Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776096

Identifier: 119776096

GI number: 119776096

Start: 3527800

End: 3528936

Strand: Reverse

Name: 119776096

Synonym: Sama_2964

Alternate gene names: NA

Gene position: 3528936-3527800 (Counterclockwise)

Preceding gene: 119776097

Following gene: 119776095

Centisome position: 81.95

GC content: 56.55

Gene sequence:

>1137_bases
ATGAATAAGACAAAGCTTTTTGTGTTGGTAAGTTCTCTGTTAAGCGCTGGCGTCTGGGCAAGCCCTCCAGGCGAAAATAC
CCAAGGTAGTACAACGATTTCCGTATCCGACAGTGTGCTTGGGGCAAACACCTGTATCGTTCCGGCATCCGCCATGGCAA
ACGACGCTGACCTCGATATTTCTGCCAGTGCGCTGGCGAGTGCCATGTCGGCCGCCTCATCCTACATCGATATCAGCTAT
TCCGGTGGTGTGAACCTTGACCTGACAAGGCACGGGAAAAACGGCGCCGTGCATCAGGTCGCACTGACTGCGAGTATGGG
CAGTGGTACCCTGTTTGCCCAGACGGCAAGTTCCGGGGCAGAGGGCAGCGTTGGCGCTGCGGCCACCGCCAGTGCCGAAG
CAGAGGCTGCCGCCCAGATGATTGCACAGGCCTATTCAAGTGTGTTTCAAGGTATCGATTTTTCGATTGATCTTGAAGTG
ATTGAAATCAGGGTCAGAGTGGGGACCAATGCGACGGCAGAGGCCGTTGCCGCAGTAGAAGGCGCGACCGAGAGTTCAGC
TGATGCCGAGTCCGGTGCGGGTGCTGACGGTGACAGCAGCGCATCAGCAAGCGCAGCGGGCGGCGGAATCTCCAGCAGTG
GTAGCACCTTCTATGTCCAGGGTGCGAACATAGAGACCTTTACTGCGCAGATGAGTGCCGCAAGTGGCACCGTATTTAAT
GTTCAAACCTCTGCGTTGGCTCAGGTCTATGCCGATGCCATTGCCACCTCACTGGTGTATGCCATGGCAGAAGCCTCTTC
TGAAGCGCAGGCAGCAGGAATGCTGACCTTTGAGTGGGATTTGCCGATTATAGGATCAGGCTCTCTCCCGGTTGTGTCAG
ACTTTGACTCTGCCGCAAACGCGGCGCAGGAGATAGCCAATGCAGGTCAGTCGATTGCTTCCTATGCGCAAGCCGCAGCA
AGCGCGTCAGCCAGCGCAATGGGTGGTTCGTCGGTGAATATGGGCATGATGGTGCACTATGAAAATCTGCCGGGCACTGA
AGATCTGCTGGAAATAGTGGGCAGCGGCAGCCTTGCGCTGGATTGCTCACAGGCCTCGGCCAGTGCCGGTGCATCTGCTG
ATGCTGAGACTGACTAG

Upstream 100 bases:

>100_bases
GCTTTTAAACCGACTTCTATACTGTTTCAGGCAGTAGAAACGCGGCCATGGCTCAGTCGCGAGCCATGGCAGTGACCACG
GTAAACAAGGAAGAACCGCT

Downstream 100 bases:

>100_bases
ACACGCACCGCTGGACGATGGTTGAGGTTCTTTAGCCATGCCCGGTAGGATTCTAAAGGCCTGTTCTTGATGAACAGGCC
TTTTTGTTAGGTCAGTGAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MNKTKLFVLVSSLLSAGVWASPPGENTQGSTTISVSDSVLGANTCIVPASAMANDADLDISASALASAMSAASSYIDISY
SGGVNLDLTRHGKNGAVHQVALTASMGSGTLFAQTASSGAEGSVGAAATASAEAEAAAQMIAQAYSSVFQGIDFSIDLEV
IEIRVRVGTNATAEAVAAVEGATESSADAESGAGADGDSSASASAAGGGISSSGSTFYVQGANIETFTAQMSAASGTVFN
VQTSALAQVYADAIATSLVYAMAEASSEAQAAGMLTFEWDLPIIGSGSLPVVSDFDSAANAAQEIANAGQSIASYAQAAA
SASASAMGGSSVNMGMMVHYENLPGTEDLLEIVGSGSLALDCSQASASAGASADAETD

