| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776037
Identifier: 119776037
GI number: 119776037
Start: 3453033
End: 3454031
Strand: Reverse
Name: 119776037
Synonym: Sama_2905
Alternate gene names: NA
Gene position: 3454031-3453033 (Counterclockwise)
Preceding gene: 119776038
Following gene: 119776032
Centisome position: 80.21
GC content: 36.04
Gene sequence:
>999_bases TTGGCATGGCCGAAAGGCCCCATTTTGCCTCAAATGGATCTCTTGAAGCTTACCAACAAACACTGTACATACCCGTCATC GCGCCAGAGAGCAGGCTCGACAGGGTATTGGCATTTTGTTTGTCTCAAAAAGTGTTTAGGATGTCCTGTTATTTGGTTAT TTGATATGAAGATGCAAGACAGGGATTATGATATGAGAATAGTTTTGGCTTTTATGCTAATCAGCTTGATTATTGTACGG TTAGCTCATGCGGATGAACTCCAGGTAAATGAAATGGATAATCACAAACTGCTTGATTTGGTTACTGCTACAATTCAAAA TAATGATGTTGATGAAAAAGAAAAAAATTTTGTATACAAAAGCTTGAATGCTATTGCCAAGCAATATCCAGCGGAGGTTA ACTATTTGCTGGGACAAATTTTTTATTTTGGAATATTTGAGAATAGAAATCTTGAAAAAGCTATAAATTATCTAACTATT TCCTCTGAGTTGAATGATACTAGAGCTCAATATTTGTTAGGGACAATCCTTGCAATGGAGCAGGGATATGTCCATTATGA ACAAGCTATACCACTATTGGAAAAAGCAGCAGCAGATGGTATTCCTGATGCAATGCATAATTTATACATCCTATATCGGA AAGAGAAATACCCAAAAGATCTAGCCATAGAGTGGCTAAAAAAAGCTGCGAATATAAAATTTGAACCGGCAATGTTTTTT TTGAAGCGAGAAGAATATTTGGCCGCACTGGAATCAAATGATAAGGAGAAATTGGAAGAGATAGCAAAGTATCTAATTTC TGAGAGATTTGAAAGCCTTTCTGGAGAAAGATACTTCTTGTTGGCAAAAATATATAATAGTTCATCACCATTAAGTGATG ATGATTTAAGACTCAAGTATCTGCAATTGTCGGCTGATGAAGGATTCGACTTGGCTATAAACATCTTAAGTAATTATAAT AGACTTGTGGAGCAACAAGTCAAAGAGGGTGGGAATTAG
Upstream 100 bases:
>100_bases GCGGCAAATGGTGTAGAGGAAAGCAGCAAAGCGCGTCGATACATCCAGACTAATCAAGCCTGGTATATTCCACGTTTCCC CTGCTGGCTCGAACCAGAAT
Downstream 100 bases:
>100_bases TGAATGAATCAACGCTAACTTTCAAAAATGTATTGGTCGAGACTTGATCTGAAACCTCATTTTTAAAAGGTGAGAGTTAC CCGTTTTGATAAGGGTGTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 332; Mature: 331
Protein sequence:
>332_residues MAWPKGPILPQMDLLKLTNKHCTYPSSRQRAGSTGYWHFVCLKKCLGCPVIWLFDMKMQDRDYDMRIVLAFMLISLIIVR LAHADELQVNEMDNHKLLDLVTATIQNNDVDEKEKNFVYKSLNAIAKQYPAEVNYLLGQIFYFGIFENRNLEKAINYLTI SSELNDTRAQYLLGTILAMEQGYVHYEQAIPLLEKAAADGIPDAMHNLYILYRKEKYPKDLAIEWLKKAANIKFEPAMFF LKREEYLAALESNDKEKLEEIAKYLISERFESLSGERYFLLAKIYNSSSPLSDDDLRLKYLQLSADEGFDLAINILSNYN RLVEQQVKEGGN
Sequences:
>Translated_332_residues MAWPKGPILPQMDLLKLTNKHCTYPSSRQRAGSTGYWHFVCLKKCLGCPVIWLFDMKMQDRDYDMRIVLAFMLISLIIVR LAHADELQVNEMDNHKLLDLVTATIQNNDVDEKEKNFVYKSLNAIAKQYPAEVNYLLGQIFYFGIFENRNLEKAINYLTI SSELNDTRAQYLLGTILAMEQGYVHYEQAIPLLEKAAADGIPDAMHNLYILYRKEKYPKDLAIEWLKKAANIKFEPAMFF LKREEYLAALESNDKEKLEEIAKYLISERFESLSGERYFLLAKIYNSSSPLSDDDLRLKYLQLSADEGFDLAINILSNYN RLVEQQVKEGGN >Mature_331_residues AWPKGPILPQMDLLKLTNKHCTYPSSRQRAGSTGYWHFVCLKKCLGCPVIWLFDMKMQDRDYDMRIVLAFMLISLIIVRL AHADELQVNEMDNHKLLDLVTATIQNNDVDEKEKNFVYKSLNAIAKQYPAEVNYLLGQIFYFGIFENRNLEKAINYLTIS SELNDTRAQYLLGTILAMEQGYVHYEQAIPLLEKAAADGIPDAMHNLYILYRKEKYPKDLAIEWLKKAANIKFEPAMFFL KREEYLAALESNDKEKLEEIAKYLISERFESLSGERYFLLAKIYNSSSPLSDDDLRLKYLQLSADEGFDLAINILSNYNR LVEQQVKEGGN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38473; Mature: 38342
Theoretical pI: Translated: 5.49; Mature: 5.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAWPKGPILPQMDLLKLTNKHCTYPSSRQRAGSTGYWHFVCLKKCLGCPVIWLFDMKMQD CCCCCCCCCCCHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCEEEEEECEECC RDYDMRIVLAFMLISLIIVRLAHADELQVNEMDNHKLLDLVTATIQNNDVDEKEKNFVYK CCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH SLNAIAKQYPAEVNYLLGQIFYFGIFENRNLEKAINYLTISSELNDTRAQYLLGTILAME HHHHHHHHCCHHHHHHHHHHHHHHEECCCCHHHHHHEEEEECCCCHHHHHHHHHHHHHHH QGYVHYEQAIPLLEKAAADGIPDAMHNLYILYRKEKYPKDLAIEWLKKAANIKFEPAMFF CCCEEHHHHHHHHHHHHCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHH LKREEYLAALESNDKEKLEEIAKYLISERFESLSGERYFLLAKIYNSSSPLSDDDLRLKY HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEE LQLSADEGFDLAINILSNYNRLVEQQVKEGGN EEEECCCCCHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure AWPKGPILPQMDLLKLTNKHCTYPSSRQRAGSTGYWHFVCLKKCLGCPVIWLFDMKMQD CCCCCCCCCCHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCEEEEEECEECC RDYDMRIVLAFMLISLIIVRLAHADELQVNEMDNHKLLDLVTATIQNNDVDEKEKNFVYK CCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH SLNAIAKQYPAEVNYLLGQIFYFGIFENRNLEKAINYLTISSELNDTRAQYLLGTILAME HHHHHHHHCCHHHHHHHHHHHHHHEECCCCHHHHHHEEEEECCCCHHHHHHHHHHHHHHH QGYVHYEQAIPLLEKAAADGIPDAMHNLYILYRKEKYPKDLAIEWLKKAANIKFEPAMFF CCCEEHHHHHHHHHHHHCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHH LKREEYLAALESNDKEKLEEIAKYLISERFESLSGERYFLLAKIYNSSSPLSDDDLRLKY HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEE LQLSADEGFDLAINILSNYNRLVEQQVKEGGN EEEECCCCCHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA