| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is ordL [H]
Identifier: 119776042
GI number: 119776042
Start: 3459837
End: 3461318
Strand: Reverse
Name: ordL [H]
Synonym: Sama_2910
Alternate gene names: 119776042
Gene position: 3461318-3459837 (Counterclockwise)
Preceding gene: 119776043
Following gene: 119776040
Centisome position: 80.38
GC content: 61.67
Gene sequence:
>1482_bases GTGATTTCTTCTGTGGGTGGGCTCGATGAGAGCCTGTGGTATCTGACCCTTGGGGAACCCATGCTGCCCCGCGCTTCGCT GGAAAATGATATCGAGGCGGATGTTTGCATTCTGGGCGCCGGGTACTCAGGCCTGTGGACGGCCCTGTTTCTCAAACAGA AACAGCCTTCGCTGAAGGTGGTTGTGCTTGAAGCTGCCATGGCTGGAGAGGGGGCGTCCGGGCGCAACGGCGGTTGGCTG ATGGGCAGCTTTGGCGGCGATTTGGGTTATCTGGCACAGCTGGATGGCGAGGCCCGGCGCCGGGCAAAAGCGCGCATTAC CGGCACGGTTGCCCGGGCGGCCAATACCTTCAGCGAGCTGGGTATCCAATGCGACTTCCATCATGGCGGTAACCTGTATC AGGCGGCGCGCTACCCCCAGCAGCTTAAGCGATTGCAAGCCGAGCTGGCGCATTTTCGTGAAGCCGGTTTTGACGAAGAA GACTATCGCCTGCTGTCGGCCGCAGACGCCAGCCACGCCCTTAATCTGCCGGGGACACAAGCGGCGCTCTACACCCCTCA CTGTGCCCGGGTGCATCCGCTGAAGCTGGCCCGGGGCCTTGCCCGGGCCGCCGAACGTGCCGGCGTGGTTATCTATGAGC ACAGCCCTGTGCAGCTGGCTGAAAAAAGCAGGTTCACCCCCTCTGAAAGCGGCCTGAAAACCCAGAAAAACACCGTCTTT ACCCCAAAGGGCTCGGTCAGGGCCGCTGTGGTGGTGGCCGCGCTCGAAGGCTACCAGCGGCTCCTGGGGCTTGATAACAG AACCAGCCTGCCGGTGTTCAGTGTGCTCTGCGCCACCGAACCCCTGAGCGAACAGCAATGGGCCACTATCGGTCTTGAAA ACCGCGAAACCTTTGCCGATGCCTCACGGCTTATCACCTACGGCCAGCGCAGCGCAGACAATCGCTTGGTATTTGGTGCA CGCGGTGGCTATGGCTTTGGCGGCGCAGTGAAAACCCAATTTGGCTTTACGCCCCGCACGTTGGGTGAATCGCCAAGAGG CGATATCTTTGACCTGAGAAGTCAGCTGTTGCAGGCGTTTTTCCCCGCCCTTGAGGGCACGCAAATCACCCATGGCTGGG GCGGCTGTTTGTCGCTCTCGCGGGCGTTTAGGCCCCATGCACTCTTCGATGAAGCTGCGGGGCTTGCTTTTGTGGGCGGC TATGGCGGCGAAGGCGTGGGCGCCAGCATGCTCTTTGGCGAAACCCTGGCCGAGCTGATTGCCCGGCCAGAGGGTGAGCT CGCTGGTATGCCATGGGCGTACCGGGGCGCCGTGAGTGAGCATCTGCGCCGCTGGGAGTCGGAGCCACTTCCCTGGCTGG GTTACAGCGCAAGCGGGCTGCTTTACCGGTTTGAAGAGCGCCTGCTCTGCCGCAAGCCTCAGCCAGGGTATACGCCTGTG GTCAGTCGGCTTGCCGATGCCCTGGAAATCCTGATGAGTTAG
Upstream 100 bases:
>100_bases GACCCATCAGCAGCGCCTGGATGGACACCCATGTGGACGAGGTCAAGAGCCTGCTGGGCGTAGACGATGCCGACGGGCAG GCCACGGCCGGGAATGGGGC
Downstream 100 bases:
>100_bases TCAATCATTGAGCCTCGGTGGGGACTGGGCTGACCACACCCAACTGGCTCAGCTGCAGCGCCGCCATGGTGGCTTCTATT GCAGCCCTGTGCCTGGTCTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 493; Mature: 493
Protein sequence:
>493_residues MISSVGGLDESLWYLTLGEPMLPRASLENDIEADVCILGAGYSGLWTALFLKQKQPSLKVVVLEAAMAGEGASGRNGGWL MGSFGGDLGYLAQLDGEARRRAKARITGTVARAANTFSELGIQCDFHHGGNLYQAARYPQQLKRLQAELAHFREAGFDEE DYRLLSAADASHALNLPGTQAALYTPHCARVHPLKLARGLARAAERAGVVIYEHSPVQLAEKSRFTPSESGLKTQKNTVF TPKGSVRAAVVVAALEGYQRLLGLDNRTSLPVFSVLCATEPLSEQQWATIGLENRETFADASRLITYGQRSADNRLVFGA RGGYGFGGAVKTQFGFTPRTLGESPRGDIFDLRSQLLQAFFPALEGTQITHGWGGCLSLSRAFRPHALFDEAAGLAFVGG YGGEGVGASMLFGETLAELIARPEGELAGMPWAYRGAVSEHLRRWESEPLPWLGYSASGLLYRFEERLLCRKPQPGYTPV VSRLADALEILMS
Sequences:
>Translated_493_residues MISSVGGLDESLWYLTLGEPMLPRASLENDIEADVCILGAGYSGLWTALFLKQKQPSLKVVVLEAAMAGEGASGRNGGWL MGSFGGDLGYLAQLDGEARRRAKARITGTVARAANTFSELGIQCDFHHGGNLYQAARYPQQLKRLQAELAHFREAGFDEE DYRLLSAADASHALNLPGTQAALYTPHCARVHPLKLARGLARAAERAGVVIYEHSPVQLAEKSRFTPSESGLKTQKNTVF TPKGSVRAAVVVAALEGYQRLLGLDNRTSLPVFSVLCATEPLSEQQWATIGLENRETFADASRLITYGQRSADNRLVFGA RGGYGFGGAVKTQFGFTPRTLGESPRGDIFDLRSQLLQAFFPALEGTQITHGWGGCLSLSRAFRPHALFDEAAGLAFVGG YGGEGVGASMLFGETLAELIARPEGELAGMPWAYRGAVSEHLRRWESEPLPWLGYSASGLLYRFEERLLCRKPQPGYTPV VSRLADALEILMS >Mature_493_residues MISSVGGLDESLWYLTLGEPMLPRASLENDIEADVCILGAGYSGLWTALFLKQKQPSLKVVVLEAAMAGEGASGRNGGWL MGSFGGDLGYLAQLDGEARRRAKARITGTVARAANTFSELGIQCDFHHGGNLYQAARYPQQLKRLQAELAHFREAGFDEE DYRLLSAADASHALNLPGTQAALYTPHCARVHPLKLARGLARAAERAGVVIYEHSPVQLAEKSRFTPSESGLKTQKNTVF TPKGSVRAAVVVAALEGYQRLLGLDNRTSLPVFSVLCATEPLSEQQWATIGLENRETFADASRLITYGQRSADNRLVFGA RGGYGFGGAVKTQFGFTPRTLGESPRGDIFDLRSQLLQAFFPALEGTQITHGWGGCLSLSRAFRPHALFDEAAGLAFVGG YGGEGVGASMLFGETLAELIARPEGELAGMPWAYRGAVSEHLRRWESEPLPWLGYSASGLLYRFEERLLCRKPQPGYTPV VSRLADALEILMS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787559, Length=416, Percent_Identity=29.0865384615385, Blast_Score=118, Evalue=9e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006076 [H]
Pfam domain/function: PF01266 DAO [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 53374; Mature: 53374
Theoretical pI: Translated: 7.05; Mature: 7.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISSVGGLDESLWYLTLGEPMLPRASLENDIEADVCILGAGYSGLWTALFLKQKQPSLKV CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCEEE VVLEAAMAGEGASGRNGGWLMGSFGGDLGYLAQLDGEARRRAKARITGTVARAANTFSEL EEEEEECCCCCCCCCCCCEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC GIQCDFHHGGNLYQAARYPQQLKRLQAELAHFREAGFDEEDYRLLSAADASHALNLPGTQ CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCC AALYTPHCARVHPLKLARGLARAAERAGVVIYEHSPVQLAEKSRFTPSESGLKTQKNTVF EEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCCCCCCCCCCCCCCEEE TPKGSVRAAVVVAALEGYQRLLGLDNRTSLPVFSVLCATEPLSEQQWATIGLENRETFAD CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCHHHHH ASRLITYGQRSADNRLVFGARGGYGFGGAVKTQFGFTPRTLGESPRGDIFDLRSQLLQAF HHHHHHHCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHHCCCCCCCCHHHHHHHHHHHH FPALEGTQITHGWGGCLSLSRAFRPHALFDEAAGLAFVGGYGGEGVGASMLFGETLAELI HHHCCCCEEECCCHHHHHHHHHCCCCHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHH ARPEGELAGMPWAYRGAVSEHLRRWESEPLPWLGYSASGLLYRFEERLLCRKPQPGYTPV CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHCCCCCCCHHH VSRLADALEILMS HHHHHHHHHHHCC >Mature Secondary Structure MISSVGGLDESLWYLTLGEPMLPRASLENDIEADVCILGAGYSGLWTALFLKQKQPSLKV CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCEEE VVLEAAMAGEGASGRNGGWLMGSFGGDLGYLAQLDGEARRRAKARITGTVARAANTFSEL EEEEEECCCCCCCCCCCCEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC GIQCDFHHGGNLYQAARYPQQLKRLQAELAHFREAGFDEEDYRLLSAADASHALNLPGTQ CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCC AALYTPHCARVHPLKLARGLARAAERAGVVIYEHSPVQLAEKSRFTPSESGLKTQKNTVF EEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCCCCCCCCCCCCCCEEE TPKGSVRAAVVVAALEGYQRLLGLDNRTSLPVFSVLCATEPLSEQQWATIGLENRETFAD CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCHHHHH ASRLITYGQRSADNRLVFGARGGYGFGGAVKTQFGFTPRTLGESPRGDIFDLRSQLLQAF HHHHHHHCCCCCCCEEEEECCCCCCCCCCEEEECCCCHHHCCCCCCCCHHHHHHHHHHHH FPALEGTQITHGWGGCLSLSRAFRPHALFDEAAGLAFVGGYGGEGVGASMLFGETLAELI HHHCCCCEEECCCHHHHHHHHHCCCCHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHH ARPEGELAGMPWAYRGAVSEHLRRWESEPLPWLGYSASGLLYRFEERLLCRKPQPGYTPV CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHCCCCCCCHHH VSRLADALEILMS HHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]