Click here to switch to the map view.

The map label for this gene is yqjV [H]

Identifier: 119775979

GI number: 119775979

Start: 3386120

End: 3387403

Strand: Reverse

Name: yqjV [H]

Synonym: Sama_2847

Alternate gene names: 119775979

Gene position: 3387403-3386120 (Counterclockwise)

Preceding gene: 119775980

Following gene: 119775971

Centisome position: 78.66

GC content: 55.22

Gene sequence:

>1284_bases
ATGCAAAGCGATATTTCCCTTGCCAGAGTGAAACAGTTTCCCCGCCTGATGTGGATTTTACTGTTTGGGTCCTTTATTAC
CCGGGGCAGCTACTACATGGTGTGGCCCTTTCTGGCGGTGATCCTCTATGAACGCTTTGGTTTGTCGGCCACCAACGTTG
GCCTGATTTTATCCTCTGCTGCCCTGCTCTCAGTGCTGGTCAGTTTTATCGGCAGTGCCCTGTCCGACAGGATTGGCAGA
CAAAAGATGATGTATGGCGCAGGCGTGCTCTATATTATTTCGTTTTCGCTGCTGGCCGAGGCCGATTCGGTAGCCGGATT
TGCGCTGGTCATCACCCTCTGCTCCATCGCCACCTCACTGTGGCGGCCGCTGGTATCGGCTCTGATTGGTGACATCATCC
ACGAGTCCCAAACCCGCGAGCTTGCGATGCAGAGTCTGTATTTTATTGTGAATGTGGGCTGCGCCGTGGGACCCATTGCC
GGTGTCTGGCTGGGGTTAACCGGCGAGCAGTCGAGTTTTTACATCACCACAGTGGCTTTTGCTATTTTGCTGTTGCTGCT
TTGGTGGGGCTTTGTCAACCACGAGTTTACCCAGGCGACTCATCCTGGGCAGTTCGGCGAGGAAGGGAATACGGCCAACT
CTGGCAGCGATGACCAGGCAGCATCCGGGATGCGCCATACCCTGCGGGTGCTGGCGAGTGACAGGCTGCTGCAAAGCCTT
ATTCTGGCCAATGTTATCTGCATGTTTATCTTCGGCCAGATGGATGGCTCTCTGGTGCAGTACCTAAGCCGTGCCGGAGT
GCCCAATGTGCTTGAGCTTATCTCCTCGATGATCTTCGCCAATGCCATGATCATCATCACCTGCCAGTTTTTGCTGCTTA
AACTGATGGCCCACTGGTCTTTGGTGAAGCGTATTCAGGTGGCGCTGGTGCTGCTAATCGCATCGCAGCTGTGGATGGGG
TTAAACCCGGTTGACTTATTCTGGGGCTGGATTGGCGCCGTGATTGTGATGAGTCTGGCGGAGGCGGTGCTGTTCCCCAC
CATGAACGTACATATCGACCGCATTGCCCCGCGCCATCTGCGCGGTGCCTATTTTGGCGCATCGTCTTTCTATGAATTTG
GCTTTGCTTTGGCGCCTCTGGGCGGCGGCATAGTGCTGGATCTGCTAAACGGTTCTTGGCTGTTCCTCGGCTGCGCCGCC
CTCACCCTGCTGGTGATGTATTTGTACAGCAAGCTGGAAAACCTGTCCCGCCCCGACTTTGCGACGGAGCGGGTAGAGCA
TTAA

Upstream 100 bases:

>100_bases
GTTAGGCGGCCTGACTTAACTGCGTTAATTCAGACCGCTTAACTTAAATGGTCAAGTTATTCAGCACTCCCGCCTTAATG
ACCCAGCCCAGAGAGGCACG

Downstream 100 bases:

>100_bases
CGCCCGCCTAAAAGGCGTAAAATGCTTGGCTATAATTAGCGCGACGAAGGAGCGTAAGCCAAGCTTTTTACGTCCTTTGT
TGAGGCGCTTGTTAGGCCTT

Product: putative MFS transporter family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MQSDISLARVKQFPRLMWILLFGSFITRGSYYMVWPFLAVILYERFGLSATNVGLILSSAALLSVLVSFIGSALSDRIGR
QKMMYGAGVLYIISFSLLAEADSVAGFALVITLCSIATSLWRPLVSALIGDIIHESQTRELAMQSLYFIVNVGCAVGPIA
GVWLGLTGEQSSFYITTVAFAILLLLLWWGFVNHEFTQATHPGQFGEEGNTANSGSDDQAASGMRHTLRVLASDRLLQSL
ILANVICMFIFGQMDGSLVQYLSRAGVPNVLELISSMIFANAMIIITCQFLLLKLMAHWSLVKRIQVALVLLIASQLWMG
LNPVDLFWGWIGAVIVMSLAEAVLFPTMNVHIDRIAPRHLRGAYFGASSFYEFGFALAPLGGGIVLDLLNGSWLFLGCAA
LTLLVMYLYSKLENLSRPDFATERVEH

Sequences:

>Translated_427_residues
MQSDISLARVKQFPRLMWILLFGSFITRGSYYMVWPFLAVILYERFGLSATNVGLILSSAALLSVLVSFIGSALSDRIGR
QKMMYGAGVLYIISFSLLAEADSVAGFALVITLCSIATSLWRPLVSALIGDIIHESQTRELAMQSLYFIVNVGCAVGPIA
GVWLGLTGEQSSFYITTVAFAILLLLLWWGFVNHEFTQATHPGQFGEEGNTANSGSDDQAASGMRHTLRVLASDRLLQSL
ILANVICMFIFGQMDGSLVQYLSRAGVPNVLELISSMIFANAMIIITCQFLLLKLMAHWSLVKRIQVALVLLIASQLWMG
LNPVDLFWGWIGAVIVMSLAEAVLFPTMNVHIDRIAPRHLRGAYFGASSFYEFGFALAPLGGGIVLDLLNGSWLFLGCAA
LTLLVMYLYSKLENLSRPDFATERVEH
>Mature_427_residues
MQSDISLARVKQFPRLMWILLFGSFITRGSYYMVWPFLAVILYERFGLSATNVGLILSSAALLSVLVSFIGSALSDRIGR
QKMMYGAGVLYIISFSLLAEADSVAGFALVITLCSIATSLWRPLVSALIGDIIHESQTRELAMQSLYFIVNVGCAVGPIA
GVWLGLTGEQSSFYITTVAFAILLLLLWWGFVNHEFTQATHPGQFGEEGNTANSGSDDQAASGMRHTLRVLASDRLLQSL
ILANVICMFIFGQMDGSLVQYLSRAGVPNVLELISSMIFANAMIIITCQFLLLKLMAHWSLVKRIQVALVLLIASQLWMG
LNPVDLFWGWIGAVIVMSLAEAVLFPTMNVHIDRIAPRHLRGAYFGASSFYEFGFALAPLGGGIVLDLLNGSWLFLGCAA
LTLLVMYLYSKLENLSRPDFATERVEH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. TCR/tet family [H]

Homologues:

Organism=Escherichia coli, GI1787815, Length=375, Percent_Identity=22.9333333333333, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR005829
- InterPro:   IPR001958 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 46890; Mature: 46890

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS00626 RCC1_2 ; PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSDISLARVKQFPRLMWILLFGSFITRGSYYMVWPFLAVILYERFGLSATNVGLILSSA
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ALLSVLVSFIGSALSDRIGRQKMMYGAGVLYIISFSLLAEADSVAGFALVITLCSIATSL
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRPLVSALIGDIIHESQTRELAMQSLYFIVNVGCAVGPIAGVWLGLTGEQSSFYITTVAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHH
AILLLLLWWGFVNHEFTQATHPGQFGEEGNTANSGSDDQAASGMRHTLRVLASDRLLQSL
HHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ILANVICMFIFGQMDGSLVQYLSRAGVPNVLELISSMIFANAMIIITCQFLLLKLMAHWS
HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVKRIQVALVLLIASQLWMGLNPVDLFWGWIGAVIVMSLAEAVLFPTMNVHIDRIAPRHL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHCCHHHH
RGAYFGASSFYEFGFALAPLGGGIVLDLLNGSWLFLGCAALTLLVMYLYSKLENLSRPDF
HHHHCCHHHHHHHHHHHHCCCCCCEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
ATERVEH
HHHHCCC
>Mature Secondary Structure
MQSDISLARVKQFPRLMWILLFGSFITRGSYYMVWPFLAVILYERFGLSATNVGLILSSA
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ALLSVLVSFIGSALSDRIGRQKMMYGAGVLYIISFSLLAEADSVAGFALVITLCSIATSL
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRPLVSALIGDIIHESQTRELAMQSLYFIVNVGCAVGPIAGVWLGLTGEQSSFYITTVAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHH
AILLLLLWWGFVNHEFTQATHPGQFGEEGNTANSGSDDQAASGMRHTLRVLASDRLLQSL
HHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ILANVICMFIFGQMDGSLVQYLSRAGVPNVLELISSMIFANAMIIITCQFLLLKLMAHWS
HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVKRIQVALVLLIASQLWMGLNPVDLFWGWIGAVIVMSLAEAVLFPTMNVHIDRIAPRHL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHCCHHHH
RGAYFGASSFYEFGFALAPLGGGIVLDLLNGSWLFLGCAALTLLVMYLYSKLENLSRPDF
HHHHCCHHHHHHHHHHHHCCCCCCEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
ATERVEH
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]