNLCDNKSDQAIVNAICQLGRDMDFDVIAEFVESEAVGLRLRELEVDYAQGYAIGKPEPLDNLS
SGKRVPWLSDLTTG

Sequences:

>Translated_734_residues
MSLPELNPLHAALAGIFTDVPLVTLEQNVDRALQTMTAKLDCDGVFVLSASTRQPGVTPRNIYLKPGSVPNNQVRHWPLA
RMPYFRRLMRQPRLLNVPDIARLPSEAAEEKRFLREWRVKSLLVLTPVHFGETQIALGAVNCERAREWSQAFMDELGIAA
TLICAVMELTRIAQALTVSERRYQELFNQLPLACGLVDRRNRVKLLNSIARQNLPVSDGQDLLALVRPEEEAMLQDTLQV
VRDGVLSQAWCEISMKGPLLNQQWIKLSFSTMSDDPGTLLMLAEDVSERHRLADELSFHANYDALTGLPNRSHFEAVLDK
LLQQIPEEPICVAFLDLDQFQVINNVSGHQAGDKLLCQVALRLKQLVRKGDTVARLGGDEFAILMHYCNEDTAKVIAQRI
CTQLFEHEFYWEHRRHNVSVSMGVAPLDAGVNDIYVLMSRADAACRLAKEQGRNGWHIYCATDPKMNRLYSEMTASVDII
DALSQNQFQLYYQLIEPLLNEQAGIHMEILLRLQRPDGKMLSPGLFLPAAERYNLASRVDRWVIDNLLRWGGNHLALWQE
LDMVSVNLSANSLSDQEFMEWLEIRLMAEPELVSKLCFEITETAAVSQLEQAQALIELLRPLGCKLALDDFGSGFSSFAY
LKLLDVDFVKIDGQFVVNLCDNKSDQAIVNAICQLGRDMDFDVIAEFVESEAVGLRLRELEVDYAQGYAIGKPEPLDNLS
SGKRVPWLSDLTTG
>Mature_733_residues
SLPELNPLHAALAGIFTDVPLVTLEQNVDRALQTMTAKLDCDGVFVLSASTRQPGVTPRNIYLKPGSVPNNQVRHWPLAR
MPYFRRLMRQPRLLNVPDIARLPSEAAEEKRFLREWRVKSLLVLTPVHFGETQIALGAVNCERAREWSQAFMDELGIAAT
LICAVMELTRIAQALTVSERRYQELFNQLPLACGLVDRRNRVKLLNSIARQNLPVSDGQDLLALVRPEEEAMLQDTLQVV
RDGVLSQAWCEISMKGPLLNQQWIKLSFSTMSDDPGTLLMLAEDVSERHRLADELSFHANYDALTGLPNRSHFEAVLDKL
LQQIPEEPICVAFLDLDQFQVINNVSGHQAGDKLLCQVALRLKQLVRKGDTVARLGGDEFAILMHYCNEDTAKVIAQRIC
TQLFEHEFYWEHRRHNVSVSMGVAPLDAGVNDIYVLMSRADAACRLAKEQGRNGWHIYCATDPKMNRLYSEMTASVDIID
ALSQNQFQLYYQLIEPLLNEQAGIHMEILLRLQRPDGKMLSPGLFLPAAERYNLASRVDRWVIDNLLRWGGNHLALWQEL
DMVSVNLSANSLSDQEFMEWLEIRLMAEPELVSKLCFEITETAAVSQLEQAQALIELLRPLGCKLALDDFGSGFSSFAYL
KLLDVDFVKIDGQFVVNLCDNKSDQAIVNAICQLGRDMDFDVIAEFVESEAVGLRLRELEVDYAQGYAIGKPEPLDNLSS
GKRVPWLSDLTTG

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=445, Percent_Identity=30.7865168539326, Blast_Score=193, Evalue=3e-50,
Organism=Escherichia coli, GI1788849, Length=429, Percent_Identity=29.1375291375291, Blast_Score=177, Evalue=2e-45,
Organism=Escherichia coli, GI1788381, Length=448, Percent_Identity=30.3571428571429, Blast_Score=171, Evalue=2e-43,
Organism=Escherichia coli, GI87081921, Length=437, Percent_Identity=27.2311212814645, Blast_Score=145, Evalue=7e-36,
Organism=Escherichia coli, GI87082096, Length=484, Percent_Identity=26.6528925619835, Blast_Score=139, Evalue=9e-34,
Organism=Escherichia coli, GI226510982, Length=451, Percent_Identity=27.4944567627494, Blast_Score=124, Evalue=3e-29,
Organism=Escherichia coli, GI1790496, Length=234, Percent_Identity=33.3333333333333, Blast_Score=117, Evalue=4e-27,
Organism=Escherichia coli, GI87081980, Length=250, Percent_Identity=32, Blast_Score=105, Evalue=9e-24,
Organism=Escherichia coli, GI87081845, Length=261, Percent_Identity=26.8199233716475, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI1788502, Length=252, Percent_Identity=25.7936507936508, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI87081881, Length=178, Percent_Identity=34.2696629213483, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1787802, Length=234, Percent_Identity=28.2051282051282, Blast_Score=92, Evalue=2e-19,
Organism=Escherichia coli, GI1789650, Length=449, Percent_Identity=24.0534521158129, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=32.7272727272727, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI87081743, Length=239, Percent_Identity=27.1966527196653, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1788085, Length=177, Percent_Identity=30.5084745762712, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1786507, Length=260, Percent_Identity=26.9230769230769, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787055, Length=272, Percent_Identity=29.4117647058824, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI87082007, Length=174, Percent_Identity=36.2068965517241, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI1786584, Length=179, Percent_Identity=29.608938547486, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI87081977, Length=156, Percent_Identity=32.6923076923077, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI145693134, Length=229, Percent_Identity=28.82096069869, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787262, Length=160, Percent_Identity=31.875, Blast_Score=74, Evalue=5e-14,
Organism=Escherichia coli, GI87081974, Length=129, Percent_Identity=35.6589147286822, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI1788956, Length=128, Percent_Identity=32.03125, Blast_Score=70, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 82755; Mature: 82624

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPELNPLHAALAGIFTDVPLVTLEQNVDRALQTMTAKLDCDGVFVLSASTRQPGVTPR
CCCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHEECCCEEEEEEECCCCCCCCCC
NIYLKPGSVPNNQVRHWPLARMPYFRRLMRQPRLLNVPDIARLPSEAAEEKRFLREWRVK
EEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHH
SLLVLTPVHFGETQIALGAVNCERAREWSQAFMDELGIAATLICAVMELTRIAQALTVSE
HEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRYQELFNQLPLACGLVDRRNRVKLLNSIARQNLPVSDGQDLLALVRPEEEAMLQDTLQV
HHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHH
VRDGVLSQAWCEISMKGPLLNQQWIKLSFSTMSDDPGTLLMLAEDVSERHRLADELSFHA
HHHHHHHHHHHEEECCCCCCCCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHCC
NYDALTGLPNRSHFEAVLDKLLQQIPEEPICVAFLDLDQFQVINNVSGHQAGDKLLCQVA
CCHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCHHHHHHHHHH
LRLKQLVRKGDTVARLGGDEFAILMHYCNEDTAKVIAQRICTQLFEHEFYWEHRRHNVSV
HHHHHHHHCCCCEEECCCCCEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
SMGVAPLDAGVNDIYVLMSRADAACRLAKEQGRNGWHIYCATDPKMNRLYSEMTASVDII
EECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHH
DALSQNQFQLYYQLIEPLLNEQAGIHMEILLRLQRPDGKMLSPGLFLPAAERYNLASRVD
HHHCCCHHHHHHHHHHHHHCCCCCCEEEHEEEEECCCCCCCCCCCCCCCHHHCCHHHHHH
RWVIDNLLRWGGNHLALWQELDMVSVNLSANSLSDQEFMEWLEIRLMAEPELVSKLCFEI
HHHHHHHHHHCCCEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
TETAAVSQLEQAQALIELLRPLGCKLALDDFGSGFSSFAYLKLLDVDFVKIDGQFVVNLC
HHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHCCCHHHHHHHHEECCEEEEECCEEEEEEC
DNKSDQAIVNAICQLGRDMDFDVIAEFVESEAVGLRLRELEVDYAQGYAIGKPEPLDNLS
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCEEEHHEEEHHHCCEECCCCCCCCCCC
SGKRVPWLSDLTTG
CCCCCCCHHCCCCC
>Mature Secondary Structure 
SLPELNPLHAALAGIFTDVPLVTLEQNVDRALQTMTAKLDCDGVFVLSASTRQPGVTPR
CCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHEECCCEEEEEEECCCCCCCCCC
NIYLKPGSVPNNQVRHWPLARMPYFRRLMRQPRLLNVPDIARLPSEAAEEKRFLREWRVK
EEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHH
SLLVLTPVHFGETQIALGAVNCERAREWSQAFMDELGIAATLICAVMELTRIAQALTVSE
HEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRYQELFNQLPLACGLVDRRNRVKLLNSIARQNLPVSDGQDLLALVRPEEEAMLQDTLQV
HHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHH
VRDGVLSQAWCEISMKGPLLNQQWIKLSFSTMSDDPGTLLMLAEDVSERHRLADELSFHA
HHHHHHHHHHHEEECCCCCCCCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHCC
NYDALTGLPNRSHFEAVLDKLLQQIPEEPICVAFLDLDQFQVINNVSGHQAGDKLLCQVA
CCHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCHHHHHHHHHH
LRLKQLVRKGDTVARLGGDEFAILMHYCNEDTAKVIAQRICTQLFEHEFYWEHRRHNVSV
HHHHHHHHCCCCEEECCCCCEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
SMGVAPLDAGVNDIYVLMSRADAACRLAKEQGRNGWHIYCATDPKMNRLYSEMTASVDII
EECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHH
DALSQNQFQLYYQLIEPLLNEQAGIHMEILLRLQRPDGKMLSPGLFLPAAERYNLASRVD
HHHCCCHHHHHHHHHHHHHCCCCCCEEEHEEEEECCCCCCCCCCCCCCCHHHCCHHHHHH
RWVIDNLLRWGGNHLALWQELDMVSVNLSANSLSDQEFMEWLEIRLMAEPELVSKLCFEI
HHHHHHHHHHCCCEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
TETAAVSQLEQAQALIELLRPLGCKLALDDFGSGFSSFAYLKLLDVDFVKIDGQFVVNLC
HHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHCCCHHHHHHHHEECCEEEEECCEEEEEEC
DNKSDQAIVNAICQLGRDMDFDVIAEFVESEAVGLRLRELEVDYAQGYAIGKPEPLDNLS
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCEEEHHEEEHHHCCEECCCCCCCCCCC
SGKRVPWLSDLTTG
CCCCCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]