Sequences:

>Translated_378_residues
MNKTKLFVLVSSLLSAGVWASPPGENTQGSTTISVSDSVLGANTCIVPASAMANDADLDISASALASAMSAASSYIDISY
SGGVNLDLTRHGKNGAVHQVALTASMGSGTLFAQTASSGAEGSVGAAATASAEAEAAAQMIAQAYSSVFQGIDFSIDLEV
IEIRVRVGTNATAEAVAAVEGATESSADAESGAGADGDSSASASAAGGGISSSGSTFYVQGANIETFTAQMSAASGTVFN
VQTSALAQVYADAIATSLVYAMAEASSEAQAAGMLTFEWDLPIIGSGSLPVVSDFDSAANAAQEIANAGQSIASYAQAAA
SASASAMGGSSVNMGMMVHYENLPGTEDLLEIVGSGSLALDCSQASASAGASADAETD
>Mature_378_residues
MNKTKLFVLVSSLLSAGVWASPPGENTQGSTTISVSDSVLGANTCIVPASAMANDADLDISASALASAMSAASSYIDISY
SGGVNLDLTRHGKNGAVHQVALTASMGSGTLFAQTASSGAEGSVGAAATASAEAEAAAQMIAQAYSSVFQGIDFSIDLEV
IEIRVRVGTNATAEAVAAVEGATESSADAESGAGADGDSSASASAAGGGISSSGSTFYVQGANIETFTAQMSAASGTVFN
VQTSALAQVYADAIATSLVYAMAEASSEAQAAGMLTFEWDLPIIGSGSLPVVSDFDSAANAAQEIANAGQSIASYAQAAA
SASASAMGGSSVNMGMMVHYENLPGTEDLLEIVGSGSLALDCSQASASAGASADAETD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36986; Mature: 36986

Theoretical pI: Translated: 3.52; Mature: 3.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTKLFVLVSSLLSAGVWASPPGENTQGSTTISVSDSVLGANTCIVPASAMANDADLDI
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEECCCEEEEECHHCCCCCCCCC
SASALASAMSAASSYIDISYSGGVNLDLTRHGKNGAVHQVALTASMGSGTLFAQTASSGA
CHHHHHHHHHHHHHEEEEEECCCCEEEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCC
EGSVGAAATASAEAEAAAQMIAQAYSSVFQGIDFSIDLEVIEIRVRVGTNATAEAVAAVE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCHHHHHHHHC
GATESSADAESGAGADGDSSASASAAGGGISSSGSTFYVQGANIETFTAQMSAASGTVFN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEHHCCCCEEEE
VQTSALAQVYADAIATSLVYAMAEASSEAQAAGMLTFEWDLPIIGSGSLPVVSDFDSAAN
EHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCEEEEEEECCCEECCCCCCEEECCHHHHH
AAQEIANAGQSIASYAQAAASASASAMGGSSVNMGMMVHYENLPGTEDLLEIVGSGSLAL
HHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCEEE
DCSQASASAGASADAETD
EECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNKTKLFVLVSSLLSAGVWASPPGENTQGSTTISVSDSVLGANTCIVPASAMANDADLDI
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEECCCEEEEECHHCCCCCCCCC
SASALASAMSAASSYIDISYSGGVNLDLTRHGKNGAVHQVALTASMGSGTLFAQTASSGA
CHHHHHHHHHHHHHEEEEEECCCCEEEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCC
EGSVGAAATASAEAEAAAQMIAQAYSSVFQGIDFSIDLEVIEIRVRVGTNATAEAVAAVE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCHHHHHHHHC
GATESSADAESGAGADGDSSASASAAGGGISSSGSTFYVQGANIETFTAQMSAASGTVFN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEHHCCCCEEEE
VQTSALAQVYADAIATSLVYAMAEASSEAQAAGMLTFEWDLPIIGSGSLPVVSDFDSAAN
EHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCEEEEEEECCCEECCCCCCEEECCHHHHH
AAQEIANAGQSIASYAQAAASASASAMGGSSVNMGMMVHYENLPGTEDLLEIVGSGSLAL
HHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCEEE
DCSQASASAGASADAETD
EECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA