Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776027

Identifier: 119776027

GI number: 119776027

Start: 3438459

End: 3440168

Strand: Reverse

Name: 119776027

Synonym: Sama_2895

Alternate gene names: NA

Gene position: 3440168-3438459 (Counterclockwise)

Preceding gene: 119776028

Following gene: 119776024

Centisome position: 79.89

GC content: 56.37

Gene sequence:

>1710_bases
ATGAAAAAACTTGCGCTAGCCGTGGCCATAATCGCCGCCGGAGCGGGAGCCTATTGGTACAGCCAGCAGCAAGGCCAGGG
CGCCTTGACCAATCCAGCACTCGATTACATTCCCGCTGACACCCCCATTTTTTCGGGCCAGCTGAAGCCATTTCCTATCA
AGGATTATCTGATCGCTACCGCAGGCAACTCGGCCCATTTGGCACAAAGCCCGCTGTTGCAAGAAGAGATGGATGAGATT
ACCGAGCCCAGCGTTCACTTCGGCATGTACCTGTATAAGGCCTATGTGGAAGGGCTGAAGGATCCCGCCGCGATGCTCAA
GCGCTTCGGCCTTGGCGACCAAAGCCGTGGCTTCTTCTATACCCTGGGCGCCTTGCCCGTTGCCCGCATGGAAGTGGCCG
ATACTACCGCCTTCTGGAAGCTAATGGATGAGGCCGAGCAGGCCAGCGGTTGGCAGCATACCCAGGGGACCATTGCCGGG
CAGAGTTACCGCAGTTATCTGCTGTCCGATGCCAACGACGAAGAAAAAGTGGAACTGGTGATTGCCGATCGTGAGGGCAT
GGTGAGTGTGACCCTCAATACCAGTTTCCAGGATCCCACGCTGCTGGAGCATGCACTGGGCGTGACCAAGGTCACCAACC
CTCTGTCAGGCACCAAGTTGCTGGCCGATATCATTAAAACCCACGGTTTTATGGATGACAGTGTCAGCTACATCAACCAT
CAGGAGTTGGTGCGTGCGGTCGTATCCGGTGATAACCAGCTGGGCAAACAGCTGATGAACCTCTTTGCCAAGACAGGTGA
AGATCCCTTCCTGGAACTGCGCACGCCCGAGTGCCAGACCGAGCTCAACGCCATCGCGGCCAACTGGCCCCGTACCGTCG
CCGGGCTGACCACAATGAAAGTGGACAGCAAGCAAGCCAGCATGGACATGAAGATGGTGCTGGAAACCCGCAATGAAGTC
GTTATCAAGGCGCTGGACAAGATGCGCGGCTACATAGCCGGTTACGTGCAAAAGCCCGGTGACAGTGTAATGGCCATGGG
GCTGGGGCTGGACGTGGGTCAGCTGGCGCCTTCACTGAACAAGGTTTGGAACGACTTTATGTCGCCCCGTTTGCAGTGTC
AGCCACTGGCCGAATTGCAATCCGAAATGGAAGCCGCCAACCCGGCCATGCTGGGCATGGCAACCGCCATGGCAGATGGC
GTCAAGGGCATAGGCGCAGCCGTGCTGGACTATGATCTGCAGATAGTGAACGACGAGCCAAGTCTGAAAAAGCTGGATGC
CCTGGTCAGTCTTTCTGCCGAAGACCCGGCCTTCCTGTTTGATATGGTAAAACCCTTTGCGCCTATGCTGGGGCAAATCA
ATCTCAAGTCTGGTGATGATGTCGACCTGTCTGATTATATCCCCGCTGAGTTTGGTGTTACCGCCAAGCTGGGGCTGCGT
GGTCAGCATCTGGTAGTTTACAGCGGTGAAGGCGGAAAACGCATGGCAGACAGCCTCAAGGGGGAGACCCTGGCCGCCAA
TGGCCTCTTTGGTATGTCGGCCGATTATGGTCGTCTGCTGTCGCCTCTGATGACCCTGATGGAAGCCTCGGGTGAGGAAA
TCCCTGAAGAGCTCGAAGCCCTCAAGGACTACAAGATGCAGGTGCAAATGGGGATGGATATCAACGAGCAGGGTCCGGTA
TTTAACACTGGCTTTGTGACCAAGCCCTGA

Upstream 100 bases:

>100_bases
CCTTATTCATTAAACCTTTATCTGACTAAGGGATGCCGGACTTGAGGAATTGAGTCCGGGTTTGCCTGCATTTATATATT
CGAACAGAACGGAGTCTTCC

Downstream 100 bases:

>100_bases
CAGGAGTGCGCTCCTTTGCTCCATTAAAAACGCCGCGAAAGCGGCGTTTTTTTATGGCCGGAAAATGGCTTGGCCTGCTT
TGCTGTCACTTTTCATCATT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 569; Mature: 569

Protein sequence:

>569_residues
MKKLALAVAIIAAGAGAYWYSQQQGQGALTNPALDYIPADTPIFSGQLKPFPIKDYLIATAGNSAHLAQSPLLQEEMDEI
TEPSVHFGMYLYKAYVEGLKDPAAMLKRFGLGDQSRGFFYTLGALPVARMEVADTTAFWKLMDEAEQASGWQHTQGTIAG
QSYRSYLLSDANDEEKVELVIADREGMVSVTLNTSFQDPTLLEHALGVTKVTNPLSGTKLLADIIKTHGFMDDSVSYINH
QELVRAVVSGDNQLGKQLMNLFAKTGEDPFLELRTPECQTELNAIAANWPRTVAGLTTMKVDSKQASMDMKMVLETRNEV
VIKALDKMRGYIAGYVQKPGDSVMAMGLGLDVGQLAPSLNKVWNDFMSPRLQCQPLAELQSEMEAANPAMLGMATAMADG
VKGIGAAVLDYDLQIVNDEPSLKKLDALVSLSAEDPAFLFDMVKPFAPMLGQINLKSGDDVDLSDYIPAEFGVTAKLGLR
GQHLVVYSGEGGKRMADSLKGETLAANGLFGMSADYGRLLSPLMTLMEASGEEIPEELEALKDYKMQVQMGMDINEQGPV
FNTGFVTKP

Sequences:

>Translated_569_residues
MKKLALAVAIIAAGAGAYWYSQQQGQGALTNPALDYIPADTPIFSGQLKPFPIKDYLIATAGNSAHLAQSPLLQEEMDEI
TEPSVHFGMYLYKAYVEGLKDPAAMLKRFGLGDQSRGFFYTLGALPVARMEVADTTAFWKLMDEAEQASGWQHTQGTIAG
QSYRSYLLSDANDEEKVELVIADREGMVSVTLNTSFQDPTLLEHALGVTKVTNPLSGTKLLADIIKTHGFMDDSVSYINH
QELVRAVVSGDNQLGKQLMNLFAKTGEDPFLELRTPECQTELNAIAANWPRTVAGLTTMKVDSKQASMDMKMVLETRNEV
VIKALDKMRGYIAGYVQKPGDSVMAMGLGLDVGQLAPSLNKVWNDFMSPRLQCQPLAELQSEMEAANPAMLGMATAMADG
VKGIGAAVLDYDLQIVNDEPSLKKLDALVSLSAEDPAFLFDMVKPFAPMLGQINLKSGDDVDLSDYIPAEFGVTAKLGLR
GQHLVVYSGEGGKRMADSLKGETLAANGLFGMSADYGRLLSPLMTLMEASGEEIPEELEALKDYKMQVQMGMDINEQGPV
FNTGFVTKP
>Mature_569_residues
MKKLALAVAIIAAGAGAYWYSQQQGQGALTNPALDYIPADTPIFSGQLKPFPIKDYLIATAGNSAHLAQSPLLQEEMDEI
TEPSVHFGMYLYKAYVEGLKDPAAMLKRFGLGDQSRGFFYTLGALPVARMEVADTTAFWKLMDEAEQASGWQHTQGTIAG
QSYRSYLLSDANDEEKVELVIADREGMVSVTLNTSFQDPTLLEHALGVTKVTNPLSGTKLLADIIKTHGFMDDSVSYINH
QELVRAVVSGDNQLGKQLMNLFAKTGEDPFLELRTPECQTELNAIAANWPRTVAGLTTMKVDSKQASMDMKMVLETRNEV
VIKALDKMRGYIAGYVQKPGDSVMAMGLGLDVGQLAPSLNKVWNDFMSPRLQCQPLAELQSEMEAANPAMLGMATAMADG
VKGIGAAVLDYDLQIVNDEPSLKKLDALVSLSAEDPAFLFDMVKPFAPMLGQINLKSGDDVDLSDYIPAEFGVTAKLGLR
GQHLVVYSGEGGKRMADSLKGETLAANGLFGMSADYGRLLSPLMTLMEASGEEIPEELEALKDYKMQVQMGMDINEQGPV
FNTGFVTKP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 61762; Mature: 61762

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLALAVAIIAAGAGAYWYSQQQGQGALTNPALDYIPADTPIFSGQLKPFPIKDYLIAT
CCHHHHHHHHHHHCCCHHEECCCCCCCCCCCCCHHCCCCCCCEECCCCCCCCCCCEEEEE
AGNSAHLAQSPLLQEEMDEITEPSVHFGMYLYKAYVEGLKDPAAMLKRFGLGDQSRGFFY
CCCCCHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCEEE
TLGALPVARMEVADTTAFWKLMDEAEQASGWQHTQGTIAGQSYRSYLLSDANDEEKVELV
EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEE
IADREGMVSVTLNTSFQDPTLLEHALGVTKVTNPLSGTKLLADIIKTHGFMDDSVSYINH
EECCCCEEEEEEECCCCCCHHHHHHHCHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHCH
QELVRAVVSGDNQLGKQLMNLFAKTGEDPFLELRTPECQTELNAIAANWPRTVAGLTTMK
HHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCHHHHCCEEEE
VDSKQASMDMKMVLETRNEVVIKALDKMRGYIAGYVQKPGDSVMAMGLGLDVGQLAPSLN
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHCHHHH
KVWNDFMSPRLQCQPLAELQSEMEAANPAMLGMATAMADGVKGIGAAVLDYDLQIVNDEP
HHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCHHHCCHHEEEEEEEEECCCC
SLKKLDALVSLSAEDPAFLFDMVKPFAPMLGQINLKSGDDVDLSDYIPAEFGVTAKLGLR
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCEEECCCCCCCCHHHCCCCCCCCEEEECCC
GQHLVVYSGEGGKRMADSLKGETLAANGLFGMSADYGRLLSPLMTLMEASGEEIPEELEA
CCEEEEEECCCCHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
LKDYKMQVQMGMDINEQGPVFNTGFVTKP
HHHHHEEEEECCCCCCCCCEEECCCCCCC
>Mature Secondary Structure
MKKLALAVAIIAAGAGAYWYSQQQGQGALTNPALDYIPADTPIFSGQLKPFPIKDYLIAT
CCHHHHHHHHHHHCCCHHEECCCCCCCCCCCCCHHCCCCCCCEECCCCCCCCCCCEEEEE
AGNSAHLAQSPLLQEEMDEITEPSVHFGMYLYKAYVEGLKDPAAMLKRFGLGDQSRGFFY
CCCCCHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCEEE
TLGALPVARMEVADTTAFWKLMDEAEQASGWQHTQGTIAGQSYRSYLLSDANDEEKVELV
EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEE
IADREGMVSVTLNTSFQDPTLLEHALGVTKVTNPLSGTKLLADIIKTHGFMDDSVSYINH
EECCCCEEEEEEECCCCCCHHHHHHHCHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHCH
QELVRAVVSGDNQLGKQLMNLFAKTGEDPFLELRTPECQTELNAIAANWPRTVAGLTTMK
HHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCHHHHCCEEEE
VDSKQASMDMKMVLETRNEVVIKALDKMRGYIAGYVQKPGDSVMAMGLGLDVGQLAPSLN
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHCHHHH
KVWNDFMSPRLQCQPLAELQSEMEAANPAMLGMATAMADGVKGIGAAVLDYDLQIVNDEP
HHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCHHHCCHHEEEEEEEEECCCC
SLKKLDALVSLSAEDPAFLFDMVKPFAPMLGQINLKSGDDVDLSDYIPAEFGVTAKLGLR
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCEEECCCCCCCCHHHCCCCCCCCEEEECCC
GQHLVVYSGEGGKRMADSLKGETLAANGLFGMSADYGRLLSPLMTLMEASGEEIPEELEA
CCEEEEEECCCCHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
LKDYKMQVQMGMDINEQGPVFNTGFVTKP
HHHHHEEEEECCCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA